BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00019073
         (1055 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containi...    44   7e-11
ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|2...    50   2e-09
ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containi...    44   3e-09
gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsu...    47   2e-08
ref|XP_002270150.2| PREDICTED: F-box/FBD/LRR-repeat protein At1g...    65   4e-08

>ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score = 43.9 bits (102), Expect(3) = 7e-11
 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 33/79 (41%)
 Frame = +1

Query: 1   LSNIYAMAGRTDRVETIRNMMIQKG---------------------------------IR 81
           LSNIYA AGR + V  +R +M  +G                                 + 
Sbjct: 454 LSNIYAEAGRWEDVARVRKLMRDRGTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLY 513

Query: 82  KHSEKLAVAYGLLKTTPGT 138
           +HSEKLAV +GL+KTTPGT
Sbjct: 514 RHSEKLAVVFGLIKTTPGT 532



 Score = 43.9 bits (102), Expect(3) = 7e-11
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +2

Query: 152 CEEPPCHTALKFISVICSREIIVRDKLRFHLLK 250
           CE+  CH ALK ISV+ +REI+VRD+ RFH  K
Sbjct: 543 CED--CHAALKIISVVSTREIVVRDRNRFHCFK 573



 Score = 25.4 bits (54), Expect(3) = 7e-11
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 249 KNGSVSCMDYW 281
           KNGS SC DYW
Sbjct: 573 KNGSCSCGDYW 583


>ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|222870841|gb|EEF07972.1|
           predicted protein [Populus trichocarpa]
          Length = 585

 Score = 49.7 bits (117), Expect(3) = 2e-09
 Identities = 24/37 (64%), Positives = 29/37 (78%)
 Frame = +2

Query: 140 HINNCEEPPCHTALKFISVICSREIIVRDKLRFHLLK 250
           ++  CE+  CH+A+KFIS I SREIIVRDKLRFH  K
Sbjct: 541 NLRMCED--CHSAIKFISAISSREIIVRDKLRFHHFK 575



 Score = 35.0 bits (79), Expect(3) = 2e-09
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +1

Query: 76  IRKHSEKLAVAYGLLKTTPGT 138
           +R HSEKLA+A+GLLKT+ GT
Sbjct: 514 LRYHSEKLAIAFGLLKTSHGT 534



 Score = 23.9 bits (50), Expect(3) = 2e-09
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 249 KNGSVSCMDYW 281
           K GS SC+DYW
Sbjct: 575 KVGSCSCLDYW 585


>ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score = 43.9 bits (102), Expect(3) = 3e-09
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +2

Query: 152 CEEPPCHTALKFISVICSREIIVRDKLRFHLLK 250
           CE+  CH ALK ISV+ +REI+VRD+ RFH  K
Sbjct: 577 CED--CHAALKIISVVSTREIVVRDRNRFHCFK 607



 Score = 38.5 bits (88), Expect(3) = 3e-09
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +1

Query: 67  QKGIRKHSEKLAVAYGLLKTTPGT 138
           +K + +HSEKLAV +GL+KTTPGT
Sbjct: 543 EKFLYRHSEKLAVVFGLIKTTPGT 566



 Score = 25.4 bits (54), Expect(3) = 3e-09
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 249 KNGSVSCMDYW 281
           KNGS SC DYW
Sbjct: 607 KNGSCSCGDYW 617


>gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
           gi|227463002|gb|ACP39953.1| pentatricopeptide repeat
           protein [Gossypium hirsutum]
          Length = 592

 Score = 46.6 bits (109), Expect(3) = 2e-08
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = +2

Query: 140 HINNCEEPPCHTALKFISVICSREIIVRDKLRFHLLK 250
           ++  CE+  CHTA+K+IS+I +REI VRD+LRFH  K
Sbjct: 548 NLRMCED--CHTAIKYISIIANREINVRDRLRFHHFK 582



 Score = 33.9 bits (76), Expect(3) = 2e-08
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +1

Query: 76  IRKHSEKLAVAYGLLKTTPGTA 141
           +R HSEKLA+A+GLLKT  G A
Sbjct: 521 LRYHSEKLAIAFGLLKTGSGVA 542



 Score = 24.6 bits (52), Expect(3) = 2e-08
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 249 KNGSVSCMDYW 281
           K+GS SC DYW
Sbjct: 582 KDGSCSCQDYW 592


>ref|XP_002270150.2| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Vitis
           vinifera]
          Length = 414

 Score = 64.7 bits (156), Expect = 4e-08
 Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
 Frame = -3

Query: 738 VSHLPNLQELQIADTEYGCLNHKAA-WNFWEKESPAEFKFKQLKVVTMLE-AYTKICIEF 565
           + + PNL+ELQI+ +    ++ +    +FWE E P +  FK L+ V M + +     + F
Sbjct: 305 IIYSPNLEELQISGSSNTSVSPEVLDLDFWENECPLDCAFKCLQTVKMTDISGLPHEMRF 364

Query: 564 IKFVLGRSPVLEVMNIVPDT-DYSRKMEMVNKILHFPQASPKVDIKF 427
           IKF+L  SP+LE+M+I P       +M MV ++L F + SP+  IKF
Sbjct: 365 IKFLLENSPILEIMSITPSVYAIEGRMHMVTELLEFRRVSPQAKIKF 411