BLASTX nr result

ID: Bupleurum21_contig00018280 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00018280
         (408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM62133.1| phloem protein 2-2 [Apium graveolens Dulce Group]       96   4e-18
ref|XP_003607876.1| F-box protein PP2-B10 [Medicago truncatula] ...    81   8e-14
ref|XP_002332139.1| predicted protein [Populus trichocarpa] gi|2...    80   1e-13
gb|ABK95033.1| unknown [Populus trichocarpa]                           80   1e-13
gb|ABN06032.1| Galactose-binding like [Medicago truncatula]            80   2e-13

>gb|AAM62133.1| phloem protein 2-2 [Apium graveolens Dulce Group]
          Length = 179

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 53/123 (43%), Positives = 70/123 (56%)
 Frame = -3

Query: 373 MAQAFSHDGIRSLWSQGEESKKLHFISQDRPSLVGQLNARDLSIAWGSDPRYWKWTHIKD 194
           MAQ    D I SLW+QG ++ K      D+ S    L A++LSI WGSDPRYWKW     
Sbjct: 1   MAQV-QRDDIVSLWTQGFQALK------DKSSCAAVLTAKELSIVWGSDPRYWKWVSKTS 53

Query: 193 GICGDINEVAELLEISRLHIDGKYEANKIKEGLLYEVQFVVMLKDNHNITTPVNLVLTLP 14
            +  +  + AEL+E+  L IDG Y A  + +G+ Y V FVV L  N  +  PV L LT P
Sbjct: 54  PVNFEALDAAELIEVCWLQIDGTYNARNLNKGVKYGVYFVVELNSNPCMNGPVTLKLTRP 113

Query: 13  DGT 5
           +G+
Sbjct: 114 NGS 116


>ref|XP_003607876.1| F-box protein PP2-B10 [Medicago truncatula]
           gi|355508931|gb|AES90073.1| F-box protein PP2-B10
           [Medicago truncatula] gi|388501714|gb|AFK38923.1|
           unknown [Medicago truncatula]
          Length = 293

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
 Frame = -3

Query: 310 KLHFISQDRPSLVGQLNARDLSIAWGSDPRYWKWTHIKDGICGDINEVAELLEISRLHID 131
           K +++ ++  +    L AR LSI W  DP YWKW   KD +     EVAEL  +  L + 
Sbjct: 129 KKYWVEKNSKANCFMLYARALSITWAEDPNYWKWIQQKD-VSEGTTEVAELKRVCWLEVH 187

Query: 130 GKYEANKIKEGLLYEVQFVVMLKD-NHNITTPVNLVLTLPDGTK 2
           GK++  K+  G+LY+V F++MLKD       PVN+ L LP G K
Sbjct: 188 GKFDTRKLSPGILYQVSFIIMLKDPAQGWELPVNVRLVLPGGKK 231


>ref|XP_002332139.1| predicted protein [Populus trichocarpa] gi|222875189|gb|EEF12320.1|
           predicted protein [Populus trichocarpa]
          Length = 280

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
 Frame = -3

Query: 265 LNARDLSIAWGSDPRYWKWTHIKDGICGDIN-EVAELLEISRLHIDGKYEANKIKEGLLY 89
           L A+DLSI WG D RYWKW  I +   GD+  +VAELL++  L I GK+    +  G+LY
Sbjct: 133 LFAKDLSITWGGDARYWKWPSICES--GDVTVDVAELLDVCWLEIYGKFNTKMLSPGILY 190

Query: 88  EVQFVVMLKD-NHNITTPVNLVLTLPDGTK 2
           EV FV+ LKD  +    PVN+ L LP+G K
Sbjct: 191 EVVFVIKLKDPAYGWGVPVNVSLVLPNGYK 220


>gb|ABK95033.1| unknown [Populus trichocarpa]
          Length = 280

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
 Frame = -3

Query: 265 LNARDLSIAWGSDPRYWKWTHIKDGICGDIN-EVAELLEISRLHIDGKYEANKIKEGLLY 89
           L A+DLSI WG D RYWKW  I +   GD+  +VAELL++  L I GK+    +  G+LY
Sbjct: 133 LFAKDLSITWGGDTRYWKWPSICES--GDVTVDVAELLDVCWLEIYGKFNTKMLSPGILY 190

Query: 88  EVQFVVMLKD-NHNITTPVNLVLTLPDGTK 2
           EV FV+ LKD  +    PVN+ L LP+G K
Sbjct: 191 EVVFVIKLKDPAYGWGVPVNVSLVLPNGYK 220


>gb|ABN06032.1| Galactose-binding like [Medicago truncatula]
          Length = 290

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
 Frame = -3

Query: 265 LNARDLSIAWGSDPRYWKWTHIKDGICGDINEVAELLEISRLHIDGKYEANKIKEGLLYE 86
           L AR LSI W  DP YWKW   KD +     EVAEL  +  L + GK++  K+  G+LY+
Sbjct: 141 LYARALSITWAEDPNYWKWIQQKD-VSEGTTEVAELKRVCWLEVHGKFDTRKLSPGILYQ 199

Query: 85  VQFVVMLKD-NHNITTPVNLVLTLPDGTK 2
           V F++MLKD       PVN+ L LP G K
Sbjct: 200 VSFIIMLKDPAQGWELPVNVRLVLPGGKK 228


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