BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00018007
         (589 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia...    51   2e-14
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...    51   2e-14
gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotia...    51   2e-14
emb|CAD92662.1| RNA polymerase II [Solanum lycopersicum]               51   2e-14
gb|AAT69134.1| RNA polymerase II [Nicotiana tabacum]                   51   2e-14

>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score = 50.8 bits (120), Expect(3) = 2e-14
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 80  RDEKKKMGTLVKEDVGRPDRVSTMGM 157
           RDE+KKMGTLVKED GRPDR STMGM
Sbjct: 826 RDEEKKMGTLVKEDFGRPDRASTMGM 851



 Score = 42.0 bits (97), Expect(3) = 2e-14
 Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 159  SHDKLDDDGLAPPGTR*LVKMLSLGR--EYCSGCCWSGASCI*VHTR*SSLRHS*IGMVD 332
            S+DKLDDDGLAPPGTR   + + +G+            AS        +SLRHS  GMVD
Sbjct: 855  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVD 914

Query: 333  QKL 341
            Q L
Sbjct: 915  QVL 917



 Score = 31.2 bits (69), Expect(3) = 2e-14
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 1   DSVIMNQLSIDRGFF 45
           DSVIMNQ SIDRGFF
Sbjct: 803 DSVIMNQSSIDRGFF 817


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
           gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
           Full=DNA-directed RNA polymerase II subunit RPB2;
           Short=RNA polymerase II subunit 2; Short=RNA polymerase
           II subunit B2; AltName: Full=DNA-directed RNA polymerase
           II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
           polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 50.8 bits (120), Expect(3) = 2e-14
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 80  RDEKKKMGTLVKEDVGRPDRVSTMGM 157
           RDE+KKMGTLVKED GRPDR STMGM
Sbjct: 822 RDEEKKMGTLVKEDFGRPDRASTMGM 847



 Score = 42.0 bits (97), Expect(3) = 2e-14
 Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 159  SHDKLDDDGLAPPGTR*LVKMLSLGR--EYCSGCCWSGASCI*VHTR*SSLRHS*IGMVD 332
            S+DKLDDDGLAPPGTR   + + +G+            AS        +SLRHS  GMVD
Sbjct: 851  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVD 910

Query: 333  QKL 341
            Q L
Sbjct: 911  QVL 913



 Score = 31.2 bits (69), Expect(3) = 2e-14
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 1   DSVIMNQLSIDRGFF 45
           DSVIMNQ SIDRGFF
Sbjct: 799 DSVIMNQSSIDRGFF 813


>gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1087

 Score = 50.8 bits (120), Expect(3) = 2e-14
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 80  RDEKKKMGTLVKEDVGRPDRVSTMGM 157
           RDE+KKMGTLVKED GRPDR STMGM
Sbjct: 725 RDEEKKMGTLVKEDFGRPDRASTMGM 750



 Score = 42.0 bits (97), Expect(3) = 2e-14
 Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 159 SHDKLDDDGLAPPGTR*LVKMLSLGR--EYCSGCCWSGASCI*VHTR*SSLRHS*IGMVD 332
           S+DKLDDDGLAPPGTR   + + +G+            AS        +SLRHS  GMVD
Sbjct: 754 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVD 813

Query: 333 QKL 341
           Q L
Sbjct: 814 QVL 816



 Score = 31.2 bits (69), Expect(3) = 2e-14
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 1   DSVIMNQLSIDRGFF 45
           DSVIMNQ SIDRGFF
Sbjct: 702 DSVIMNQSSIDRGFF 716


>emb|CAD92662.1| RNA polymerase II [Solanum lycopersicum]
          Length = 396

 Score = 50.8 bits (120), Expect(3) = 2e-14
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 80  RDEKKKMGTLVKEDVGRPDRVSTMGM 157
           RDE+KKMGTLVKED GRPDR STMGM
Sbjct: 76  RDEEKKMGTLVKEDFGRPDRASTMGM 101



 Score = 42.0 bits (97), Expect(3) = 2e-14
 Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 159 SHDKLDDDGLAPPGTR*LVKMLSLGR--EYCSGCCWSGASCI*VHTR*SSLRHS*IGMVD 332
           S+DKLDDDGLAPPGTR   + + +G+            AS        +SLRHS  GMVD
Sbjct: 105 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVD 164

Query: 333 QKL 341
           Q L
Sbjct: 165 QVL 167



 Score = 31.2 bits (69), Expect(3) = 2e-14
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 1  DSVIMNQLSIDRGFF 45
          DSVIMNQ SIDRGFF
Sbjct: 53 DSVIMNQSSIDRGFF 67


>gb|AAT69134.1| RNA polymerase II [Nicotiana tabacum]
          Length = 216

 Score = 50.8 bits (120), Expect(3) = 2e-14
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 80  RDEKKKMGTLVKEDVGRPDRVSTMGM 157
           RDE+KKMGTLVKED GRPDR STMGM
Sbjct: 27  RDEEKKMGTLVKEDFGRPDRASTMGM 52



 Score = 42.0 bits (97), Expect(3) = 2e-14
 Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 159 SHDKLDDDGLAPPGTR*LVKMLSLGR--EYCSGCCWSGASCI*VHTR*SSLRHS*IGMVD 332
           S+DKLDDDGLAPPGTR   + + +G+            AS        +SLRHS  GMVD
Sbjct: 56  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVD 115

Query: 333 QKL 341
           Q L
Sbjct: 116 QVL 118



 Score = 31.2 bits (69), Expect(3) = 2e-14
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 1  DSVIMNQLSIDRGFF 45
          DSVIMNQ SIDRGFF
Sbjct: 4  DSVIMNQSSIDRGFF 18