BLASTX nr result
ID: Bupleurum21_contig00017397
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00017397
(1630 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 593 e-167
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 589 e-166
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 525 e-146
ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arab... 511 e-142
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 501 e-139
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 593 bits (1528), Expect = e-167
Identities = 292/541 (53%), Positives = 400/541 (73%), Gaps = 3/541 (0%)
Frame = -1
Query: 1630 ISEDLAMKCPATLLNARYIKDRKSEMVDDSLEGKMTDTYLREPPLLMQCRLFYNGCAVKG 1451
ISEDLA++CP L +Y+ + S++ D PLL+QCRLF NGCAVKG
Sbjct: 371 ISEDLALRCPNNLCRGKYMNNGNSDVCDSRY------------PLLIQCRLFNNGCAVKG 418
Query: 1450 TLLVNRKLPPKTIQIRPSMVKVEADPTLRNAPSVNSLEVVNISRKPAKSKLSKYLIALLN 1271
TLL+NRKLPP+TIQIRPSM+KVE DP L + +VNS+E+ S +P +S LSKYLIALL+
Sbjct: 419 TLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLS 478
Query: 1270 FGGVPEQFFLDIVADALDDSQRLFSNKRSALRASMKQSTIDDDSTTEKMIMSGVPLDEPC 1091
+GGVP ++F++++ DAL+D+ + S+KR+ALR S++ +DD T +MI+SG+P+DEP
Sbjct: 479 YGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVT-RMILSGIPIDEPF 537
Query: 1090 VRYRLSQLASLERKGLREGKLPISESFFLMGTADPTGLLNSDEVCVILENGQISGKVLVY 911
+ + LS + + ERKGLR GKLP+++ F+LMGTADPTG L SDEVC+IL++GQ+ G+VLVY
Sbjct: 538 LHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVY 597
Query: 910 RYPGLHFGDIHVLNAVYLKEMEDIVGNAKYGIFFSTKGQRSVASEIANGDFDGDLYWVSR 731
++PGLHFGDIHVLNA Y++ +E+ VGNAKY IFF KG RS+A E+AN DFDGD+YWVSR
Sbjct: 598 KHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSR 657
Query: 730 NNKLLHSFKESTPWKRMHSSPNVNHRKPSDFSDDELEHGIFELFLNTKNRNIS-VGVAAD 554
N +LL F+ S PW R S+ +V ++P+DFS DELEH +F+LFL T+ + S +G+AAD
Sbjct: 658 NQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAAD 717
Query: 553 NWLANTDRFLTA--DNSDEKNQFEAKMLNLIDIYYDALDAPKTGKKVWVPNELKADMYPH 380
NWL DR LT D SDEK + KML L DIYYDALDAPK+G KV V ELKA+ +PH
Sbjct: 718 NWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPH 777
Query: 379 YMEKDHEYYLSSSVLGQIYDAVQNHKPRTISTREITKLALFEQVQIPDVILQFWKEKFDD 200
+M ++ Y+ S+S+LGQIYDAV++ +P ST+EI +L LF +P L+ WK+++D
Sbjct: 778 FMGRESSYH-STSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQ 836
Query: 199 YRLEMCDAMSSRNQSETNSANDVINKYKEIMYGAADFKGTTRKLDDIYMDAIALYHVCYD 20
YR EM A+ +++ A +VINKYK+I+YGAA+F+ + R L+DI+ +A+A+YHV Y+
Sbjct: 837 YRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYE 896
Query: 19 F 17
F
Sbjct: 897 F 897
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 589 bits (1518), Expect = e-166
Identities = 291/541 (53%), Positives = 398/541 (73%), Gaps = 3/541 (0%)
Frame = -1
Query: 1630 ISEDLAMKCPATLLNARYIKDRKSEMVDDSLEGKMTDTYLREPPLLMQCRLFYNGCAVKG 1451
ISEDLA++CP L +Y+ + S+ PLL+QCRLF NGCAVKG
Sbjct: 363 ISEDLALRCPNNLCRGKYMNNGNSD------------------PLLIQCRLFNNGCAVKG 404
Query: 1450 TLLVNRKLPPKTIQIRPSMVKVEADPTLRNAPSVNSLEVVNISRKPAKSKLSKYLIALLN 1271
TLL+NRKLPP+TIQIRPSM+KVE DP L + +VNS+E+ S +P +S LSKYLIALL+
Sbjct: 405 TLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLS 464
Query: 1270 FGGVPEQFFLDIVADALDDSQRLFSNKRSALRASMKQSTIDDDSTTEKMIMSGVPLDEPC 1091
+GGVP ++F++++ DAL+D+ + S+KR+ALR S++ +DD T +MI+SG+P+DEP
Sbjct: 465 YGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVT-RMILSGIPIDEPF 523
Query: 1090 VRYRLSQLASLERKGLREGKLPISESFFLMGTADPTGLLNSDEVCVILENGQISGKVLVY 911
+ + LS + + ERKGLR GKLP+++ F+LMGTADPTG L SDEVC+IL++GQ+ G+VLVY
Sbjct: 524 LHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVY 583
Query: 910 RYPGLHFGDIHVLNAVYLKEMEDIVGNAKYGIFFSTKGQRSVASEIANGDFDGDLYWVSR 731
++PGLHFGDIHVLNA Y++ +E+ VGNAKY IFF KG RS+A E+AN DFDGD+YWVSR
Sbjct: 584 KHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSR 643
Query: 730 NNKLLHSFKESTPWKRMHSSPNVNHRKPSDFSDDELEHGIFELFLNTKNRNIS-VGVAAD 554
N +LL F+ S PW R S+ +V ++P+DFS DELEH +F+LFL T+ + S +G+AAD
Sbjct: 644 NQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAAD 703
Query: 553 NWLANTDRFLTA--DNSDEKNQFEAKMLNLIDIYYDALDAPKTGKKVWVPNELKADMYPH 380
NWL DR LT D SDEK + KML L DIYYDALDAPK+G KV V ELKA+ +PH
Sbjct: 704 NWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPH 763
Query: 379 YMEKDHEYYLSSSVLGQIYDAVQNHKPRTISTREITKLALFEQVQIPDVILQFWKEKFDD 200
+M ++ Y+ S+S+LGQIYDAV++ +P ST+EI +L LF +P L+ WK+++D
Sbjct: 764 FMGRESSYH-STSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQ 822
Query: 199 YRLEMCDAMSSRNQSETNSANDVINKYKEIMYGAADFKGTTRKLDDIYMDAIALYHVCYD 20
YR EM A+ +++ A +VINKYK+I+YGAA+F+ + R L+DI+ +A+A+YHV Y+
Sbjct: 823 YRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYE 882
Query: 19 F 17
F
Sbjct: 883 F 883
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 525 bits (1353), Expect = e-146
Identities = 277/557 (49%), Positives = 380/557 (68%), Gaps = 15/557 (2%)
Frame = -1
Query: 1630 ISEDLAMKCPATLLNARYIKDRKSEMV-----------DDSLEGKMTDTYLREPPLLMQC 1484
ISEDLA++CP + + D + + + +L+ + LREPPLL+Q
Sbjct: 462 ISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREPPLLIQF 521
Query: 1483 RLFYNGCAVKGTLLVNRKLPPKTIQIRPSMVKVEADPTLRNAPSVNSLEVVNISRKPAKS 1304
RLFYNG AVKGT L+N++LPP+TIQIR SM+KVE DP L N + NSLE+V S P ++
Sbjct: 522 RLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKRT 581
Query: 1303 KLSKYLIALLNFGGVPEQFFLDIVADALDDSQRLFSNKRSALRASMKQSTIDDDSTTEKM 1124
LS+ LIALLN+GGVP ++F++I+ DAL D Q +FS+KR+ALR S+ +DD +M
Sbjct: 582 FLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDD-FLVARM 640
Query: 1123 IMSGVPLDEPCVRYRLSQLASLERKGLREGKLPISESFFLMGTADPTGLLNSDEVCVILE 944
I++G+PLDE ++YRLS L E+K L+ G+L + E ++LMGT DPT L S EVCVIL
Sbjct: 641 ILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILY 700
Query: 943 NGQISGKVLVYRYPGLHFGDIHVLNAVYLKEMEDIVGNAKYGIFFSTKGQRSVASEIANG 764
NGQI+GKVLVYR PGLHFGDIHVL A Y++++ +VGNAKY IFFS+KG RSVA EIA G
Sbjct: 701 NGQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGG 760
Query: 763 DFDGDLYWVSRNNKLLHSFKESTPWKRMHSSPNVNHRKPSDFSDDELEHGIFELFLNTK- 587
DFDGD+YWVSRN++LL F+ PW+ S+ V ++KP +FS DELE+ +F+LFL+T+
Sbjct: 761 DFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRF 820
Query: 586 NRNISVGVAADNWLANTDRFLT--ADNSDEKNQFEAKMLNLIDIYYDALDAPKT-GKKVW 416
+ + VAADNWLA D+FL + +E+N AK+L LI+IYYDALDAPK GKK+
Sbjct: 821 QPSYAKSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIE 880
Query: 415 VPNELKADMYPHYMEKDHEYYLSSSVLGQIYDAVQNHKPRTISTREITKLALFEQVQIPD 236
VP LKA PH+ME+ Y+S+S+LGQI+D N + E+ KL FE+ ++P+
Sbjct: 881 VPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTA-NMYQEEVPNIEVQKLPCFEE-ELPE 938
Query: 235 VILQFWKEKFDDYRLEMCDAMSSRNQSETNSANDVINKYKEIMYGAADFKGTTRKLDDIY 56
I WK ++ YR +M DAM ++ +A I KYKEI+YGA + +G+ R +++Y
Sbjct: 939 YIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVY 998
Query: 55 MDAIALYHVCYDFAKSK 5
+A+A+Y V YD A S+
Sbjct: 999 QEALAIYQVTYDHAMSR 1015
>ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| RNA-dependent RNA
polymerase-like protein [Arabidopsis thaliana]
Length = 977
Score = 511 bits (1317), Expect = e-142
Identities = 264/548 (48%), Positives = 377/548 (68%), Gaps = 5/548 (0%)
Frame = -1
Query: 1630 ISEDLAMKCPATLLNARYIKDRKSEMVDDSLEGKMTDTYLREPPLLMQCRLFYNGCAVKG 1451
ISEDLA CP + + ++ SE + ++ ++PPLL+Q R+FY+G AVKG
Sbjct: 405 ISEDLARMCPLNIFKGKCLR---SESIQEAC--------YQDPPLLIQFRMFYDGYAVKG 453
Query: 1450 TLLVNRKLPPKTIQIRPSMVKVEADPTLRNAPSVNSLEVVNISRKPAKSKLSKYLIALLN 1271
T L+N+KL P+T+Q+RPSM+KV DP+L N + N+LEVV S P ++KLSK L+ALL+
Sbjct: 454 TFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLS 513
Query: 1270 FGGVPEQFFLDIVADALDDSQRLFSNKRSALRASMKQSTIDDDSTTEKMIMSGVPLDEPC 1091
+GG+P +FFLDI+ + L++S+ +F NKR+AL A++ +DD + + MI+ G+PLDEP
Sbjct: 514 YGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQ-MILVGIPLDEPH 572
Query: 1090 VRYRLSQLASLERKGLREGKLPISESFFLMGTADPTGLLNSDEVCVILENGQISGKVLVY 911
++ LS L E+ L+ GKLP++ES++LMGT DPTG L DEVCVILE+GQISG+VLVY
Sbjct: 573 LKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVY 632
Query: 910 RYPGLHFGDIHVLNAVYLKEMEDIVGNAKYGIFFSTKGQRSVASEIANGDFDGDLYWVSR 731
R PGLHFGDIH+L A Y+K +E+ VGN+K+ +FF KG RS+ EIA GDFDGD+Y++SR
Sbjct: 633 RNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISR 692
Query: 730 NNKLLHSFKESTPWKRMHSSPNVNH-RKPSDFSDDELEHGIFELFLNTK-NRNISVGVAA 557
N +LL +FK S PW + N R PS S +ELE +FE+FL + + +G+AA
Sbjct: 693 NPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAA 752
Query: 556 DNWLANTDRFLTA--DNSDEKNQFEAKMLNLIDIYYDALDAPKTGKKVWVPNELKADMYP 383
D+WL DRFL D ++EK + + KML LIDIYYDALDAPK G KV++PN+LK D++P
Sbjct: 753 DSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFP 812
Query: 382 HYMEKDHEYYLSSSVLGQIYDAVQNHKPRTIS-TREITKLALFEQVQIPDVILQFWKEKF 206
HYME+D ++ S+S+LG I+D V++ S + EI+KL FE + + +Q + +
Sbjct: 813 HYMERDKKFQ-STSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLWY 871
Query: 205 DDYRLEMCDAMSSRNQSETNSANDVINKYKEIMYGAADFKGTTRKLDDIYMDAIALYHVC 26
D+YR EM AM + + SAN+VI +YK+ YGAA F+ + + L+++Y A+ALY +
Sbjct: 872 DNYRTEMTQAMKT---DKDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIV 928
Query: 25 YDFAKSKG 2
YD+A G
Sbjct: 929 YDYAIHAG 936
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 501 bits (1289), Expect = e-139
Identities = 257/548 (46%), Positives = 371/548 (67%), Gaps = 5/548 (0%)
Frame = -1
Query: 1630 ISEDLAMKCPATLLNARYIKDRKSEMVDDSLEGKMTDTYLREPPLLMQCRLFYNGCAVKG 1451
ISEDLA CP + + ++ SE + ++ ++PPLL+Q R+FY+G AVKG
Sbjct: 409 ISEDLARMCPLNIFKGKCLR---SENIQEACN--------QDPPLLIQFRMFYDGYAVKG 457
Query: 1450 TLLVNRKLPPKTIQIRPSMVKVEADPTLRNAPSVNSLEVVNISRKPAKSKLSKYLIALLN 1271
T L+N+KL P+T+Q+RPSM+KV DP+L N + N+LEVV S P ++KLSK L+ALL+
Sbjct: 458 TFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLSKNLVALLS 517
Query: 1270 FGGVPEQFFLDIVADALDDSQRLFSNKRSALRASMKQSTIDDDSTTEKMIMSGVPLDEPC 1091
+GG+P +FFLDI+ + L++S+ +F NK +AL ++ +DD + + MI+ G+PLDEP
Sbjct: 518 YGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQ-MILVGIPLDEPH 576
Query: 1090 VRYRLSQLASLERKGLREGKLPISESFFLMGTADPTGLLNSDEVCVILENGQISGKVLVY 911
++ LS L E+ L+ G+LP++ES++LMGT DPTG L DEVCVILE+GQISG+VLVY
Sbjct: 577 LKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVY 636
Query: 910 RYPGLHFGDIHVLNAVYLKEMEDIVGNAKYGIFFSTKGQRSVASEIANGDFDGDLYWVSR 731
R PGLHFGDIH+L A Y+K +E+ VGN+KY +FF KG RS+ EIA GDFDGD+Y++SR
Sbjct: 637 RNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISR 696
Query: 730 NNKLLHSFKESTPWKRMHSSPNVNH-RKPSDFSDDELEHGIFELFLNTK-NRNISVGVAA 557
N +LL FK S PW + N R PS S +ELE +FE+FL + + +G+AA
Sbjct: 697 NPELLEHFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLKAGFHASNVIGIAA 756
Query: 556 DNWLANTDRFLTA--DNSDEKNQFEAKMLNLIDIYYDALDAPKTGKKVWVPNELKADMYP 383
D+WL DR L + ++EK + + KML LIDIYYDALDAPK G KV++PNEL+ D++P
Sbjct: 757 DSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFP 816
Query: 382 HYMEKDHEYYLSSSVLGQIYDAVQNH-KPRTISTREITKLALFEQVQIPDVILQFWKEKF 206
HYME++ + + S+S+LG IYD V++ + EI+KL FE + + ++ + +
Sbjct: 817 HYMEREKK-FKSTSILGLIYDFVKSQTTEEPTPSSEISKLPCFEDEPVSEFHMEKCRRWY 875
Query: 205 DDYRLEMCDAMSSRNQSETNSANDVINKYKEIMYGAADFKGTTRKLDDIYMDAIALYHVC 26
D+YR EM AM + + SAN+VI +YK+ YGAA F+ + + L+++Y A+ LY +
Sbjct: 876 DNYRSEMTQAMKT---DKDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALTLYKIV 932
Query: 25 YDFAKSKG 2
YD+A G
Sbjct: 933 YDYAIHAG 940