BLASTX nr result

ID: Bupleurum21_contig00017265 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00017265
         (405 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303042.1| hypothetical protein POPTRDRAFT_756271 [Popu...    98   6e-19
ref|XP_002521085.1| DNA binding protein, putative [Ricinus commu...    93   2e-17
ref|XP_002321281.1| predicted protein [Populus trichocarpa] gi|2...    91   1e-16
emb|CAN78796.1| hypothetical protein VITISV_008076 [Vitis vinifera]    89   4e-16
ref|XP_002269196.2| PREDICTED: uncharacterized protein LOC100267...    88   6e-16

>ref|XP_002303042.1| hypothetical protein POPTRDRAFT_756271 [Populus trichocarpa]
            gi|222844768|gb|EEE82315.1| hypothetical protein
            POPTRDRAFT_756271 [Populus trichocarpa]
          Length = 2006

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 66/145 (45%), Positives = 77/145 (53%), Gaps = 13/145 (8%)
 Frame = -3

Query: 397  QAKNLKGAGRGN-VVHQNHPTDSTVQNGPLVTTESHTGEVGEQSIRTIQGQGLYSGAGLN 221
            QAK LKG GRGN VVHQN P D +  NG  V   +H  E GEQ +  +QGQGLYSG GL+
Sbjct: 1657 QAKLLKGMGRGNMVVHQNLPNDHSPLNGLSVPPGNHGVEKGEQIMHLMQGQGLYSGTGLS 1716

Query: 220  SVQPQKQLVPSHISHXXXXXQKSYSGQTI-SSKQLQQTHAHSESSNQNHVLPAAAGPTSI 44
             +   K L PS   +     QK YSG T  SSK LQQ  +H ESS Q  V P  +G T  
Sbjct: 1717 PIHTSKPLGPSQSPNHSQPQQKLYSGPTTPSSKPLQQMPSHLESSTQGQVQPVPSGQTLT 1776

Query: 43   -----------SSQAVSLKQQPHQQ 2
                       S Q +    QPHQ+
Sbjct: 1777 ATHQNTPVMVPSHQHLQQHPQPHQK 1801


>ref|XP_002521085.1| DNA binding protein, putative [Ricinus communis]
            gi|223539654|gb|EEF41236.1| DNA binding protein, putative
            [Ricinus communis]
          Length = 2009

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 60/126 (47%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
 Frame = -3

Query: 397  QAKNLKGAGRGNV-VHQNHPTDSTVQNGPLVTTESHTGEVGEQSIRTIQGQGLYSGAGLN 221
            QAK LKG GRGN+ VHQN  TD +  NG  V   + + E GE  +  +QGQGLYSG+GLN
Sbjct: 1660 QAKLLKGMGRGNMMVHQNLSTDHSPLNGLSVPPGNQSAEKGEHIMHLMQGQGLYSGSGLN 1719

Query: 220  SVQPQKQLVPSHISHXXXXXQKSYS-GQTISSKQLQQTHAHSESSNQNHVLPAAAG-PTS 47
            S+QP K LV S   +     QK +S     SSKQLQQ  +H++ S Q  V    +G P S
Sbjct: 1720 SIQPSKPLVTSQSPNHSQSQQKLFSAAPPPSSKQLQQISSHADHSTQGQVPSVPSGHPLS 1779

Query: 46   ISSQAV 29
             S QA+
Sbjct: 1780 ASHQAL 1785


>ref|XP_002321281.1| predicted protein [Populus trichocarpa] gi|222862054|gb|EEE99596.1|
           predicted protein [Populus trichocarpa]
          Length = 537

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 60/134 (44%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
 Frame = -3

Query: 397 QAKNLKGAGRGN-VVHQNHPTDSTVQNGPLVTTESHTGEVGEQSIRTIQGQGLYSGAGLN 221
           QAK LKG GRGN VVHQN   D +  NG  V   +   E GEQ +  +QG GLYSGAGL+
Sbjct: 213 QAKLLKGMGRGNMVVHQNLLIDHSPLNGLSVPPGNQGAEKGEQIMHLMQGPGLYSGAGLS 272

Query: 220 SVQPQKQLVPSHISHXXXXXQKSYSGQT-ISSKQLQQTHAHSESSNQNHVLPAAAGPTSI 44
            +Q  K LV S   +     QK YSG T  SSK LQQ  +H ++S Q HV P  +G T  
Sbjct: 273 PIQSSKPLVSSQSLNHSQPQQKLYSGSTNPSSKPLQQMPSHLDNSVQGHVQPVLSGQTLT 332

Query: 43  SSQAVSLKQQPHQQ 2
           ++   +    P+ Q
Sbjct: 333 ATHQNTPVMVPNHQ 346


>emb|CAN78796.1| hypothetical protein VITISV_008076 [Vitis vinifera]
          Length = 2257

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 59/139 (42%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
 Frame = -3

Query: 403  QHQAKNLKGAGRGNV-VHQNHPTDSTVQNGPLVTTESHTGEVGEQSIRTIQGQGLYSGAG 227
            Q QAK LKG GRGN+ +H +   D +  NG      SH  E GEQ +  +QGQ LYSG+G
Sbjct: 1699 QQQAKLLKGTGRGNMLIHHSLSVDPSHLNGLSTAPGSHATEKGEQVMHMMQGQSLYSGSG 1758

Query: 226  LNSVQPQKQLVPSHISHXXXXXQKSYSGQTISSKQLQQTHAHSESSNQNHVLPAAAGPTS 47
            +N VQP K LVP   +       +S      SSKQLQQ   HS++SNQ  V    +G  +
Sbjct: 1759 VNPVQPAKPLVPQSAT-------QSQRPAPTSSKQLQQMPPHSDNSNQGQVPAVPSGHAT 1811

Query: 46   ISS--QAV--SLKQQPHQQ 2
            +S+  Q V  S+    HQQ
Sbjct: 1812 LSAPHQVVPPSVMTSNHQQ 1830


>ref|XP_002269196.2| PREDICTED: uncharacterized protein LOC100267035 [Vitis vinifera]
          Length = 2022

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 59/139 (42%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
 Frame = -3

Query: 403  QHQAKNLKGAGRGNVV-HQNHPTDSTVQNGPLVTTESHTGEVGEQSIRTIQGQGLYSGAG 227
            Q QAK LKG GRGN++ H +   D +  NG      SH  E GEQ +  +QGQ LYSG+G
Sbjct: 1683 QQQAKLLKGTGRGNMLMHHSLSVDPSHLNGLSTAPGSHATEKGEQVMHMMQGQSLYSGSG 1742

Query: 226  LNSVQPQKQLVPSHISHXXXXXQKSYSGQTISSKQLQQTHAHSESSNQNHVLPAAAGPTS 47
            +N VQP K LVP   +       +S      SSKQLQQ   HS++SNQ  V    +G  +
Sbjct: 1743 VNPVQPAKPLVPQSAT-------QSQRPAPTSSKQLQQMPPHSDNSNQGQVPAVPSGHAT 1795

Query: 46   ISS--QAV--SLKQQPHQQ 2
            +S+  Q V  S+    HQQ
Sbjct: 1796 LSAPHQVVPPSVMTSNHQQ 1814


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