BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00017238
         (924 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]   292   7e-77
ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2...   291   2e-76
ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|2...   279   6e-73
ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [...   276   5e-72
ref|XP_004136035.1| PREDICTED: mismatch repair endonuclease PMS2...   264   3e-68

>emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
          Length = 3804

 Score =  292 bits (748), Expect = 7e-77
 Identities = 174/333 (52%), Positives = 210/333 (63%), Gaps = 30/333 (9%)
 Frame = +2

Query: 5    KSVVLKTQGSGSLKDNIITVFGMSTFSCLEPISISISDGCKVDGFLSKSGFGSGRNLGDR 184
            KS+VLKTQGSGSLKDNIITVFGM+TF+CLEP++I +SD  KVDGF+SKSG+GSGR LGDR
Sbjct: 2907 KSMVLKTQGSGSLKDNIITVFGMNTFNCLEPLNICLSDSSKVDGFVSKSGYGSGRTLGDR 2966

Query: 185  QFFFVNGRPVDMPKVGKLVNELYKSANSRQYPIAILDFTLPMGACDVNVTPDKRKIFFSD 364
            QFFFVNGRPVDMPKVGKLVNELYK ANSRQYPIAI++FT+P  A DVNVTPDKRKIFFSD
Sbjct: 2967 QFFFVNGRPVDMPKVGKLVNELYKGANSRQYPIAIMNFTVPTRAYDVNVTPDKRKIFFSD 3026

Query: 365  ENTILDSLREALENIYSPGHASFSVNRCENLSQRDNISNTRSKLYPLLECSQLSPKKLSA 544
            E +IL SLRE LE IYSP   S+SVNR E  ++  +     S+L P       S K+L  
Sbjct: 3027 EGSILHSLREGLEKIYSPSLTSYSVNRFEEPTEETB----NSELNPPQTQILXSSKQLFP 3082

Query: 545  EGSDPKEAADNKEQCGNGGIHCTTTREG-KNRSSVAEV--------------IDIDGSLK 679
            +GSD +E A ++EQ     I     +   +N  +V E+              + + G  K
Sbjct: 3083 DGSDLQEEAHSEEQITEDQIPSKMVKSSTENMHAVKEMDHSYDKDSIEKDFSLRVHGIKK 3142

Query: 680  ACSFSRISKGKPVNHIRCAT------NAQDAPIRLGDTNKARGD---------NLDSSGG 814
            A SF +    K    I   T      +  +  ++    NK             N  SS  
Sbjct: 3143 ADSFPKWDSEKTTMTINSDTIDHQVLSLSEMVVKGAVGNKGSSSHSSYIQSFGNKGSSSH 3202

Query: 815  ENIIQASLSSFITVNKRKHENISTALSETPLLR 913
             +  Q+SLS F+TVNKRKHENIST LSE PLLR
Sbjct: 3203 SSYFQSSLSKFVTVNKRKHENISTVLSEAPLLR 3235


>ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera]
          Length = 937

 Score =  291 bits (744), Expect = 2e-76
 Identities = 174/333 (52%), Positives = 210/333 (63%), Gaps = 30/333 (9%)
 Frame = +2

Query: 5    KSVVLKTQGSGSLKDNIITVFGMSTFSCLEPISISISDGCKVDGFLSKSGFGSGRNLGDR 184
            KS+VLKTQGSGSLKDNIITVFGM+TF+CLEP++I +SD  KVDGF+SKSG+GSGR LGDR
Sbjct: 208  KSMVLKTQGSGSLKDNIITVFGMNTFNCLEPLNICLSDSSKVDGFVSKSGYGSGRTLGDR 267

Query: 185  QFFFVNGRPVDMPKVGKLVNELYKSANSRQYPIAILDFTLPMGACDVNVTPDKRKIFFSD 364
            QFFFVNGRPVDMPKVGKLVNELYK ANSRQYPIAI++FT+P  A DVNVTPDKRKIFFSD
Sbjct: 268  QFFFVNGRPVDMPKVGKLVNELYKGANSRQYPIAIMNFTVPTRAYDVNVTPDKRKIFFSD 327

Query: 365  ENTILDSLREALENIYSPGHASFSVNRCENLSQRDNISNTRSKLYPLLECSQLSPKKLSA 544
            E +IL SLRE LE IYSP   S+SVNR E  ++  +     S+L P       S K+L  
Sbjct: 328  EGSILHSLREGLEKIYSPSLTSYSVNRFEEPTEETD----NSELNPPQTQILSSSKQLFP 383

Query: 545  EGSDPKEAADNKEQCGNGGIHCTTTREG-KNRSSVAEV--------------IDIDGSLK 679
            +GSD +E A ++EQ     I     +   +N  +V E+              + + G  K
Sbjct: 384  DGSDLQEEAHSEEQITEDQIPSKMVKSSTENMHAVKEMDHSYDKDSIEKDFSLRVHGIKK 443

Query: 680  ACSFSRISKGKPVNHIRCAT------NAQDAPIRLGDTNKARGD---------NLDSSGG 814
            A SF +    K    I   T      +  +  ++    NK             N  SS  
Sbjct: 444  ADSFPKWDSEKTTMTINSDTIDHQVLSLSEMVVKGAVGNKGSSSHSSYIQSFGNKGSSSH 503

Query: 815  ENIIQASLSSFITVNKRKHENISTALSETPLLR 913
             +  Q+SLS F+TVNKRKHENIST LSE PLLR
Sbjct: 504  SSYFQSSLSKFVTVNKRKHENISTVLSEAPLLR 536


>ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|222861786|gb|EEE99328.1|
            predicted protein [Populus trichocarpa]
          Length = 915

 Score =  279 bits (714), Expect = 6e-73
 Identities = 166/322 (51%), Positives = 210/322 (65%), Gaps = 18/322 (5%)
 Frame = +2

Query: 2    AKSVVLKTQGSGSLKDNIITVFGMSTFSCLEPISISISDGCKVDGFLSKSGFGSGRNLGD 181
            AKSVVLKTQGS SLKDNIITVFG++TFSCLEP+ I IS  CKV+GFLSKSG GSGRNLGD
Sbjct: 203  AKSVVLKTQGSDSLKDNIITVFGVNTFSCLEPVDIDISGSCKVEGFLSKSGQGSGRNLGD 262

Query: 182  RQFFFVNGRPVDMPKVGKLVNELYKSANSRQYPIAILDFTLPMGACDVNVTPDKRKIFFS 361
            RQ++FVNGRPVDMPKV KLVNELYK ANSRQYPIAI++FT+P  ACDVNVTPDKRKIFFS
Sbjct: 263  RQYYFVNGRPVDMPKVSKLVNELYKGANSRQYPIAIMNFTIPTTACDVNVTPDKRKIFFS 322

Query: 362  DENTILDSLREALENIYSPGHASFSVNRCENLSQRDNISNTRSKLYPLLECSQLSPKKLS 541
            DE++IL +LRE LE  YS  ++ +SVN+ EN ++    +   S+L    E S +  K+ S
Sbjct: 323  DESSILLALREGLEKNYSSSNSCYSVNKFENHAK----AADSSQLCSPREKSNMLSKQSS 378

Query: 542  AEGSDPKEAADNKE---------------QCGNGGIHCTTTREGKNRSSVAE-VIDIDGS 673
            A G+D +E   + E               Q G   IH     + + +  + +  + + G 
Sbjct: 379  ANGNDSEETQTDAEDSSPLMTVEVKSKPFQVGERSIH-----DIEEKFMMKDFALRLHGI 433

Query: 674  LKACSFSRISKGKPVNHIRCAT--NAQDAPIRLGDTNKARGDNLDSSGGENIIQASLSSF 847
             K  S +  +  K   H+   T  NAQ  P R+ +  K      DS+G     Q+ LS+F
Sbjct: 434  KKTDSLTNSNSCKATTHLNIVTDQNAQ-CPSRVVERVKG-----DSNGPSGSFQSKLSNF 487

Query: 848  ITVNKRKHENISTALSETPLLR 913
            +TVNKRK E+I+T LSE P+LR
Sbjct: 488  LTVNKRKREDITTQLSEVPVLR 509


>ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis]
            gi|223537618|gb|EEF39241.1| DNA mismatch repair protein
            pms2, putative [Ricinus communis]
          Length = 924

 Score =  276 bits (706), Expect = 5e-72
 Identities = 162/315 (51%), Positives = 208/315 (66%), Gaps = 11/315 (3%)
 Frame = +2

Query: 2    AKSVVLKTQGSGSLKDNIITVFGMSTFSCLEPISISISDGCKVDGFLSKSGFGSGRNLGD 181
            AK VVLKTQG+ SLKDNIITVFGMSTFSCLEP+SI ISD CKVDGFLSK G GSGRNLGD
Sbjct: 204  AKIVVLKTQGTDSLKDNIITVFGMSTFSCLEPVSICISDCCKVDGFLSKPGQGSGRNLGD 263

Query: 182  RQFFFVNGRPVDMPKVGKLVNELYKSANSRQYPIAILDFTLPMGACDVNVTPDKRKIFFS 361
            RQ++FVNGRPVDMPKV KLVNELY+ ANSRQYPIAI++F +P  ACDVNVTPDKRKIFFS
Sbjct: 264  RQYYFVNGRPVDMPKVTKLVNELYRGANSRQYPIAIMNFIVPTRACDVNVTPDKRKIFFS 323

Query: 362  DENTILDSLREALENIYSPGHASFSVNRCENLSQRDNISNTRSKLYPLLECSQLSPKKLS 541
            DE +IL +LRE L+NIYSP +AS+SVN+ E   +  + S + S      E S +  K+LS
Sbjct: 324  DETSILHALREGLQNIYSPSNASYSVNKFEERIKAASNSQSCSP----HEKSLVLSKQLS 379

Query: 542  AEGSDPKEAADNKEQCGNGGIHCTTTREGKNRSSVAE-----VIDIDGSLKACSFSRI-- 700
            A  +D +E    +E   +G     T +   + S+V E      I  D +L+     ++  
Sbjct: 380  AVSNDAEEIL-VEEHTSDGSNLLQTVKMKSHPSNVGENRDEKRISKDFTLRVHDIPKVYS 438

Query: 701  ---SKGKPVNHIRCATNAQDAPIRLGDTNKARGDNLDSSGGENIIQASLSSFITVNKRKH 871
               S  + +  +      Q+ P       K   ++  S+     +Q+++S F+TV+KRKH
Sbjct: 439  FPNSNNRQLTTLHDTLTDQNTPSPSRVVAKNIAESRGSNSSSRSVQSTISKFVTVSKRKH 498

Query: 872  ENIS-TALSETPLLR 913
            ++IS T LSE P+LR
Sbjct: 499  DDISTTTLSEIPILR 513


>ref|XP_004136035.1| PREDICTED: mismatch repair endonuclease PMS2-like [Cucumis sativus]
            gi|449498483|ref|XP_004160549.1| PREDICTED: mismatch
            repair endonuclease PMS2-like [Cucumis sativus]
          Length = 921

 Score =  264 bits (674), Expect = 3e-68
 Identities = 157/323 (48%), Positives = 198/323 (61%), Gaps = 19/323 (5%)
 Frame = +2

Query: 2    AKSVVLKTQGSGSLKDNIITVFGMSTFSCLEPISISISDGCKVDGFLSKSGFGSGRNLGD 181
            AKSVV KTQGSGS+KDNIITVFGM+TF+CLE + I +SD CKVDGF+SKSG GSGRNLGD
Sbjct: 207  AKSVVFKTQGSGSIKDNIITVFGMNTFNCLESVCILLSDDCKVDGFVSKSGQGSGRNLGD 266

Query: 182  RQFFFVNGRPVDMPKVGKLVNELYKSANSRQYPIAILDFTLPMGACDVNVTPDKRKIFFS 361
            RQFFFVN RPVDMPKV KLVNELYKSANSRQYPIAIL+FTLP  ACDVNVTPDKRKIFFS
Sbjct: 267  RQFFFVNNRPVDMPKVSKLVNELYKSANSRQYPIAILNFTLPSKACDVNVTPDKRKIFFS 326

Query: 362  DENTILDSLREALENIYSPGHASFSVNRCENLS-QRDNIS--NTRSKLYPLLECSQLSPK 532
            DE  IL +LRE L  IYSP +A +SVN+ E  + Q D++   +   KL  LLE       
Sbjct: 327  DETHILQTLREELLKIYSPTNACYSVNKVEEPTVQVDSLELCSDNGKLSMLLE------- 379

Query: 533  KLSAEGSDPKEAADNKEQCGNGGIHCTTTREGKNRSSVAEVIDIDGSLKACSFSRISKGK 712
              S++G D ++A+           H   T +  + + +  V     S +  +        
Sbjct: 380  HFSSDGGDLRDASS----------HQPKTDDDDSFNKIKNVEQSPHSTEMLNSDDEENAT 429

Query: 713  PVNHIRCATNAQDAPIRLGDTNKARGDNLDSSGGENI----------------IQASLSS 844
              +        + A + L D ++ +   L +  G ++                +Q+SL  
Sbjct: 430  RKDFALRTHGTKKADVPLNDHDQHKRTYLSNKKGVHVTPFSPLLSVTGTDTSRVQSSLDK 489

Query: 845  FITVNKRKHENISTALSETPLLR 913
            F+T+NKRK E +S  LSE P+LR
Sbjct: 490  FVTINKRKSETLSAPLSEVPVLR 512