BLASTX nr result

ID: Bupleurum21_contig00017065 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00017065
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273366.1| PREDICTED: uncharacterized protein LOC100265...    77   1e-12
ref|XP_002519745.1| COR414-TM1, putative [Ricinus communis] gi|2...    77   2e-12
gb|AAG51739.1|AC068667_18 unknown protein; 31966-27882 [Arabidop...    76   3e-12
ref|NP_564327.1| cold regulated 314 thylakoid membrane 2 [Arabid...    76   3e-12
ref|XP_002331870.1| predicted protein [Populus trichocarpa] gi|2...    76   3e-12

>ref|XP_002273366.1| PREDICTED: uncharacterized protein LOC100265908 [Vitis vinifera]
           gi|297740634|emb|CBI30816.3| unnamed protein product
           [Vitis vinifera]
          Length = 210

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 37/62 (59%), Positives = 50/62 (80%)
 Frame = +3

Query: 102 MMRRKEGSGGAVCYANAGLSPRNLQWVATISSAVLMIAKGTPIQKSFLVPIFALQAPANI 281
           +M++     GAVCY+ A L+P NLQWV T+SSAVLM+++GT  QKSFLVP+FALQAP +I
Sbjct: 48  VMKKNRRGFGAVCYS-APLTPPNLQWVCTVSSAVLMLSRGTAAQKSFLVPLFALQAPTSI 106

Query: 282 VT 287
           ++
Sbjct: 107 IS 108


>ref|XP_002519745.1| COR414-TM1, putative [Ricinus communis] gi|223541162|gb|EEF42718.1|
           COR414-TM1, putative [Ricinus communis]
          Length = 223

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 40/80 (50%), Positives = 55/80 (68%)
 Frame = +3

Query: 48  FTPLRVSSVEDRRRGFMNMMRRKEGSGGAVCYANAGLSPRNLQWVATISSAVLMIAKGTP 227
           F PLR   +       M + ++K    GA+CYA   LS  NLQW++TISSA+LM+AKGT 
Sbjct: 44  FNPLRSFCINKGNNDRMTL-QKKVRRFGALCYAGP-LSTSNLQWISTISSAILMVAKGTA 101

Query: 228 IQKSFLVPIFALQAPANIVT 287
           IQKSF+VP+ ALQAP+ +++
Sbjct: 102 IQKSFVVPLLALQAPSTVIS 121


>gb|AAG51739.1|AC068667_18 unknown protein; 31966-27882 [Arabidopsis thaliana]
          Length = 484

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 45/84 (53%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
 Frame = +3

Query: 48  FTPLRVSSVEDRRR----GFMNMMRRKEGSGGAVCYANAGLSPRNLQWVATISSAVLMIA 215
           F PLR+S+  DR+R          RRK GS   VCYA   LS  NLQW++TIS   LM A
Sbjct: 245 FNPLRLSA--DRQRTATVSARAEKRRKRGSS-VVCYATPMLSVHNLQWISTISCVALMFA 301

Query: 216 KGTPIQKSFLVPIFALQAPANIVT 287
           +GT I KSF+VP+FALQAP  IV+
Sbjct: 302 RGTGIHKSFVVPLFALQAPMGIVS 325



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
 Frame = +3

Query: 36  TPTAFTPLRVSSVEDRRRGFMNMM--RRKEGSGGAVCYANAGLSPRNLQWVATISSAVLM 209
           +P  F PLR+S    R       +  RRK GS   VCYA A +S  +LQW++TIS   LM
Sbjct: 40  SPVCFNPLRLSGDRQRTATVSTRVEKRRKRGSS-VVCYA-APISANSLQWISTISCLALM 97

Query: 210 IAKGTPIQKSFLVPIFALQAPANIV 284
           +A+GT I KS +VP+FAL AP++IV
Sbjct: 98  LARGTGIHKSVVVPLFALHAPSSIV 122


>ref|NP_564327.1| cold regulated 314 thylakoid membrane 2 [Arabidopsis thaliana]
           gi|426019472|sp|F4I1G5.1|CRIM2_ARATH RecName:
           Full=Cold-regulated 413 inner membrane protein 2,
           chloroplastic; Short=AtCOR413-IM2; AltName:
           Full=Cold-regulated 413 thylakoid membrane 2;
           Short=AtCOR413-TM2; Flags: Precursor
           gi|332192959|gb|AEE31080.1| cold regulated 314 thylakoid
           membrane 2 [Arabidopsis thaliana]
          Length = 226

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 45/84 (53%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
 Frame = +3

Query: 48  FTPLRVSSVEDRRR----GFMNMMRRKEGSGGAVCYANAGLSPRNLQWVATISSAVLMIA 215
           F PLR+S+  DR+R          RRK GS   VCYA   LS  NLQW++TIS   LM A
Sbjct: 44  FNPLRLSA--DRQRTATVSARAEKRRKRGSS-VVCYATPMLSVHNLQWISTISCVALMFA 100

Query: 216 KGTPIQKSFLVPIFALQAPANIVT 287
           +GT I KSF+VP+FALQAP  IV+
Sbjct: 101 RGTGIHKSFVVPLFALQAPMGIVS 124


>ref|XP_002331870.1| predicted protein [Populus trichocarpa] gi|222875388|gb|EEF12519.1|
           predicted protein [Populus trichocarpa]
          Length = 229

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
 Frame = +3

Query: 42  TAFTPLRVSSVEDRRRGFMNMMRRKEGSG-GAVCYANAGLSPRNLQWVATISSAVLMIAK 218
           T F PLR+S   +     M + R++ G G GAVC+A +  +P +L W++ +SSAVL++AK
Sbjct: 48  TTFNPLRLSIKSNEM--MMKIKRKESGRGFGAVCHAGSLTTP-SLPWISALSSAVLVLAK 104

Query: 219 GTPIQKSFLVPIFALQAPANIVT 287
           GT +QKSFLVP+FALQAP  +++
Sbjct: 105 GTAVQKSFLVPLFALQAPPAVIS 127


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