BLASTX nr result

ID: Bupleurum21_contig00017049 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00017049
         (527 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associa...    73   2e-11
ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associa...    73   2e-11
gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]          72   4e-11
ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chlorop...    70   2e-10
ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associa...    67   2e-09

>ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
           chloroplastic-like [Cucumis sativus]
          Length = 603

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 47/135 (34%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
 Frame = -2

Query: 505 GNSLHRSDV-ESERRRVQSSPNMMSLWNRAIESNQAVXXXXXXXXXXXXLEKVEEFERLS 329
           G SL  SD+       +++SP M  LW  AI+SN+A+            LEKVEEFER+S
Sbjct: 473 GESLENSDLLHDNHHTIKTSPKMKLLWEHAIDSNKALLLDEIGLAPDDLLEKVEEFERIS 532

Query: 328 QATVHSFPANILPSEDVHGKPSKELGEERSQEXXXXXXXXXXXXXXXXXXXXXXXXXXST 149
           QAT HS+PA I  SEDV         ++ ++                             
Sbjct: 533 QATEHSYPAFITSSEDVSSPDDSPKSQDHTE------ANYNSDDDVGREEDLFDNADPLV 586

Query: 148 PQGSLPIDLIAKRFS 104
           P GSLP+D+IAK+ S
Sbjct: 587 PLGSLPVDIIAKKLS 601


>ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
           chloroplastic-like [Cucumis sativus]
          Length = 602

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 47/135 (34%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
 Frame = -2

Query: 505 GNSLHRSDV-ESERRRVQSSPNMMSLWNRAIESNQAVXXXXXXXXXXXXLEKVEEFERLS 329
           G SL  SD+       +++SP M  LW  AI+SN+A+            LEKVEEFER+S
Sbjct: 472 GESLENSDLLHGNHHTIKTSPKMKLLWEHAIDSNKALLLDEIGLAPDDLLEKVEEFERIS 531

Query: 328 QATVHSFPANILPSEDVHGKPSKELGEERSQEXXXXXXXXXXXXXXXXXXXXXXXXXXST 149
           QAT HS+PA I  SEDV         ++ ++                             
Sbjct: 532 QATEHSYPAFITSSEDVSSPDDSPKSQDHTE------ANYNSDDDVGREEDLFDNADPLV 585

Query: 148 PQGSLPIDLIAKRFS 104
           P GSLP+D+IAK+ S
Sbjct: 586 PLGSLPVDIIAKKLS 600


>gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
          Length = 603

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
 Frame = -2

Query: 508 TGNSLHRSDV-ESERRRVQSSPNMMSLWNRAIESNQAVXXXXXXXXXXXXLEKVEEFERL 332
           +G S+  SD+       +++SP M  LW RAI+SN+A+            LE+VEEFER+
Sbjct: 472 SGESVENSDLLNGNHHTIKTSPKMKLLWERAIDSNKALMLDEIGLAPDELLERVEEFERI 531

Query: 331 SQATVHSFPANILPSEDVHGKPSKELGEERSQEXXXXXXXXXXXXXXXXXXXXXXXXXXS 152
           SQAT HS+PA I  SE+V         ++ S+                            
Sbjct: 532 SQATEHSYPAFITSSEEVSSPADSPESQDHSE------ANYNSDDDVGREEDLFDNVDPL 585

Query: 151 TPQGSLPIDLIAKRFS 104
            P GSLP+D+IAK+ S
Sbjct: 586 VPLGSLPVDIIAKKLS 601


>ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
           gi|297739063|emb|CBI28552.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 45/131 (34%), Positives = 62/131 (47%)
 Frame = -2

Query: 493 HRSDVESERRRVQSSPNMMSLWNRAIESNQAVXXXXXXXXXXXXLEKVEEFERLSQATVH 314
           HR D ++    V +SP MMSLW  AIES++A+            L+ VEEFE +SQAT H
Sbjct: 434 HRLDTKA----VSASPKMMSLWKSAIESSKALLLDETGLGPDALLKVVEEFEGISQATEH 489

Query: 313 SFPANILPSEDVHGKPSKELGEERSQEXXXXXXXXXXXXXXXXXXXXXXXXXXSTPQGSL 134
           S+PA ++ SED  G    E     S++                            P GSL
Sbjct: 490 SYPALVMSSEDGTGGTKAEYEGYNSEDYSEDEMYNDDDDDEYLVNESLEEMESPVPLGSL 549

Query: 133 PIDLIAKRFSD 101
           P+DL+AK+  +
Sbjct: 550 PVDLLAKQLGE 560


>ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
           chloroplastic-like [Vitis vinifera]
          Length = 560

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 46/131 (35%), Positives = 62/131 (47%)
 Frame = -2

Query: 493 HRSDVESERRRVQSSPNMMSLWNRAIESNQAVXXXXXXXXXXXXLEKVEEFERLSQATVH 314
           HR D ++    V +SP MMSLW  AIES++A+            L+ VEEFE +SQAT H
Sbjct: 434 HRLDTKA----VSASPKMMSLWKSAIESSKALLLDEIGLGPDALLKVVEEFEGISQATEH 489

Query: 313 SFPANILPSEDVHGKPSKELGEERSQEXXXXXXXXXXXXXXXXXXXXXXXXXXSTPQGSL 134
           S+PA ++ SED  G    E  E  + E                            P GSL
Sbjct: 490 SYPALVMSSEDGTGGTKAE-HEGYNSEDYSEDEMYNDDDDEYLVNESLEEMESPVPLGSL 548

Query: 133 PIDLIAKRFSD 101
           P+DL+AK+  +
Sbjct: 549 PVDLLAKQLGE 559


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