BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00016642
         (1592 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containi...   687   0.0  
emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]   687   0.0  
ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containi...   680   0.0  
ref|XP_003609866.1| Pentatricopeptide repeat-containing protein ...   677   0.0  
ref|XP_002519315.1| pentatricopeptide repeat-containing protein,...   667   0.0  

>ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
            chloroplastic [Vitis vinifera]
          Length = 498

 Score =  687 bits (1774), Expect = 0.0
 Identities = 342/467 (73%), Positives = 392/467 (83%), Gaps = 7/467 (1%)
 Frame = -1

Query: 1547 PQHNTYSTAGVRRCI-------KCAMTATASSSAVGVPKKRHWKAGEFPGVSESSAPSRR 1389
            P+ +  S  GV RC        K + T ++SSS+  V KKR WK GEFPG S +   SR+
Sbjct: 30   PRDHHGSLCGVVRCAFASPARRKTSSTPSSSSSSSAVGKKRLWKQGEFPGTS-AEGRSRK 88

Query: 1388 VNYXXXXXXXXXXKLDRKNEAKSWAPTVTEALSDCIDKKQWLQALQVFEMLKEQPFYQPK 1209
                         KLDRKN+AK+WA TV EALSD + KKQWLQAL+VFEML+EQPFYQPK
Sbjct: 89   T-----PIKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVFEMLREQPFYQPK 143

Query: 1208 EGTYMKLIVLLGKNRQPELARQLFDTMIDEGLEPTAELYTALLGAYCRNNNIDEALSILD 1029
            EGTYMKL+VLLGK+ QP  A +LFDTM++EG EPT ELYTALL +YCR+N IDEA SIL+
Sbjct: 144  EGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILN 203

Query: 1028 RMKTLPLCQPDVFTFSILIKACVDATRFELVESLYEQMAERGISPNTVTQNIVLSGYGKA 849
            +MKTLP CQPDVFT+S L+KACVDA+RFELVESLYE+M  R I+PNTVTQNIVLSGYGKA
Sbjct: 204  QMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKA 263

Query: 848  GKFDQMEKVLLGMLESTTCRPDVWTMNTIISVFANRGDIEMMERWYEKFRNFGIEPETRT 669
            GKFD+MEKVL GMLEST+ +PDVWTMNTI+S+F N+G IE+ME+WYEKFRNFGIEPETRT
Sbjct: 264  GKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRT 323

Query: 668  FNILIGAYGKKRLYDKMSTVMEYMRKLSFPWTTSTYNNVIEAFSDAGDAKNMEYTFDQMR 489
            FNILIGAYGKKR+YDKMS+VMEYMRKL FPWTTSTYNNVIEAFSD GDAKNMEYTFDQMR
Sbjct: 324  FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMR 383

Query: 488  SEGMKADTKTFCCLIRGYANAGIFHKVISCVQLAGKLEIPENTSFFNAVIFACTKADDLM 309
            +EGMKADTKTFCCLIRGYANAG+FHKV+S VQLAGK EIPENTSF+NAVI AC KA+DL+
Sbjct: 384  AEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLI 443

Query: 308  EMERVFKRMKDQECKADSTTYSMMIEAYRKEGMTDKAYDLELEKQML 168
            EMERVF RMKD+ C+ DSTTYS+M+EAY+KEGM DK YDLE E+Q +
Sbjct: 444  EMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRM 490


>emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
          Length = 525

 Score =  687 bits (1774), Expect = 0.0
 Identities = 342/467 (73%), Positives = 392/467 (83%), Gaps = 7/467 (1%)
 Frame = -1

Query: 1547 PQHNTYSTAGVRRCI-------KCAMTATASSSAVGVPKKRHWKAGEFPGVSESSAPSRR 1389
            P+ +  S  GV RC        K + T ++SSS+  V KKR WK GEFPG S +   SR+
Sbjct: 30   PRDHHGSLCGVVRCAFASPARRKTSSTPSSSSSSSAVGKKRLWKQGEFPGTS-AEGRSRK 88

Query: 1388 VNYXXXXXXXXXXKLDRKNEAKSWAPTVTEALSDCIDKKQWLQALQVFEMLKEQPFYQPK 1209
                         KLDRKN+AK+WA TV EALSD + KKQWLQAL+VFEML+EQPFYQPK
Sbjct: 89   T-----PIKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVFEMLREQPFYQPK 143

Query: 1208 EGTYMKLIVLLGKNRQPELARQLFDTMIDEGLEPTAELYTALLGAYCRNNNIDEALSILD 1029
            EGTYMKL+VLLGK+ QP  A +LFDTM++EG EPT ELYTALL +YCR+N IDEA SIL+
Sbjct: 144  EGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILN 203

Query: 1028 RMKTLPLCQPDVFTFSILIKACVDATRFELVESLYEQMAERGISPNTVTQNIVLSGYGKA 849
            +MKTLP CQPDVFT+S L+KACVDA+RFELVESLYE+M  R I+PNTVTQNIVLSGYGKA
Sbjct: 204  QMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKA 263

Query: 848  GKFDQMEKVLLGMLESTTCRPDVWTMNTIISVFANRGDIEMMERWYEKFRNFGIEPETRT 669
            GKFD+MEKVL GMLEST+ +PDVWTMNTI+S+F N+G IE+ME+WYEKFRNFGIEPETRT
Sbjct: 264  GKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRT 323

Query: 668  FNILIGAYGKKRLYDKMSTVMEYMRKLSFPWTTSTYNNVIEAFSDAGDAKNMEYTFDQMR 489
            FNILIGAYGKKR+YDKMS+VMEYMRKL FPWTTSTYNNVIEAFSD GDAKNMEYTFDQMR
Sbjct: 324  FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMR 383

Query: 488  SEGMKADTKTFCCLIRGYANAGIFHKVISCVQLAGKLEIPENTSFFNAVIFACTKADDLM 309
            +EGMKADTKTFCCLIRGYANAG+FHKV+S VQLAGK EIPENTSF+NAVI AC KA+DL+
Sbjct: 384  AEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLI 443

Query: 308  EMERVFKRMKDQECKADSTTYSMMIEAYRKEGMTDKAYDLELEKQML 168
            EMERVF RMKD+ C+ DSTTYS+M+EAY+KEGM DK YDLE E+Q +
Sbjct: 444  EMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRM 490


>ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
            chloroplastic-like [Cucumis sativus]
            gi|449522692|ref|XP_004168360.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g06430,
            chloroplastic-like [Cucumis sativus]
          Length = 496

 Score =  680 bits (1754), Expect = 0.0
 Identities = 339/465 (72%), Positives = 387/465 (83%), Gaps = 10/465 (2%)
 Frame = -1

Query: 1511 RCIKCAMTATASSSAV-----GVPKKRHWKAGEFPGVSESS----APSRRVNYXXXXXXX 1359
            R ++CA  A    S V        KKRHWK GEFPG +E+S    AP +RV         
Sbjct: 42   RIVRCAFAAPTRKSPVPSTSSSPAKKRHWKQGEFPGTTETSTRRRAPLKRVK-------- 93

Query: 1358 XXXKLDRKNEAKSWAPTVTEALSDCIDKKQWLQALQVFEMLKEQPFYQPKEGTYMKLIVL 1179
               KLDRKN AK+WA TVTEALSD I  K+WLQAL+VFEML+EQPFY+PKEGTYMKL+VL
Sbjct: 94   --KKLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEGTYMKLLVL 151

Query: 1178 LGKNRQPELARQLFDTMIDEGLEPTAELYTALLGAYCRNNNIDEALSILDRMKTLPLCQP 999
            LG++ QP  AR LFDTM+ E  EPT ELYTALL AYCRNN ID+A S L+ MKTLP CQP
Sbjct: 152  LGRSGQPHRARLLFDTMVQERCEPTPELYTALLAAYCRNNLIDDAFSTLNLMKTLPRCQP 211

Query: 998  DVFTFSILIKACVDATRFELVESLYEQMAERGISPNTVTQNIVLSGYGKAGKFDQMEKVL 819
            DV+T+SILIKACVD +RFE+VESLYE+MAER I+PNTVTQNIVLSGYGK GK+DQMEKVL
Sbjct: 212  DVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVL 271

Query: 818  LGMLESTTCRPDVWTMNTIISVFANRGDIEMMERWYEKFRNFGIEPETRTFNILIGAYGK 639
            +GMLESTTCRPDVWTMN I+SVF N+G IEMMERWYEKFRNFGIEPETRTFNILIGAYGK
Sbjct: 272  IGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFNILIGAYGK 331

Query: 638  KRLYDKMSTVMEYMRKLSFPWTTSTYNNVIEAFSDAGDAKNMEYTFDQMRSEGMKADTKT 459
            KR+YDKMS+VMEYMRKL FPWTTSTYNNVIEAF+D GDAKNMEYTF+QMR+EGM+ADTKT
Sbjct: 332  KRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKT 391

Query: 458  FCCLIRGYANAGIFHKVISCVQLAGKLEIPENTSFFNAVIFACTKADDLMEMERVFKRMK 279
            FCCLI GYANAG+FHKVI  V+LAGKLEIPENTSF+NAVI AC KA+DLMEM+RVFKRMK
Sbjct: 392  FCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAEDLMEMDRVFKRMK 451

Query: 278  DQECKADSTTYSMMIEAYRKEGMTDKAYDLELE-KQMLNGGDSNE 147
            D+ C+ D+ TYS+M+EAY KEGM D+ + LELE KQ+++   +NE
Sbjct: 452  DKHCQPDNKTYSIMMEAYGKEGMNDRVHYLELEKKQVIDNASNNE 496


>ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355510921|gb|AES92063.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  677 bits (1746), Expect = 0.0
 Identities = 334/480 (69%), Positives = 389/480 (81%), Gaps = 7/480 (1%)
 Frame = -1

Query: 1550 LPQHNTYSTAGVRR-------CIKCAMTATASSSAVGVPKKRHWKAGEFPGVSESSAPSR 1392
            +PQHN  +    R+        +  + + TAS+S   V KK+HWK GEFPGVSE+S PS 
Sbjct: 20   IPQHNKTTHNNPRKPHLPIFYAVSSSPSKTASASNSSVVKKKHWKQGEFPGVSETSLPS- 78

Query: 1391 RVNYXXXXXXXXXXKLDRKNEAKSWAPTVTEALSDCIDKKQWLQALQVFEMLKEQPFYQP 1212
              +           KLDRKN AK+WA TVTEALS+CIDKKQWLQAL+  +ML+EQ FYQP
Sbjct: 79   --STRRKPIKNVKKKLDRKNNAKAWANTVTEALSECIDKKQWLQALETLDMLREQSFYQP 136

Query: 1211 KEGTYMKLIVLLGKNRQPELARQLFDTMIDEGLEPTAELYTALLGAYCRNNNIDEALSIL 1032
            +EGTYMKLIVLLGK+ QP+ A QLF  MI+EG +PT ELYTALL AYCR+N IDEALSIL
Sbjct: 137  REGTYMKLIVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTALLAAYCRSNMIDEALSIL 196

Query: 1031 DRMKTLPLCQPDVFTFSILIKACVDATRFELVESLYEQMAERGISPNTVTQNIVLSGYGK 852
            D MK  PLCQPDVFT+S LIKACVD  +FEL+E LYE+MA+R I PNTVTQNIVL+GYGK
Sbjct: 197  DEMKNHPLCQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRSIMPNTVTQNIVLNGYGK 256

Query: 851  AGKFDQMEKVLLGMLESTTCRPDVWTMNTIISVFANRGDIEMMERWYEKFRNFGIEPETR 672
            AG FDQMEKVL GML+S  C+PDVWTMNTII VF N G I+MME+WYEKFRNFGIEPETR
Sbjct: 257  AGMFDQMEKVLSGMLQSADCKPDVWTMNTIIGVFGNMGQIDMMEKWYEKFRNFGIEPETR 316

Query: 671  TFNILIGAYGKKRLYDKMSTVMEYMRKLSFPWTTSTYNNVIEAFSDAGDAKNMEYTFDQM 492
            TFNILIG+YGKKR+YDKMS+VMEYMRKL FPWTTSTYNNVIEAF++AGDAKNMEYTF+QM
Sbjct: 317  TFNILIGSYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAEAGDAKNMEYTFNQM 376

Query: 491  RSEGMKADTKTFCCLIRGYANAGIFHKVISCVQLAGKLEIPENTSFFNAVIFACTKADDL 312
            RSEGM+ADTKTFCCLI+G+ANAG+FHKVIS VQLA KLEIP NT+F+NAV+ AC KA+DL
Sbjct: 377  RSEGMRADTKTFCCLIKGFANAGLFHKVISSVQLAAKLEIPLNTAFYNAVLSACAKAEDL 436

Query: 311  MEMERVFKRMKDQECKADSTTYSMMIEAYRKEGMTDKAYDLELEKQMLNGGDSNEDEQIE 132
            MEM+RVF RMKD +C  D TTYS+M+EAYRKEGM DK Y LE EKQ +   +  E++ ++
Sbjct: 437  MEMDRVFMRMKDTQCPLDDTTYSIMVEAYRKEGMNDKIYYLEQEKQTMITDNKIENQPVD 496


>ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541630|gb|EEF43179.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score =  667 bits (1720), Expect = 0.0
 Identities = 327/463 (70%), Positives = 381/463 (82%)
 Frame = -1

Query: 1562 PQTRLPQHNTYSTAGVRRCIKCAMTATASSSAVGVPKKRHWKAGEFPGVSESSAPSRRVN 1383
            P++  P+H           + CA   T++S     PKK+HWK GEFPG +E+S P R   
Sbjct: 32   PRSHQPKHTL---------VLCAYAPTSTS-----PKKKHWKQGEFPGFTETSPPRRT-- 75

Query: 1382 YXXXXXXXXXXKLDRKNEAKSWAPTVTEALSDCIDKKQWLQALQVFEMLKEQPFYQPKEG 1203
                       KLDRKN+AK+W  TVTEALSD I KKQW QAL+VFEMLKEQPFY PKEG
Sbjct: 76   ----PIKNIKKKLDRKNKAKAWVNTVTEALSDRILKKQWFQALEVFEMLKEQPFYHPKEG 131

Query: 1202 TYMKLIVLLGKNRQPELARQLFDTMIDEGLEPTAELYTALLGAYCRNNNIDEALSILDRM 1023
            TYMKL+VLLG+  QP+ A QLFD M++EG+EPTAELYTALL AYCRN+  DEA SIL +M
Sbjct: 132  TYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTALLAAYCRNHLTDEAFSILQQM 191

Query: 1022 KTLPLCQPDVFTFSILIKACVDATRFELVESLYEQMAERGISPNTVTQNIVLSGYGKAGK 843
            KTLP C PDV+T+S L+KACVDA+RFELVE+LY++M ER I+PNTVTQNIVLSGYGKAG 
Sbjct: 192  KTLPRCLPDVYTYSTLLKACVDASRFELVEALYQEMGERLITPNTVTQNIVLSGYGKAGM 251

Query: 842  FDQMEKVLLGMLESTTCRPDVWTMNTIISVFANRGDIEMMERWYEKFRNFGIEPETRTFN 663
            +DQME+VL GMLEST C+PDVWTMN I+SVF N+G I++ME+WYEKFR+FGIEPETRTFN
Sbjct: 252  YDQMERVLSGMLESTECKPDVWTMNIILSVFGNKGQIDLMEKWYEKFRSFGIEPETRTFN 311

Query: 662  ILIGAYGKKRLYDKMSTVMEYMRKLSFPWTTSTYNNVIEAFSDAGDAKNMEYTFDQMRSE 483
            ILIGAYGKKR+YDKMS+VME+MRKL FPWTTSTYNNVIEAF+ AGD K+MEYTFDQMR+E
Sbjct: 312  ILIGAYGKKRMYDKMSSVMEFMRKLQFPWTTSTYNNVIEAFAVAGDVKHMEYTFDQMRAE 371

Query: 482  GMKADTKTFCCLIRGYANAGIFHKVISCVQLAGKLEIPENTSFFNAVIFACTKADDLMEM 303
            GMKADTKTFCCLI GYANAG+FHKVIS VQLA K EIPENT+F+NA+I AC KA+DLMEM
Sbjct: 372  GMKADTKTFCCLINGYANAGLFHKVISSVQLATKFEIPENTTFYNAIISACAKAEDLMEM 431

Query: 302  ERVFKRMKDQECKADSTTYSMMIEAYRKEGMTDKAYDLELEKQ 174
            ERVFKRMKD +C+ DSTTYS+M+EAY++EGM DK Y LE EKQ
Sbjct: 432  ERVFKRMKDNQCQPDSTTYSIMVEAYKREGMNDKVYYLEQEKQ 474