BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00016607
         (1102 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   160   4e-37
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   158   2e-36
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...   153   6e-35
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   148   3e-33
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   147   6e-33

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
            predicted protein [Populus trichocarpa]
          Length = 517

 Score =  160 bits (406), Expect = 4e-37
 Identities = 100/343 (29%), Positives = 157/343 (45%), Gaps = 17/343 (4%)
 Frame = -3

Query: 1082 KVAWSDYCRPVDEGGLGLRDLLSWNQAAILFQLWRLTRPST-SLWVSWFRTFVLKNKALW 906
            KVAW   C P  EGGLG++ +  WN+ A+L  +W L   S  S+W +W R+ +L+ +  W
Sbjct: 146  KVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFW 205

Query: 905  TIAISSRFSWCIRKILGAREAALQHISYEVGVGCNFLLWHDPW-PGRPLIQ*FGASLITT 729
            TI      SW   KIL  R  A   + Y +G G    LW D W P  PL   +G   I  
Sbjct: 206  TIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYD 265

Query: 728  VGSSNMALVASVLNGNSWSL--NHAIELRHVVSSIPIIAH------DTISW--DGNKSVG 579
             G +  A V  ++  + W      AI    ++ +IP  ++      D + W    N    
Sbjct: 266  SGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFS 325

Query: 578  ISYIWNSIRPIASPPLWNSVVWHPWSIKKCSFILWLALKGRLLTKDRMIAFGMAANPLCL 399
            +   W  +R       W+ +VW   ++ + SF+LW+A++ +L T+D++  FG+     C 
Sbjct: 326  VKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCS 385

Query: 398  LCNQQQETISHIFVSCRYSSI----VMDSCPFP-LTCDWCKYQQGDVTATGLFVIKQRLC 234
            LC +  E  +H+F  C Y+      V D C  P +T  W ++ +    +          C
Sbjct: 386  LCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFVNFSC 445

Query: 233  HLFLSIAAHSIWMERNNRLHLTSSRRSALRLAQDIKVTLRAKI 105
             L  +   + +W ERN R+    SR   L L Q I+  +R K+
Sbjct: 446  KLSFAATVYHVWQERNARIFAGMSRTPNLVLNQ-IECIIRDKL 487


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  158 bits (400), Expect = 2e-36
 Identities = 111/349 (31%), Positives = 158/349 (45%), Gaps = 23/349 (6%)
 Frame = -3

Query: 1082 KVAWSDYCRPVDEGGLGLRDLLSWNQAAILFQLWRLTRPSTSLWVSWFRTFVLKNKALWT 903
            KV+W + C+P  EGGLGL+ L   N+ + L  +WRL     SLWV W R  +LK ++ W+
Sbjct: 580  KVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWS 639

Query: 902  IAISSRF-SWCIRKILGAREAALQHISYEVGVGCNFLLWHDPWPGR-PLIQ*FGASLITT 729
            I   S   SW  R++L  RE A      EV  G N   W D W  + PLI   GA     
Sbjct: 640  IGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTGAR---- 695

Query: 728  VGSSNMALVASVLNGNSWSLN----HAIELRHVVSSI--------PIIAHDTISWDGNKS 585
             G+ +M +   +    +WS      H +E+ +    I         I   D I W G + 
Sbjct: 696  -GAIDMGISRHMTLAEAWSRRRRKRHRVEILNEFEEILLQKYQHRNIELEDAILWRGKED 754

Query: 584  V-----GISYIWNSIRPIASPPLWNSVVWHPWSIKKCSFILWLALKGRLLTKDRMIAFGM 420
            V          WN IR  ++   W+  VW   +  K SF  WLA++ RL T DRM+ +  
Sbjct: 755  VFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNN 814

Query: 419  AANPLCLLCNQQQETISHIFVSCRYSSIVMDSCPFPLTCDWCKYQQGDV----TATGLFV 252
                 C+ C+   ET  H+F  C YSS +  S    +  D    +   V    + +    
Sbjct: 815  GTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDRFSTKWSAVVNYISDSQPDR 874

Query: 251  IKQRLCHLFLSIAAHSIWMERNNRLHLTSSRRSALRLAQDIKVTLRAKI 105
            I+  L      ++ HSIW ERN+R H   S RSA  L + I  T+R ++
Sbjct: 875  IQSFLSRYTFQVSIHSIWRERNSRRHGEKS-RSASNLIRQIDKTIRNQL 922


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score =  153 bits (387), Expect = 6e-35
 Identities = 110/337 (32%), Positives = 150/337 (44%), Gaps = 18/337 (5%)
 Frame = -3

Query: 1097 SKAHCKVAWSDYCRPVDEGGLGLRDLLSWNQAAILFQLWRLTRPSTSLWVSWFRTFVLKN 918
            ++   KV+W+D C P +EGGLGLR L   N+   L  +WRL   S+SLWV W R +V++ 
Sbjct: 74   NRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLS-SSSLWVQWLRQYVIRK 132

Query: 917  KALWTIAISSRF-SWCIRKILGAREAALQHISYEVGVGCNFLLWHDPW-PGRPLIQ*FGA 744
             + W++  +S   SW  RK+L  R  A     YE+  G     WHD W P  PLI   G 
Sbjct: 133  GSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNWSPLGPLIAISGT 192

Query: 743  SLITTVGSSNMALVASVLNGN-----SWSLNHA-IELRHVVSSIPIIAHDTISWDGN--- 591
                 +G    A VA  L        +  LN    +L  + +   +   D + W G    
Sbjct: 193  RGCIDMGIDIHATVAEALTHRRRRHRADHLNQMEAQLEELRTKGLVETEDVVLWKGKGGR 252

Query: 590  --KSVGISYIWNSIRPIASPPLWNSVVWHPWSIKKCSFILWLALKGRLLTKDRMIAFGMA 417
               S      W   R       W   +W   +  K SFI WLA K RL T DRM+++   
Sbjct: 253  FKPSFSTKETWADTREQKPRNEWYQGIWFSHATPKYSFITWLATKNRLSTGDRMMSWNAG 312

Query: 416  ANPLCLLCNQQQETISHIFVSCRYSSIVMDSCPFPL-----TCDWCKYQQGDVTATGLFV 252
             N  C+ C +Q ET +H+F +CRYS  V       L     + DW    +  +T   L  
Sbjct: 313  VNLSCVFCQEQTETRNHLFFTCRYSREVWSGLTSKLLTRHYSTDWTTILK-LLTDKTLGN 371

Query: 251  IKQRLCHLFLSIAAHSIWMERNNRLHLTSSRRSALRL 141
             +  L      I  +SIW ERN+R H      SAL L
Sbjct: 372  NRLFLLRYAFQILVYSIWKERNSRRHGEEPLPSALLL 408


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  148 bits (373), Expect = 3e-33
 Identities = 113/359 (31%), Positives = 161/359 (44%), Gaps = 25/359 (6%)
 Frame = -3

Query: 1082 KVAWSDYCRPVDEGGLGLRDLLSWNQAAILFQLWRLTRPSTSLWVSWFRTFVLKNKALWT 903
            K+AWS  C+P  EGGLG++ L   N+ + L  +WRL     SLWV+W  TF+++    W+
Sbjct: 1156 KIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWS 1215

Query: 902  I-AISSRFSWCIRKILGAREAALQHISYEVGVGCNFLLWHDPWP--GRPLIQ*FGASLIT 732
                SS  SW  +K+L  RE A      EV  G +   W+D W   GR L+   G   + 
Sbjct: 1216 ANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLGR-LLDITGTRRVI 1274

Query: 731  TVGSSNMALVASVLNGNSWSLNHAIELRHVVSSIPIIAH-------DTISW-----DGNK 588
             +G      + +VL  +    + A     + + I  +         D   W     D NK
Sbjct: 1275 DLGIPLETNLETVLRTHQHRQHRAAIYNRINAEIQRLQQQEREAGPDISLWRSLKNDFNK 1334

Query: 587  SVGISYIWNSIRPIASPPLWNSVVWHPWSIKKCSFILWLALKGRLLTKDRMIAFGMAANP 408
                   WN++R       W   VW P+S  K SF+LWL ++ RL T DR+ A+      
Sbjct: 1335 RFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLV 1394

Query: 407  LCLLCNQQQETISHIFVSCRYSSIVMDSCPFPL-----TCDWCKYQQGDVTATGLFVIKQ 243
             C LCN  +ET  H+F SC+Y+S V ++    L     + DW +        T L     
Sbjct: 1395 TCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNR------LFTLLCTSNL 1448

Query: 242  RLCHLFL-----SIAAHSIWMERNNRLHLTSSRRSALRLAQDIKVTLRAKIFSCPDFKD 81
               HLFL       + + IW ERN R H   S  +  RL + I  T+R +I S  D  D
Sbjct: 1449 PRDHLFLFRYVFQASIYHIWRERNARRHGEISSPTN-RLIKLIDKTVRNRISSIRDTGD 1506


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  147 bits (370), Expect = 6e-33
 Identities = 102/322 (31%), Positives = 147/322 (45%), Gaps = 19/322 (5%)
 Frame = -3

Query: 1082 KVAWSDYCRPVDEGGLGLRDLLSWNQAAILFQLWRLTRPSTSLWVSWFRTFVLKNKALWT 903
            K+AWS+ C+  +EGGLGL+ L   N+ ++L  +WR+     SLWV W    +++ +  W+
Sbjct: 1006 KIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWS 1065

Query: 902  IAISSRF-SWCIRKILGAREAALQHISYEVGVGCNFLLWHDPW-PGRPLIQ*FGASLITT 729
            +  ++   SW  RKIL  R+ A      EV  G     WHD W P   L Q  G+     
Sbjct: 1066 VKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTID 1125

Query: 728  VGSSNMALVASVLNGNSWSLNHAIELRHVVSSIPIIAHDTISWDGNKSV----------- 582
            +G  N A VA V+N +    + A  L  + S I +   D  S DG++S+           
Sbjct: 1126 LGIPNNATVAEVMNTHRRKRHRADFLNQIKSQIELARQDR-STDGDRSLWKQKEDTFKSS 1184

Query: 581  -GISYIWNSIRPIASPPLWNSVVWHPWSIKKCSFILWLALKGRLLTKDRMIAFGMAANPL 405
               S  W  IR I+    W   VW   S  K SF+ WLA   RL T D++  +   A   
Sbjct: 1185 FSSSKTWQQIRSISLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYD 1244

Query: 404  CLLCNQQQETISHIFVSCRYSSIVMDSCPFPLTCDWCKYQQGDVTATGLFVIKQRLCHLF 225
            C+ C ++ ET  H+F SC YSS V  S    L  +       ++    L    +   H+F
Sbjct: 1245 CVFCGEELETRDHLFFSCPYSSHVWFSLTKGL-LNGRNILNWNLITPHLLDSSRPYLHVF 1303

Query: 224  -----LSIAAHSIWMERNNRLH 174
                    + HS+W ERN R H
Sbjct: 1304 TLRYAFQASIHSLWRERNCRRH 1325