BLASTX nr result
ID: Bupleurum21_contig00016428
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00016428
(1711 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272683.1| PREDICTED: DNA ligase 1 [Vitis vinifera] gi|... 674 0.0
ref|XP_002314303.1| predicted protein [Populus trichocarpa] gi|2... 662 0.0
ref|XP_004160093.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 1... 654 0.0
ref|XP_004145818.1| PREDICTED: DNA ligase 1-like [Cucumis sativus] 654 0.0
dbj|BAE71211.1| putative DNA ligase [Trifolium pratense] 632 0.0
>ref|XP_002272683.1| PREDICTED: DNA ligase 1 [Vitis vinifera] gi|297734904|emb|CBI17138.3|
unnamed protein product [Vitis vinifera]
Length = 723
Score = 674 bits (1740), Expect(2) = 0.0
Identities = 330/383 (86%), Positives = 355/383 (92%)
Frame = +3
Query: 561 HIDSPLEEAAKIVKQVYSVIPVYDKIVPAILIGGVWNLPKTCNFSPGVPVGPMLAKPTKG 740
HI SPLEEAA IVKQ YSV+PVYDKIVPA+L GGVWNLPKTC+F PGVPVGPMLAKPTKG
Sbjct: 300 HIQSPLEEAANIVKQSYSVLPVYDKIVPALLSGGVWNLPKTCSFMPGVPVGPMLAKPTKG 359
Query: 741 VSEILDKFQDMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVAAISRLKK 920
VSEI+DKFQDMEFTCEYKYDGERAQIHY EDGSVEIYSRNAERNTGK+PDVV A+SRLKK
Sbjct: 360 VSEIIDKFQDMEFTCEYKYDGERAQIHYKEDGSVEIYSRNAERNTGKYPDVVVAVSRLKK 419
Query: 921 SSVSSFVLDCELVAYDREKKKILPFQVLSTRARKNVVLDDIKVEVCIFAFDILYLNGQTL 1100
SSVSSFVLDCELVAYDR+K KILPFQVLSTRARKNVV+ +IKV+VCIFAFDILY NGQ L
Sbjct: 420 SSVSSFVLDCELVAYDRQKGKILPFQVLSTRARKNVVMSEIKVDVCIFAFDILYRNGQPL 479
Query: 1101 LQEQLNVRKEHLYESFEEEPGYFQFATAITSTDLEEIQKFLENSVDASCEGLIIKTLSRD 1280
LQEQL +R+EHLYESFEEEPG+FQFATAITS DLEEIQKFLE +VD SCEGLIIKTL+ D
Sbjct: 480 LQEQLKIRREHLYESFEEEPGFFQFATAITSNDLEEIQKFLEAAVDTSCEGLIIKTLNGD 539
Query: 1281 ATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIAAFNGRGKRTGVYGAFLLACYDSNNESF 1460
ATYEPSKRS+NWLKLKKDYME+IGDSLDLVPIAAF+GRGKR GVYGAFLLACYDSN E +
Sbjct: 540 ATYEPSKRSHNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRAGVYGAFLLACYDSNKEEY 599
Query: 1461 QTICKIGTGFSEVVLEQRSTSLRSKVIPKAKTYYRYADKISPDVWFEPTEVWEVKAADLT 1640
Q+ICKIGTGFSE VLE+RS SLRSKVI + K YYRYAD I PDVWFEPTEVWEVKAADLT
Sbjct: 600 QSICKIGTGFSEAVLEERSASLRSKVISRPKPYYRYADSIDPDVWFEPTEVWEVKAADLT 659
Query: 1641 ISPVYCAAIGIVDSDKGISLRFP 1709
ISPV+ AA+GIVD +KGISLRFP
Sbjct: 660 ISPVHRAAVGIVDPNKGISLRFP 682
Score = 249 bits (637), Expect(2) = 0.0
Identities = 131/147 (89%), Positives = 134/147 (91%)
Frame = +1
Query: 1 NMLRTVIQTSPDDLVPVVYLLANRIAPAHEGLELGIGDASIIKALAEACGCKEAQIKKQY 180
NMLRTV+ +PDDLV VVYL ANRIAPAHEGLELGIGDASIIKALAEACG KE QIK QY
Sbjct: 134 NMLRTVMHATPDDLVAVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRKEEQIKSQY 193
Query: 181 KDLGDLGLVAKASRSSQSLMRKPEALTVTKVFNTFQLIAKESGKDSQEKKKNHIKALLVA 360
K LGDLGLVAKA RSSQSLMRKP+ LTV KVFNTF LIAKESGKDSQEKKKNHIK LLVA
Sbjct: 194 KALGDLGLVAKACRSSQSLMRKPDPLTVAKVFNTFGLIAKESGKDSQEKKKNHIKTLLVA 253
Query: 361 ATDCEPQYLIRLLQTKLRIGLAEQTLL 441
ATDCEPQYLIRLLQTKLRIGLAEQTLL
Sbjct: 254 ATDCEPQYLIRLLQTKLRIGLAEQTLL 280
>ref|XP_002314303.1| predicted protein [Populus trichocarpa] gi|222850711|gb|EEE88258.1|
predicted protein [Populus trichocarpa]
Length = 684
Score = 662 bits (1707), Expect(2) = 0.0
Identities = 320/383 (83%), Positives = 356/383 (92%)
Frame = +3
Query: 561 HIDSPLEEAAKIVKQVYSVIPVYDKIVPAILIGGVWNLPKTCNFSPGVPVGPMLAKPTKG 740
HI SPLEEAAKIVKQVYSV+PVYDKIVPA+L GVWNLPKTC+F+PGVPVGPMLAKPTKG
Sbjct: 260 HIQSPLEEAAKIVKQVYSVLPVYDKIVPALLSDGVWNLPKTCSFTPGVPVGPMLAKPTKG 319
Query: 741 VSEILDKFQDMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVAAISRLKK 920
VSEI+ KFQDMEF+CEYKYDGERAQIHY+E+GSVEIYSRN+ERNTGKFPDVVA ISRLK+
Sbjct: 320 VSEIVTKFQDMEFSCEYKYDGERAQIHYLENGSVEIYSRNSERNTGKFPDVVAVISRLKR 379
Query: 921 SSVSSFVLDCELVAYDREKKKILPFQVLSTRARKNVVLDDIKVEVCIFAFDILYLNGQTL 1100
S SSF+LDCELVAYDREKKKILPFQ+LSTRARKNVV+ DIKV VCI+AFD+LYLN Q L
Sbjct: 380 PSASSFILDCELVAYDREKKKILPFQILSTRARKNVVMSDIKVNVCIYAFDMLYLNDQPL 439
Query: 1101 LQEQLNVRKEHLYESFEEEPGYFQFATAITSTDLEEIQKFLENSVDASCEGLIIKTLSRD 1280
+Q++L VR+EHLY SFEEEPG+FQFATAITS DLEEIQKFL+ +VDASCEGLIIKT+++D
Sbjct: 440 IQKELKVRREHLYSSFEEEPGFFQFATAITSNDLEEIQKFLDTAVDASCEGLIIKTMNKD 499
Query: 1281 ATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIAAFNGRGKRTGVYGAFLLACYDSNNESF 1460
ATYEPS+RS+NWLKLKKDYMESIGDSLDLVPI AF+GRGKRTGVYGAFLLACY+SNNE F
Sbjct: 500 ATYEPSRRSHNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYNSNNEEF 559
Query: 1461 QTICKIGTGFSEVVLEQRSTSLRSKVIPKAKTYYRYADKISPDVWFEPTEVWEVKAADLT 1640
Q+ICKIGTGFSE VLE+RS SLRS+VIPK K+YYR+ D I PDVWFEP EVWEVKAADLT
Sbjct: 560 QSICKIGTGFSEQVLEERSASLRSQVIPKPKSYYRFGDTIKPDVWFEPKEVWEVKAADLT 619
Query: 1641 ISPVYCAAIGIVDSDKGISLRFP 1709
ISPV+ AAIG VD +KGISLRFP
Sbjct: 620 ISPVHRAAIGEVDPNKGISLRFP 642
Score = 250 bits (638), Expect(2) = 0.0
Identities = 126/147 (85%), Positives = 139/147 (94%)
Frame = +1
Query: 1 NMLRTVIQTSPDDLVPVVYLLANRIAPAHEGLELGIGDASIIKALAEACGCKEAQIKKQY 180
NMLRTV+ T+P+DLV VVYLLAN++APAHEG+ELGIG+A IIKALAEACG KE ++KKQY
Sbjct: 95 NMLRTVMDTTPEDLVAVVYLLANKVAPAHEGVELGIGEALIIKALAEACGRKEKEVKKQY 154
Query: 181 KDLGDLGLVAKASRSSQSLMRKPEALTVTKVFNTFQLIAKESGKDSQEKKKNHIKALLVA 360
KDLGDLGLVAKASRSSQS+MRKP+ LT+TKVFNTFQ IAKESGKDSQ+KKKNHIKALLVA
Sbjct: 155 KDLGDLGLVAKASRSSQSMMRKPDPLTITKVFNTFQQIAKESGKDSQDKKKNHIKALLVA 214
Query: 361 ATDCEPQYLIRLLQTKLRIGLAEQTLL 441
ATDCEP YLIRLLQTKLRIGLAEQTLL
Sbjct: 215 ATDCEPLYLIRLLQTKLRIGLAEQTLL 241
>ref|XP_004160093.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 1-like [Cucumis sativus]
Length = 801
Score = 654 bits (1687), Expect(2) = 0.0
Identities = 314/383 (81%), Positives = 354/383 (92%)
Frame = +3
Query: 561 HIDSPLEEAAKIVKQVYSVIPVYDKIVPAILIGGVWNLPKTCNFSPGVPVGPMLAKPTKG 740
+I SPLEEA+KIVKQVYS++PVYDK+VPA+L GGVWNL KTCNF+PG+P+GPMLAKPTKG
Sbjct: 378 NIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKG 437
Query: 741 VSEILDKFQDMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVAAISRLKK 920
VSEIL+KFQ +EFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVV +SR+KK
Sbjct: 438 VSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKK 497
Query: 921 SSVSSFVLDCELVAYDREKKKILPFQVLSTRARKNVVLDDIKVEVCIFAFDILYLNGQTL 1100
SV SF+LDCELVAYDR K+KILPFQ+LSTRARKNV + DIKVEVC+FAFD+LYL+GQ L
Sbjct: 498 PSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPL 557
Query: 1101 LQEQLNVRKEHLYESFEEEPGYFQFATAITSTDLEEIQKFLENSVDASCEGLIIKTLSRD 1280
+Q +LNVR+E LY SF EE GYFQFATAI + DLEEIQKFL+ SVD SCEGLIIKTL+RD
Sbjct: 558 IQRELNVRRELLYNSFIEESGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRD 617
Query: 1281 ATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIAAFNGRGKRTGVYGAFLLACYDSNNESF 1460
ATYEPSKRS+NWLKLKKDY++SIGDSLDLVPIAAF+GRGKRTGVYGAFLLACYD++NE F
Sbjct: 618 ATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEF 677
Query: 1461 QTICKIGTGFSEVVLEQRSTSLRSKVIPKAKTYYRYADKISPDVWFEPTEVWEVKAADLT 1640
Q+ICKIGTGFSE +LE+RS SLRSKVIP+ K+YYRY D I+PDVWFEPTEVWEVKAADLT
Sbjct: 678 QSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLT 737
Query: 1641 ISPVYCAAIGIVDSDKGISLRFP 1709
ISPV+ A +GIVDSDKGISLRFP
Sbjct: 738 ISPVHRAGVGIVDSDKGISLRFP 760
Score = 250 bits (639), Expect(2) = 0.0
Identities = 129/147 (87%), Positives = 140/147 (95%)
Frame = +1
Query: 1 NMLRTVIQTSPDDLVPVVYLLANRIAPAHEGLELGIGDASIIKALAEACGCKEAQIKKQY 180
NMLRTV+ T+PDDLV VYLLAN+IAPAHEGLELGIGDASIIKAL+EA G EAQ+KKQY
Sbjct: 213 NMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQY 272
Query: 181 KDLGDLGLVAKASRSSQSLMRKPEALTVTKVFNTFQLIAKESGKDSQEKKKNHIKALLVA 360
K+LGDLGLVAKASRSSQS+MRKP+ALTVTKVF+TF+LIAKESGKDSQEKKKNHIK+LLVA
Sbjct: 273 KELGDLGLVAKASRSSQSMMRKPDALTVTKVFDTFRLIAKESGKDSQEKKKNHIKSLLVA 332
Query: 361 ATDCEPQYLIRLLQTKLRIGLAEQTLL 441
ATDCEP YLIRLLQTKLRIGLAEQTLL
Sbjct: 333 ATDCEPLYLIRLLQTKLRIGLAEQTLL 359
>ref|XP_004145818.1| PREDICTED: DNA ligase 1-like [Cucumis sativus]
Length = 801
Score = 654 bits (1687), Expect(2) = 0.0
Identities = 314/383 (81%), Positives = 354/383 (92%)
Frame = +3
Query: 561 HIDSPLEEAAKIVKQVYSVIPVYDKIVPAILIGGVWNLPKTCNFSPGVPVGPMLAKPTKG 740
+I SPLEEA+KIVKQVYS++PVYDK+VPA+L GGVWNL KTCNF+PG+P+GPMLAKPTKG
Sbjct: 378 NIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKG 437
Query: 741 VSEILDKFQDMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVAAISRLKK 920
VSEIL+KFQ +EFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVV +SR+KK
Sbjct: 438 VSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKK 497
Query: 921 SSVSSFVLDCELVAYDREKKKILPFQVLSTRARKNVVLDDIKVEVCIFAFDILYLNGQTL 1100
SV SF+LDCELVAYDR K+KILPFQ+LSTRARKNV + DIKVEVC+FAFD+LYL+GQ L
Sbjct: 498 PSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPL 557
Query: 1101 LQEQLNVRKEHLYESFEEEPGYFQFATAITSTDLEEIQKFLENSVDASCEGLIIKTLSRD 1280
+Q +LNVR+E LY SF EE GYFQFATAI + DLEEIQKFL+ SVD SCEGLIIKTL+RD
Sbjct: 558 IQRELNVRRELLYNSFIEESGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRD 617
Query: 1281 ATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIAAFNGRGKRTGVYGAFLLACYDSNNESF 1460
ATYEPSKRS+NWLKLKKDY++SIGDSLDLVPIAAF+GRGKRTGVYGAFLLACYD++NE F
Sbjct: 618 ATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEF 677
Query: 1461 QTICKIGTGFSEVVLEQRSTSLRSKVIPKAKTYYRYADKISPDVWFEPTEVWEVKAADLT 1640
Q+ICKIGTGFSE +LE+RS SLRSKVIP+ K+YYRY D I+PDVWFEPTEVWEVKAADLT
Sbjct: 678 QSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLT 737
Query: 1641 ISPVYCAAIGIVDSDKGISLRFP 1709
ISPV+ A +GIVDSDKGISLRFP
Sbjct: 738 ISPVHRAGVGIVDSDKGISLRFP 760
Score = 250 bits (639), Expect(2) = 0.0
Identities = 129/147 (87%), Positives = 140/147 (95%)
Frame = +1
Query: 1 NMLRTVIQTSPDDLVPVVYLLANRIAPAHEGLELGIGDASIIKALAEACGCKEAQIKKQY 180
NMLRTV+ T+PDDLV VYLLAN+IAPAHEGLELGIGDASIIKAL+EA G EAQ+KKQY
Sbjct: 213 NMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQY 272
Query: 181 KDLGDLGLVAKASRSSQSLMRKPEALTVTKVFNTFQLIAKESGKDSQEKKKNHIKALLVA 360
K+LGDLGLVAKASRSSQS+MRKP+ALTVTKVF+TF+LIAKESGKDSQEKKKNHIK+LLVA
Sbjct: 273 KELGDLGLVAKASRSSQSMMRKPDALTVTKVFDTFRLIAKESGKDSQEKKKNHIKSLLVA 332
Query: 361 ATDCEPQYLIRLLQTKLRIGLAEQTLL 441
ATDCEP YLIRLLQTKLRIGLAEQTLL
Sbjct: 333 ATDCEPLYLIRLLQTKLRIGLAEQTLL 359
>dbj|BAE71211.1| putative DNA ligase [Trifolium pratense]
Length = 682
Score = 632 bits (1631), Expect(2) = 0.0
Identities = 306/382 (80%), Positives = 347/382 (90%)
Frame = +3
Query: 564 IDSPLEEAAKIVKQVYSVIPVYDKIVPAILIGGVWNLPKTCNFSPGVPVGPMLAKPTKGV 743
I SP EEAA+IVK+VYSV+P YDKIV A+L GVW LPK C+F+PGVPVGPML+K TKGV
Sbjct: 260 IKSPFEEAAQIVKKVYSVLPDYDKIVAALLTDGVWELPKKCDFTPGVPVGPMLSKATKGV 319
Query: 744 SEILDKFQDMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVAAISRLKKS 923
SEIL+KFQD+EFTCEYKYDGERAQIHY+E+GSVEIYSRNAERNTGKFPDVVAA+SRLKK+
Sbjct: 320 SEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKT 379
Query: 924 SVSSFVLDCELVAYDREKKKILPFQVLSTRARKNVVLDDIKVEVCIFAFDILYLNGQTLL 1103
+VSSF+LDCELVAYDR K++ILPFQVLSTRARKNV + DIKVEVC+FAFD+LYLNGQ LL
Sbjct: 380 TVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVEVCVFAFDLLYLNGQALL 439
Query: 1104 QEQLNVRKEHLYESFEEEPGYFQFATAITSTDLEEIQKFLENSVDASCEGLIIKTLSRDA 1283
QE L +R+EHLY SFEEE G+FQFAT+ TS D+EEIQKFL+ ++DASCEGLIIKTL DA
Sbjct: 440 QENLRIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDA 499
Query: 1284 TYEPSKRSNNWLKLKKDYMESIGDSLDLVPIAAFNGRGKRTGVYGAFLLACYDSNNESFQ 1463
TYEPSKRS NWLKLKKDYME+IGDSLDLVPI AF+GRGKRTGVYGAFLLACYD++NE FQ
Sbjct: 500 TYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQ 559
Query: 1464 TICKIGTGFSEVVLEQRSTSLRSKVIPKAKTYYRYADKISPDVWFEPTEVWEVKAADLTI 1643
+I KIGTGF E VLE+RSTSLRSKVIPK K+YY+Y + +PDVWFE +EVWEVKAADLTI
Sbjct: 560 SIAKIGTGFKEEVLEERSTSLRSKVIPKPKSYYQYGESTNPDVWFEASEVWEVKAADLTI 619
Query: 1644 SPVYCAAIGIVDSDKGISLRFP 1709
SPVY AA+G VDS+KGISLRFP
Sbjct: 620 SPVYRAAVGKVDSNKGISLRFP 641
Score = 242 bits (618), Expect(2) = 0.0
Identities = 125/147 (85%), Positives = 134/147 (91%)
Frame = +1
Query: 1 NMLRTVIQTSPDDLVPVVYLLANRIAPAHEGLELGIGDASIIKALAEACGCKEAQIKKQY 180
N+LRTVI T+P+DLVPVVYL ANRIAPAHEGLELGIGDASIIKALAEACG E QI+ QY
Sbjct: 94 NLLRTVIYTTPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEQQIRIQY 153
Query: 181 KDLGDLGLVAKASRSSQSLMRKPEALTVTKVFNTFQLIAKESGKDSQEKKKNHIKALLVA 360
K+ GDLGLVAKASRSSQS+MRKPE LT+ KVF TF LIAKESGKDSQEKKKNHIK+LLVA
Sbjct: 154 KEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFKTFHLIAKESGKDSQEKKKNHIKSLLVA 213
Query: 361 ATDCEPQYLIRLLQTKLRIGLAEQTLL 441
ATDCEP Y+IRLLQTKLRIG AEQTLL
Sbjct: 214 ATDCEPLYIIRLLQTKLRIGYAEQTLL 240