BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00016353
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containi...    96   2e-18
emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]    96   4e-18
ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16
ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|2...    74   1e-11
ref|XP_002869597.1| pentatricopeptide repeat-containing protein ...    71   1e-10

>ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 45/89 (50%), Positives = 62/89 (69%)
 Frame = -3

Query: 267 CLFENYLIMMTFRRISTLINSTIGIPSSCTTQVFIKCKNWNPIPLPHRTIPEPRGLDLDF 88
           C+  +  + + FR  STL+N     P+          ++WNPIP+PHRTIPEPRG DLDF
Sbjct: 81  CIQSSLPVSIPFRGFSTLLNGAAKTPNYM--------RSWNPIPVPHRTIPEPRGQDLDF 132

Query: 87  VNVAYSHLIHSDWRKLDELASGLTLFRVK 1
           VNVA+SHLI+SDW KL+ +++GLT +R+K
Sbjct: 133 VNVAHSHLINSDWAKLNSMSTGLTPYRMK 161


>emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 45/83 (54%), Positives = 60/83 (72%)
 Frame = -3

Query: 249 LIMMTFRRISTLINSTIGIPSSCTTQVFIKCKNWNPIPLPHRTIPEPRGLDLDFVNVAYS 70
           +I + FR  STL+N     P+          ++WNPIP+PHRTIPEPRG DLDFVNVA+S
Sbjct: 1   MISIPFRGFSTLLNGAAKTPNYM--------RSWNPIPVPHRTIPEPRGQDLDFVNVAHS 52

Query: 69  HLIHSDWRKLDELASGLTLFRVK 1
           HLI+SDW KL+ +++GLT +R+K
Sbjct: 53  HLINSDWAKLNSMSTGLTPYRMK 75


>ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
           gi|449528063|ref|XP_004171026.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 46/82 (56%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
 Frame = -3

Query: 240 MTFRRISTLINSTIGIPSSCTTQVFIKC--KNWNPIPLPHRTIPEPRGLDLDFVNVAYSH 67
           + FRR STL+ S     +S + +  +    +N + IP+PHR+IPEPRG DLDFVNV +SH
Sbjct: 4   LPFRRFSTLLGSVPRTYASISPKFDLSLGKRNRDSIPIPHRSIPEPRGPDLDFVNVVHSH 63

Query: 66  LIHSDWRKLDELASGLTLFRVK 1
           LIHSDW KLD L+ GLT FRVK
Sbjct: 64  LIHSDWSKLDCLSMGLTAFRVK 85


>ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|222861287|gb|EEE98829.1|
           predicted protein [Populus trichocarpa]
          Length = 478

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = -3

Query: 138 PLPHRTIPEPRGLDLDFVNVAYSHLIHSDWRKLDELASGLTLFRV 4
           P+PHRTIPEP+G DLDFVNV +SHLIHSDW KL++L++  T FRV
Sbjct: 1   PIPHRTIPEPKGQDLDFVNVVHSHLIHSDWDKLNKLSTHFTPFRV 45


>ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297315433|gb|EFH45856.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 538

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 32/47 (68%), Positives = 39/47 (82%)
 Frame = -3

Query: 141 IPLPHRTIPEPRGLDLDFVNVAYSHLIHSDWRKLDELASGLTLFRVK 1
           IP+PHR+ PEP+G DLDFVNVA+SHLI SDW KL++L+  L  FRVK
Sbjct: 39  IPIPHRSNPEPKGQDLDFVNVAHSHLIQSDWDKLNKLSDHLDSFRVK 85