BLASTX nr result

ID: Bupleurum21_contig00016167 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00016167
         (387 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267846.2| PREDICTED: ycf20-like protein [Vitis vinifer...   127   1e-27
ref|XP_002312200.1| predicted protein [Populus trichocarpa] gi|2...   105   3e-21
ref|XP_002514798.1| conserved hypothetical protein [Ricinus comm...   101   5e-20
gb|AFK43635.1| unknown [Medicago truncatula]                           84   2e-14
ref|XP_004139097.1| PREDICTED: ycf20-like protein-like [Cucumis ...    81   1e-13

>ref|XP_002267846.2| PREDICTED: ycf20-like protein [Vitis vinifera]
           gi|298205056|emb|CBI38352.3| unnamed protein product
           [Vitis vinifera]
          Length = 225

 Score =  127 bits (318), Expect = 1e-27
 Identities = 64/122 (52%), Positives = 84/122 (68%)
 Frame = +2

Query: 20  RI*SVMLHLSLSLKGNQISQASFHILQHCDTVLNWHTERTYRCKPTFKLGITPIPFPAKS 199
           R+  +ML  +LS+  ++ S  S+     C T+ NW+ E ++  + + KLG+   PFP KS
Sbjct: 20  RMGGIMLQSTLSVPESESSDCSYITFTTCCTIQNWNNEPSFSGQIS-KLGMKSAPFPRKS 78

Query: 200 SRARRLNWKIRLALNTGGVPSNGGQENTSGDGPGLGQTRLGRLVSAGGRQLLQKLNSTRK 379
            + RR  WK   AL+TGG+P NGGQEN +G+GP LGQTRLGR+VSAGGRQLL KLNS RK
Sbjct: 79  FQTRRHGWKTAFALDTGGIPDNGGQENLNGNGPDLGQTRLGRIVSAGGRQLLAKLNSARK 138

Query: 380 NF 385
           NF
Sbjct: 139 NF 140


>ref|XP_002312200.1| predicted protein [Populus trichocarpa] gi|222852020|gb|EEE89567.1|
           predicted protein [Populus trichocarpa]
          Length = 213

 Score =  105 bits (263), Expect = 3e-21
 Identities = 58/118 (49%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +2

Query: 35  MLHLSLSLKGNQISQASFHILQHCDTVLNWHTERTYRCKPTFKLGITPIPFPAKSSRARR 214
           ML   LS+  N++S+ +   +  C  + N ++E ++  + + K+GI  +PF     + RR
Sbjct: 13  MLQSGLSVMVNEVSERTCITIATC-AMQNRNSEPSFSGQAS-KIGIKFVPFQKTRFQLRR 70

Query: 215 LNWKIRLALNTGGVPSNGGQENTSGDG-PGLGQTRLGRLVSAGGRQLLQKLNSTRKNF 385
             W+I  AL+TGG+P NGGQEN +GD  PGLG TRLGR+VSAGGRQLL+KLNS RKNF
Sbjct: 71  QGWRIAFALDTGGLPGNGGQENVNGDSPPGLGGTRLGRIVSAGGRQLLEKLNSARKNF 128


>ref|XP_002514798.1| conserved hypothetical protein [Ricinus communis]
           gi|223545849|gb|EEF47352.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 201

 Score =  101 bits (252), Expect = 5e-20
 Identities = 55/118 (46%), Positives = 74/118 (62%)
 Frame = +2

Query: 32  VMLHLSLSLKGNQISQASFHILQHCDTVLNWHTERTYRCKPTFKLGITPIPFPAKSSRAR 211
           ++L  S+S+   ++S+ S   L  C  + NW  E T+  +   K+G+    F  K  +  
Sbjct: 1   MVLQSSVSVMEGEVSERSCITLTIC-AMQNWSVEPTFS-RQIPKIGLKSASFLRKRFKLS 58

Query: 212 RLNWKIRLALNTGGVPSNGGQENTSGDGPGLGQTRLGRLVSAGGRQLLQKLNSTRKNF 385
             +W+I  AL+TGG+  NGG+EN  GD  GLG TRLGR+VSAGGRQLLQKLNS RKNF
Sbjct: 59  GQDWRIPFALDTGGISGNGGEENLDGDSSGLGSTRLGRIVSAGGRQLLQKLNSARKNF 116


>gb|AFK43635.1| unknown [Medicago truncatula]
          Length = 201

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
 Frame = +2

Query: 146 CKPTFK-----LGITPIPFPAKSSRARRLNWKIRLALNTGGVPSNGGQENTSGDGPGLGQ 310
           C+P F      +G+ P+PF       RR  W +  ALNT G+  NG Q++ +  G  LG 
Sbjct: 32  CQPRFSALTPNVGMKPLPFLQSRFLRRRPGWTVAFALNTDGLSGNGEQQSLNDSGSSLGG 91

Query: 311 TRLGRLVSAGGRQLLQKLNSTRKNF 385
           TRLGR++SAGGRQLL KLNS RKNF
Sbjct: 92  TRLGRILSAGGRQLLDKLNSARKNF 116


>ref|XP_004139097.1| PREDICTED: ycf20-like protein-like [Cucumis sativus]
          Length = 212

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
 Frame = +2

Query: 29  SVMLHLSLSLKGNQISQASFHILQHCDTVLNWHTERTYRCKPTFKLGITPIPFPAKSSRA 208
           +V+LH  L    N   Q S      C  +  W  E  +  + +  L +   PFP KS + 
Sbjct: 10  AVILHSRLLTTANYSPQVSCLTNMPC-LIHYWGYEAIFNGRSSSFL-LKSAPFPRKSLQT 67

Query: 209 RRLNWKIRLALNTGGVPSNGGQENTS-GDGPGLGQTRLGRLVSAGGRQLLQKLNSTRKNF 385
            R   K+  AL+TGGV S+GG +N   GD   LG+TRLGRLVS+G RQLL+KLNS RKNF
Sbjct: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127


Top