BLASTX nr result

ID: Bupleurum21_contig00016159 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00016159
         (273 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272993.1| PREDICTED: uncharacterized protein LOC100246...    59   5e-07
ref|XP_002320502.1| predicted protein [Populus trichocarpa] gi|2...    58   7e-07
ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C,...    57   2e-06
ref|XP_003631031.1| Heterogeneous nuclear ribonucleoprotein A1 [...    56   3e-06
ref|XP_003617976.1| Heterogeneous nuclear ribonucleoprotein A1, ...    56   3e-06

>ref|XP_002272993.1| PREDICTED: uncharacterized protein LOC100246008 [Vitis vinifera]
          Length = 478

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 24/58 (41%), Positives = 35/58 (60%)
 Frame = +1

Query: 4   GMTPNFVGNANFNSSINYGRGMNPYYVANSNRFTXXXXXXXXXXXXXXXXXXPTRNLW 177
           G++ ++ G+ANFN+++NYGRG+NPYY+ N+NRF                    TRNLW
Sbjct: 258 GLSQSYGGSANFNNNLNYGRGLNPYYIGNTNRFNSTIGYDGGNGGNSSFFSSATRNLW 315


>ref|XP_002320502.1| predicted protein [Populus trichocarpa] gi|222861275|gb|EEE98817.1|
           predicted protein [Populus trichocarpa]
          Length = 479

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 25/57 (43%), Positives = 33/57 (57%)
 Frame = +1

Query: 7   MTPNFVGNANFNSSINYGRGMNPYYVANSNRFTXXXXXXXXXXXXXXXXXXPTRNLW 177
           ++P++ GNANFNS+++YGRGMNPYY+ NSN                      TRNLW
Sbjct: 260 LSPSYGGNANFNSNLSYGRGMNPYYIGNSNSLARPVGYDGGNGGNTSFFSSATRNLW 316


>ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
           communis] gi|223528341|gb|EEF30383.1| Heterogeneous
           nuclear ribonucleoprotein 27C, putative [Ricinus
           communis]
          Length = 484

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +1

Query: 10  TPNFVGNANFNSSINYGRGMNPYYVANSNRFTXXXXXXXXXXXXXXXXXXPTRNLW 177
           +P++ GNANF+S+++YGRGM+PYY+ N+NRF                    TRNLW
Sbjct: 261 SPSYGGNANFSSNLSYGRGMSPYYIGNTNRFANPTGYDGGNGGNSSFFSSVTRNLW 316


>ref|XP_003631031.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
           gi|355525053|gb|AET05507.1| Heterogeneous nuclear
           ribonucleoprotein A1 [Medicago truncatula]
          Length = 476

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +1

Query: 4   GMTPNFVGNANFNSSINYGRGMNPYYVANSNRFTXXXXXXXXXXXXXXXXXXPTRNLW 177
           G++P F GNA+FN +++YGRG+NPY++  SNRF                    TRNLW
Sbjct: 241 GLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGNGGSNSFFSSVTRNLW 298


>ref|XP_003617976.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like protein
           [Medicago truncatula] gi|355519311|gb|AET00935.1|
           Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like
           protein [Medicago truncatula]
          Length = 479

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +1

Query: 4   GMTPNFVGNANFNSSINYGRGMNPYYVANSNRFTXXXXXXXXXXXXXXXXXXPTRNLW 177
           G++P F GNA+FN +++YGRG+NPY++  SNRF                    TRNLW
Sbjct: 258 GLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGNGGSNSFFSSVTRNLW 315


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