BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00015904
         (517 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   165   4e-39
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc...   156   1e-36
ref|XP_002310512.1| predicted protein [Populus trichocarpa] gi|2...   155   4e-36
ref|NP_175971.3| transcription initiation factor TFIIH subunit H...   152   4e-35
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab...   151   5e-35

>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score =  165 bits (417), Expect = 4e-39
 Identities = 80/125 (64%), Positives = 99/125 (79%), Gaps = 3/125 (2%)
 Frame = +1

Query: 1   QRISNTKYNLGKNPQNKFLDGLPNMTKEELLHQWTSIQELLKHYWSSYPITTTYLHIKVG 180
           Q IS+TK++LGKNPQ   LD LP +TKEELLH WTSIQELL+H+WSSYPITTTYL+ K  
Sbjct: 478 QNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKAS 537

Query: 181 KVKEAMGKIQEKLQEFKSSVPHELRHPVSLLVKPMIQAIEAASEHYDAE---RSTKSVDR 351
           ++K+AM +I  KLQE K SV  + RH VSLLV+PM+QA++AA  HYDA+   RS +S +R
Sbjct: 538 RLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRSARSGER 597

Query: 352 PNGFV 366
           PNGFV
Sbjct: 598 PNGFV 602


>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Cucumis sativus]
          Length = 729

 Score =  156 bits (395), Expect = 1e-36
 Identities = 76/124 (61%), Positives = 96/124 (77%), Gaps = 3/124 (2%)
 Frame = +1

Query: 1   QRISNTKYNLGKNPQNKFLDGLPNMTKEELLHQWTSIQELLKHYWSSYPITTTYLHIKVG 180
           Q IS+TKY LGKNPQ   L+ LPN TKEELLH W SIQELLKH+WSSYPITT+YL+ KV 
Sbjct: 605 QNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVS 664

Query: 181 KVKEAMGKIQEKLQEFKSSVPHELRHPVSLLVKPMIQAIEAASEHYDAE---RSTKSVDR 351
           ++K+AM KI  +L+E K +V  + RH VSLLV+PM QA++AA +H+DA+   RS KS +R
Sbjct: 665 RLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGER 724

Query: 352 PNGF 363
            NG+
Sbjct: 725 LNGY 728


>ref|XP_002310512.1| predicted protein [Populus trichocarpa] gi|222853415|gb|EEE90962.1|
           predicted protein [Populus trichocarpa]
          Length = 603

 Score =  155 bits (391), Expect = 4e-36
 Identities = 77/122 (63%), Positives = 94/122 (77%), Gaps = 3/122 (2%)
 Frame = +1

Query: 7   ISNTKYNLGKNPQNKFLDGLPNMTKEELLHQWTSIQELLKHYWSSYPITTTYLHIKVGKV 186
           IS+TKY+ GKN     LD LPN  KEELL+ WTS+QELLKHYWSSYPITTTYL+ KV ++
Sbjct: 481 ISSTKYDTGKNHGLSVLDTLPNTIKEELLYHWTSLQELLKHYWSSYPITTTYLYTKVSRL 540

Query: 187 KEAMGKIQEKLQEFKSSVPHELRHPVSLLVKPMIQAIEAASEHYDAE---RSTKSVDRPN 357
           K+AM KI  +LQE K SV  +LRH V+LL++PM QA+EAA +HYDAE   RS +S DR N
Sbjct: 541 KDAMSKIDSQLQELKESVQSDLRHQVTLLLRPMQQALEAAMQHYDAELQKRSARSGDRSN 600

Query: 358 GF 363
           G+
Sbjct: 601 GY 602


>ref|NP_175971.3| transcription initiation factor TFIIH subunit H1 [Arabidopsis
           thaliana] gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
           Full=Probable RNA polymerase II transcription factor B
           subunit 1-1; AltName: Full=General transcription and DNA
           repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
           Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332195172|gb|AEE33293.1| transcription initiation
           factor TFIIH subunit H1 [Arabidopsis thaliana]
          Length = 591

 Score =  152 bits (383), Expect = 4e-35
 Identities = 74/123 (60%), Positives = 91/123 (73%), Gaps = 3/123 (2%)
 Frame = +1

Query: 7   ISNTKYNLGKNPQNKFLDGLPNMTKEELLHQWTSIQELLKHYWSSYPITTTYLHIKVGKV 186
           I+  K   GKNP+  FLD LP  TK+E+LH WTSIQELLKH+WSSYPITTTYLH KVGK+
Sbjct: 469 IATAKNINGKNPRESFLDRLPKSTKDEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKL 528

Query: 187 KEAMGKIQEKLQEFKSSVPHELRHPVSLLVKPMIQAIEAASEHYDAE---RSTKSVDRPN 357
           K+AM     KL+  K SV  +LRH VSLLV+PM QA++AA  HY+ +   R+ KS +RPN
Sbjct: 529 KDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFHHYEVDLQRRTAKSGERPN 588

Query: 358 GFV 366
           G+V
Sbjct: 589 GYV 591


>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
           lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
           ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
          Length = 592

 Score =  151 bits (382), Expect = 5e-35
 Identities = 75/124 (60%), Positives = 94/124 (75%), Gaps = 4/124 (3%)
 Frame = +1

Query: 7   ISNTKYNLGKNPQNKFLDGLPNMTKEELLHQWTSIQELLKHYWSSYPITTTYLHIKVGKV 186
           IS  K  +GKNP+  FLD LP  TK+E+LH WTSIQELL+H+WSSYPITTTYLH KVGK+
Sbjct: 469 ISTAKNIIGKNPRESFLDRLPKSTKDEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKL 528

Query: 187 KEAMGKIQEKLQEFKSSVPHELRHPVSLLVKPMIQAIEAASEHYDAE---RSTKS-VDRP 354
           K+AM     KL+  K SV  +LRH VSLLV+PM QA++AA +HY+A+   R+ KS  +RP
Sbjct: 529 KDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFQHYEADLQRRTAKSGGERP 588

Query: 355 NGFV 366
           NG+V
Sbjct: 589 NGYV 592