BLASTX nr result

ID: Bupleurum21_contig00015424 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00015424
         (759 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273302.1| PREDICTED: uncharacterized protein LOC100266...   219   6e-55
ref|XP_002514596.1| splicing factor, arginine/serine-rich 2,rnap...   189   4e-46
ref|XP_003549584.1| PREDICTED: LOW QUALITY PROTEIN: PHD and RING...   170   3e-40
dbj|BAK03897.1| predicted protein [Hordeum vulgare subsp. vulgare]    153   4e-35
ref|XP_004171857.1| PREDICTED: uncharacterized protein LOC101229...   152   1e-34

>ref|XP_002273302.1| PREDICTED: uncharacterized protein LOC100266325 [Vitis vinifera]
           gi|297734114|emb|CBI15361.3| unnamed protein product
           [Vitis vinifera]
          Length = 648

 Score =  219 bits (557), Expect = 6e-55
 Identities = 104/196 (53%), Positives = 128/196 (65%)
 Frame = +3

Query: 99  KTVYSPSPSHNCRKSSKLNDESSTNSCGICLSEEGKSVRGCIDSCEHYFCFLCIIEWAKV 278
           +T+ S   ++ C K+ +  D  S N CGICL E+ +++RG +DSC+HYFCF+CI+EWAKV
Sbjct: 28  ETLGSDISANQCPKAKEAVDFDS-NCCGICLLEDDRAIRGWVDSCDHYFCFVCIMEWAKV 86

Query: 279 ESRCPLCKRRFSVIRRPVKPGVFATERIVSAPVRDQAYHHFGIVTTGPQNPYAEVQCTVC 458
           ESRCP+CKRRFS IRRP KPGVF +ERIV+ PVRDQAYHHFG VTTGP +PYAEV C +C
Sbjct: 87  ESRCPMCKRRFSTIRRPPKPGVFPSERIVNVPVRDQAYHHFGNVTTGPSDPYAEVDCGIC 146

Query: 459 HSTSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASHTYCVGLGVTVPEGDW 638
           H T+D+                                   SA+HTYCVGLG TVPEGDW
Sbjct: 147 HGTADE-------------------------SFLLICDLCDSAAHTYCVGLGHTVPEGDW 181

Query: 639 LCGDCALLRDEHAKDD 686
            C DC + R EHA  +
Sbjct: 182 FCHDCTVSRAEHANGE 197


>ref|XP_002514596.1| splicing factor, arginine/serine-rich 2,rnap interacting protein,
           putative [Ricinus communis] gi|223546200|gb|EEF47702.1|
           splicing factor, arginine/serine-rich 2,rnap interacting
           protein, putative [Ricinus communis]
          Length = 632

 Score =  189 bits (481), Expect = 4e-46
 Identities = 99/210 (47%), Positives = 124/210 (59%), Gaps = 11/210 (5%)
 Frame = +3

Query: 78  NSPNK-----TPKT-VYSPSPSHNC--RKSSKLNDESSTNS---CGICLSEEGKSVRGCI 224
           NSPNK     TP + V   S  ++   R+ ++L    ST     CGICLSE   ++RG I
Sbjct: 4   NSPNKRLKILTPNSRVKQESDEYDFEGRQGNRLTPMESTGESLICGICLSENWSAMRGQI 63

Query: 225 DSCEHYFCFLCIIEWAKVESRCPLCKRRFSVIRRPVKPGVFATERIVSAPVRDQAYHHFG 404
           DSC+HYFCF+CI+EWAK+ESRCP+CKRRF+ I RP K GVF +ER+V+ P RDQ YH FG
Sbjct: 64  DSCDHYFCFICIMEWAKIESRCPMCKRRFNNIHRPPKDGVFPSERLVNVPKRDQVYHLFG 123

Query: 405 IVTTGPQNPYAEVQCTVCHSTSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 584
             T  P +PYA+VQC++CH+  D+                                   S
Sbjct: 124 NTTVEPFDPYAQVQCSICHTAEDE-------------------------SLLLLCDLCDS 158

Query: 585 ASHTYCVGLGVTVPEGDWLCGDCALLRDEH 674
           A+HTYCVGLG TVPE DW C DCA+ R EH
Sbjct: 159 AAHTYCVGLGFTVPECDWFCHDCAVSRTEH 188


>ref|XP_003549584.1| PREDICTED: LOW QUALITY PROTEIN: PHD and RING finger
           domain-containing protein 1-like [Glycine max]
          Length = 182

 Score =  170 bits (431), Expect = 3e-40
 Identities = 83/190 (43%), Positives = 106/190 (55%)
 Frame = +3

Query: 117 SPSHNCRKSSKLNDESSTNSCGICLSEEGKSVRGCIDSCEHYFCFLCIIEWAKVESRCPL 296
           SP    R  ++  DE     CGIC +E G S+ G ID C H+FCF+CI+EWAK ESRCP+
Sbjct: 8   SPKKRLRAQTEEEDEEEVVCCGICYAESGVSIAGEIDCCSHHFCFVCIMEWAKHESRCPI 67

Query: 297 CKRRFSVIRRPVKPGVFATERIVSAPVRDQAYHHFGIVTTGPQNPYAEVQCTVCHSTSDD 476
           C++RFS +RR    GVF++ R V  P RDQ YH  G + TGP + Y E +C VCH+ +D+
Sbjct: 68  CRQRFSNVRRLPMHGVFSSSRDVKVPHRDQLYHPHGNMATGPADSYTETKCGVCHAGTDE 127

Query: 477 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASHTYCVGLGVTVPEGDWLCGDCA 656
                                              +ASHTYCVGLG TVPEGDW C DCA
Sbjct: 128 -------------------------HLLLLCDLCDTASHTYCVGLGYTVPEGDWFCHDCA 162

Query: 657 LLRDEHAKDD 686
           + R  + K+D
Sbjct: 163 ISRKINIKED 172


>dbj|BAK03897.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 948

 Score =  153 bits (386), Expect = 4e-35
 Identities = 79/208 (37%), Positives = 115/208 (55%), Gaps = 10/208 (4%)
 Frame = +3

Query: 120 PSHNCRKSSKLNDESSTNS---------CGICLSEEGKSVRGCIDSCEHYFCFLCIIEWA 272
           PS   +  ++++D++   +         CGIC ++  +++RG +D C H+FCF+CI+ WA
Sbjct: 12  PSSASKGKARMDDDAEAEALNLAPEGVPCGICFTDSRRAIRGELDCCAHHFCFVCIMAWA 71

Query: 273 KVESRCPLCKRRFSVIRRPVKPGVFATERIVSAPVRDQAYHHFGIVTT-GPQNPYAEVQC 449
           +VESRCP CK RF  IRRP  PG   +ERIV+   R+Q YH  G V++    +PYA   C
Sbjct: 72  RVESRCPFCKARFHTIRRPPVPGRLPSERIVNVAERNQVYHPRGNVSSLVSTDPYANSGC 131

Query: 450 TVCHSTSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASHTYCVGLGVTVPE 629
           +VC+ +SD+                                   +ASHTYCVGLG TVPE
Sbjct: 132 SVCNCSSDE-------------------------DLLLLCELCDAASHTYCVGLGTTVPE 166

Query: 630 GDWLCGDCALLRDEHAKDDEVVEADGSS 713
           GDW C DCA  ++EH++   +++  GSS
Sbjct: 167 GDWFCKDCATSKEEHSRC--LIDDGGSS 192


>ref|XP_004171857.1| PREDICTED: uncharacterized protein LOC101229274 [Cucumis sativus]
          Length = 398

 Score =  152 bits (383), Expect = 1e-34
 Identities = 84/235 (35%), Positives = 120/235 (51%), Gaps = 3/235 (1%)
 Frame = +3

Query: 30  ANPPSPKSKALIDLPQNSPNKTPKTVYSPSPSHNCRKSSKLNDESSTNSCGICLSEEGKS 209
           A+    + KALI  P  S     +  +         +S  L D++ ++ C IC SE+GK+
Sbjct: 10  ASSSEDRLKALISCPSASAKFGNEEEFLEG---GFEESHLLIDDNPSSICVICFSEDGKA 66

Query: 210 VRGCIDSCEHYFCFLCIIEWAKVESRCPLCKRRFSVIRRPVKPGVFATERIVSAPVRDQA 389
            RG +DSC+HYFCF+CI+EWA++ESRCP CK RF+V+ R  K      ERIV+ P+R+Q 
Sbjct: 67  ERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIAKDPCRLRERIVNIPMRNQD 126

Query: 390 YHHFGIVTTGPQNPYAEVQCTVCHSTSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 569
               G    G  +PYAE  CTVC    D+                               
Sbjct: 127 QSASGSARIG--DPYAETCCTVCKGMEDE-------------------------GLMLLC 159

Query: 570 XXXXSASHTYCVGLGVTVPEGDWLCGDCALLRDEHAK---DDEVVEADGSSSIDP 725
               SA+HT+CVGLG  VPEGDW C DC + R +H     D   ++ + +++++P
Sbjct: 160 DLCDSAAHTFCVGLGANVPEGDWYCHDCTIARAQHTDTELDTSFIKQNQTTTVEP 214


Top