BLASTX nr result
ID: Bupleurum21_contig00015384
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00015384
(1578 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI14894.3| unnamed protein product [Vitis vinifera] 629 e-178
ref|XP_002275673.1| PREDICTED: pentatricopeptide repeat-containi... 629 e-178
ref|XP_002516878.1| pentatricopeptide repeat-containing protein,... 598 e-168
ref|XP_004152584.1| PREDICTED: pentatricopeptide repeat-containi... 589 e-166
ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containi... 566 e-159
>emb|CBI14894.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 629 bits (1622), Expect = e-178
Identities = 303/379 (79%), Positives = 341/379 (89%)
Frame = +2
Query: 440 SGLFSCGRYDDAWKVYETMERNNVEPDHVTCSIMITIMRKNGNSAKDAWEFFEKLNKKES 619
SGL SCGRYDDAWKVY+ ME NN+ PDHVTCSIMIT+MRK+G+SAKDAWEFF+++N+K
Sbjct: 250 SGLSSCGRYDDAWKVYDEMETNNIRPDHVTCSIMITVMRKDGHSAKDAWEFFQRMNRKGV 309
Query: 620 KWTVEVIGALIKSFCVEGLKKEALIIQAEMEKKGIASNAIIYNTLMDAYGKSNQVEEAEG 799
KW++EV+GALIKSFC EGLK EALIIQ+EMEKKGI+SNAI+YNTLMDAY KSN+VEEAEG
Sbjct: 310 KWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLMDAYSKSNRVEEAEG 369
Query: 800 LFTEMNAKGIVPTTATYNILMDAYGRRMQPEIIEKLLIEMRNLGLEPNVKSYTCLISAYG 979
LF EM AKG++PT+ATYNILMDAY RRMQPEIIE LL+EM+++GLEPNVKSYTCLISAYG
Sbjct: 370 LFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTCLISAYG 429
Query: 980 RQKDMSDMAANAFLRMKKAGIEPTSHSYTALINAYSISGWHEKAYITFENLLGEGLKPAI 1159
RQK MSDMAA+AFLRMKK GI+PTSHSYTALI+AYS+ GWHEKAY FEN+ EG+KP+I
Sbjct: 430 RQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKAYTAFENMKREGIKPSI 489
Query: 1160 ETYTALLDAFRRAGDSQTLXXXXXXXXXXXXEGTRVTFNILLDGFAKQGHYTEARDVICE 1339
ETYTALLDAFRRAGD+QTL EGTRVTFNILLDGFAKQGHY EARDVI E
Sbjct: 490 ETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLDGFAKQGHYMEARDVIFE 549
Query: 1340 FGKIGYKPTVLTYNMLMNAYARGGQDSKLPQLLNEMAGLNLKPDSVTYSTMIYAFVRVRD 1519
FGKIG++PTV+TYNMLMNAYARGGQ S+LPQLL EM LNLKPDS+TYSTMIYA+VRVRD
Sbjct: 550 FGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKPDSITYSTMIYAYVRVRD 609
Query: 1520 FKRAFFYHKQMVKSGQLPD 1576
FKRAFFYHKQMVKSGQ+PD
Sbjct: 610 FKRAFFYHKQMVKSGQVPD 628
Score = 124 bits (311), Expect = 7e-26
Identities = 58/91 (63%), Positives = 76/91 (83%)
Frame = +3
Query: 27 QVLNLAKNLPQNKTLGEVLGDYEGKMGKTECVKLLELMSEEKGLVLSCLYFFEWMGLQKP 206
++L+ A+NLP+N TLGEVLG Y G++G+ ECV++L LM EE LV+ CLYFFEWMGLQ+P
Sbjct: 144 EILHFARNLPENSTLGEVLGPYVGRVGERECVEVLGLMCEED-LVMGCLYFFEWMGLQEP 202
Query: 207 SLISARACVIMFIVLGRAGMGDKLIVLFNNL 299
SL++ARAC ++F +LGRAGMGD L+VL NL
Sbjct: 203 SLVTARACSLLFPMLGRAGMGDDLMVLLRNL 233
>ref|XP_002275673.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic [Vitis vinifera]
gi|147821419|emb|CAN76897.1| hypothetical protein
VITISV_010606 [Vitis vinifera]
Length = 692
Score = 629 bits (1622), Expect = e-178
Identities = 303/379 (79%), Positives = 341/379 (89%)
Frame = +2
Query: 440 SGLFSCGRYDDAWKVYETMERNNVEPDHVTCSIMITIMRKNGNSAKDAWEFFEKLNKKES 619
SGL SCGRYDDAWKVY+ ME NN+ PDHVTCSIMIT+MRK+G+SAKDAWEFF+++N+K
Sbjct: 250 SGLSSCGRYDDAWKVYDEMETNNIRPDHVTCSIMITVMRKDGHSAKDAWEFFQRMNRKGV 309
Query: 620 KWTVEVIGALIKSFCVEGLKKEALIIQAEMEKKGIASNAIIYNTLMDAYGKSNQVEEAEG 799
KW++EV+GALIKSFC EGLK EALIIQ+EMEKKGI+SNAI+YNTLMDAY KSN+VEEAEG
Sbjct: 310 KWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLMDAYSKSNRVEEAEG 369
Query: 800 LFTEMNAKGIVPTTATYNILMDAYGRRMQPEIIEKLLIEMRNLGLEPNVKSYTCLISAYG 979
LF EM AKG++PT+ATYNILMDAY RRMQPEIIE LL+EM+++GLEPNVKSYTCLISAYG
Sbjct: 370 LFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTCLISAYG 429
Query: 980 RQKDMSDMAANAFLRMKKAGIEPTSHSYTALINAYSISGWHEKAYITFENLLGEGLKPAI 1159
RQK MSDMAA+AFLRMKK GI+PTSHSYTALI+AYS+ GWHEKAY FEN+ EG+KP+I
Sbjct: 430 RQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKAYTAFENMKREGIKPSI 489
Query: 1160 ETYTALLDAFRRAGDSQTLXXXXXXXXXXXXEGTRVTFNILLDGFAKQGHYTEARDVICE 1339
ETYTALLDAFRRAGD+QTL EGTRVTFNILLDGFAKQGHY EARDVI E
Sbjct: 490 ETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLDGFAKQGHYMEARDVIFE 549
Query: 1340 FGKIGYKPTVLTYNMLMNAYARGGQDSKLPQLLNEMAGLNLKPDSVTYSTMIYAFVRVRD 1519
FGKIG++PTV+TYNMLMNAYARGGQ S+LPQLL EM LNLKPDS+TYSTMIYA+VRVRD
Sbjct: 550 FGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKPDSITYSTMIYAYVRVRD 609
Query: 1520 FKRAFFYHKQMVKSGQLPD 1576
FKRAFFYHKQMVKSGQ+PD
Sbjct: 610 FKRAFFYHKQMVKSGQVPD 628
Score = 124 bits (311), Expect = 7e-26
Identities = 58/91 (63%), Positives = 76/91 (83%)
Frame = +3
Query: 27 QVLNLAKNLPQNKTLGEVLGDYEGKMGKTECVKLLELMSEEKGLVLSCLYFFEWMGLQKP 206
++L+ A+NLP+N TLGEVLG Y G++G+ ECV++L LM EE LV+ CLYFFEWMGLQ+P
Sbjct: 144 EILHFARNLPENSTLGEVLGPYVGRVGERECVEVLGLMCEED-LVMGCLYFFEWMGLQEP 202
Query: 207 SLISARACVIMFIVLGRAGMGDKLIVLFNNL 299
SL++ARAC ++F +LGRAGMGD L+VL NL
Sbjct: 203 SLVTARACSLLFPMLGRAGMGDDLMVLLRNL 233
>ref|XP_002516878.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543966|gb|EEF45492.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 714
Score = 598 bits (1541), Expect = e-168
Identities = 289/379 (76%), Positives = 326/379 (86%)
Frame = +2
Query: 440 SGLFSCGRYDDAWKVYETMERNNVEPDHVTCSIMITIMRKNGNSAKDAWEFFEKLNKKES 619
SGL C RYDDA KVYE ME NV PDHVTCSIMIT+MRKNG SAK+AWEFFEK+N+K
Sbjct: 270 SGLLYCQRYDDACKVYEAMEAQNVSPDHVTCSIMITMMRKNGRSAKEAWEFFEKMNRKGV 329
Query: 620 KWTVEVIGALIKSFCVEGLKKEALIIQAEMEKKGIASNAIIYNTLMDAYGKSNQVEEAEG 799
KW+ E++GAL+KSFC EGLK EALIIQ EM KKG SNAI+YNTLMDAY KSNQ+EE EG
Sbjct: 330 KWSPEILGALVKSFCDEGLKNEALIIQVEMAKKGAFSNAIVYNTLMDAYNKSNQIEEVEG 389
Query: 800 LFTEMNAKGIVPTTATYNILMDAYGRRMQPEIIEKLLIEMRNLGLEPNVKSYTCLISAYG 979
+F EM AKG+ PT+AT+NILMDAY RRMQPEI+E+LL+EM++ GL+P+ KSYTCLISAYG
Sbjct: 390 IFAEMKAKGLKPTSATFNILMDAYSRRMQPEIVEELLLEMQDAGLQPDAKSYTCLISAYG 449
Query: 980 RQKDMSDMAANAFLRMKKAGIEPTSHSYTALINAYSISGWHEKAYITFENLLGEGLKPAI 1159
RQ M+DMAANAFLRMKK GI+PTSHSYTALI+AYS+SGWHEKAY TFEN+ EG+KP+I
Sbjct: 450 RQNKMTDMAANAFLRMKKVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENMQTEGIKPSI 509
Query: 1160 ETYTALLDAFRRAGDSQTLXXXXXXXXXXXXEGTRVTFNILLDGFAKQGHYTEARDVICE 1339
ETYTALLDAFRR+GD+QTL EGTRVTFNILLDGFAKQGHY EARDVI E
Sbjct: 510 ETYTALLDAFRRSGDTQTLMRIWKMMMSEKVEGTRVTFNILLDGFAKQGHYVEARDVISE 569
Query: 1340 FGKIGYKPTVLTYNMLMNAYARGGQDSKLPQLLNEMAGLNLKPDSVTYSTMIYAFVRVRD 1519
FGK+G PTV+TYNMLMNAYARGGQ SKLPQLL EMA LNLKPDS+TY TMIYA++RVRD
Sbjct: 570 FGKLGLHPTVMTYNMLMNAYARGGQHSKLPQLLKEMATLNLKPDSITYLTMIYAYIRVRD 629
Query: 1520 FKRAFFYHKQMVKSGQLPD 1576
F+RAFFYHK MVKSGQ+PD
Sbjct: 630 FRRAFFYHKTMVKSGQVPD 648
Score = 118 bits (296), Expect = 4e-24
Identities = 54/94 (57%), Positives = 76/94 (80%)
Frame = +3
Query: 18 VMFQVLNLAKNLPQNKTLGEVLGDYEGKMGKTECVKLLELMSEEKGLVLSCLYFFEWMGL 197
++ ++LNLA+ LP+N LGE LG Y+GK+ ECV++LELM EE G+V SCLYFFEWM L
Sbjct: 161 IVREILNLARELPENTILGEQLGHYKGKISVEECVEVLELMGEE-GMVTSCLYFFEWMRL 219
Query: 198 QKPSLISARACVIMFIVLGRAGMGDKLIVLFNNL 299
+PSL+++R+C ++F +LG+AG GD+L+VLF NL
Sbjct: 220 HEPSLVTSRSCTVLFPILGKAGKGDELMVLFMNL 253
>ref|XP_004152584.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Cucumis sativus]
Length = 708
Score = 589 bits (1518), Expect = e-166
Identities = 287/379 (75%), Positives = 326/379 (86%)
Frame = +2
Query: 440 SGLFSCGRYDDAWKVYETMERNNVEPDHVTCSIMITIMRKNGNSAKDAWEFFEKLNKKES 619
SGL C RYDDA KVYE ME NNV PDHVTCSIMIT+MRK G SAKD+W++FEK+N+K
Sbjct: 266 SGLMVCKRYDDACKVYEAMETNNVNPDHVTCSIMITVMRKIGRSAKDSWDYFEKMNQKGV 325
Query: 620 KWTVEVIGALIKSFCVEGLKKEALIIQAEMEKKGIASNAIIYNTLMDAYGKSNQVEEAEG 799
KW+ EV+GALIKSFC EGLK +ALI+Q EMEKKG+ASN I+YNT+MDA+ KSNQ+EEAEG
Sbjct: 326 KWSSEVLGALIKSFCDEGLKSQALILQLEMEKKGVASNVIMYNTIMDAFSKSNQIEEAEG 385
Query: 800 LFTEMNAKGIVPTTATYNILMDAYGRRMQPEIIEKLLIEMRNLGLEPNVKSYTCLISAYG 979
+F EM +KG+ PT+A++NILM+AY RRMQPEI+EKLL+EM+++GLEPNVKSYTCLISAYG
Sbjct: 386 VFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYG 445
Query: 980 RQKDMSDMAANAFLRMKKAGIEPTSHSYTALINAYSISGWHEKAYITFENLLGEGLKPAI 1159
RQK MSDMAA+AFLRMKK GI PTSHSYTALI+AYS+SGWHEKAY FEN+L EGLKP+I
Sbjct: 446 RQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSAFENMLREGLKPSI 505
Query: 1160 ETYTALLDAFRRAGDSQTLXXXXXXXXXXXXEGTRVTFNILLDGFAKQGHYTEARDVICE 1339
ETYT LLDAFRRAGD+ +L GTRVTFN LLDGFAK GHY EARDVI E
Sbjct: 506 ETYTTLLDAFRRAGDTVSLMKIWKLMIREKVLGTRVTFNTLLDGFAKHGHYVEARDVISE 565
Query: 1340 FGKIGYKPTVLTYNMLMNAYARGGQDSKLPQLLNEMAGLNLKPDSVTYSTMIYAFVRVRD 1519
F KIG +PTV+TYNMLMNAYARGGQ KLPQLL EMA +LKPDSVTYSTMIYAFVRVRD
Sbjct: 566 FDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAARDLKPDSVTYSTMIYAFVRVRD 625
Query: 1520 FKRAFFYHKQMVKSGQLPD 1576
FKRAFFYHK+MVKSGQ+PD
Sbjct: 626 FKRAFFYHKKMVKSGQVPD 644
Score = 110 bits (275), Expect = 1e-21
Identities = 50/91 (54%), Positives = 74/91 (81%)
Frame = +3
Query: 27 QVLNLAKNLPQNKTLGEVLGDYEGKMGKTECVKLLELMSEEKGLVLSCLYFFEWMGLQKP 206
+++ +A+NL QN TLGE LG++EG++ + EC ++L L+ EE LV+ CLYFFEWMGLQ+
Sbjct: 160 EIVGIARNLSQNMTLGEALGEFEGRISEKECWEVLRLLGEEN-LVVCCLYFFEWMGLQET 218
Query: 207 SLISARACVIMFIVLGRAGMGDKLIVLFNNL 299
SL+++RA ++F +LGRAGMG+K++VLF NL
Sbjct: 219 SLVTSRAYSLLFPLLGRAGMGEKIMVLFKNL 249
>ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 711
Score = 567 bits (1460), Expect = e-159
Identities = 278/379 (73%), Positives = 321/379 (84%)
Frame = +2
Query: 440 SGLFSCGRYDDAWKVYETMERNNVEPDHVTCSIMITIMRKNGNSAKDAWEFFEKLNKKES 619
SGL S GR +DAWKVYE+ME +NV PDHVTCSIM+ +MRK G+SAKDAW+FFEK+N K
Sbjct: 276 SGLLSSGRCEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGV 335
Query: 620 KWTVEVIGALIKSFCVEGLKKEALIIQAEMEKKGIASNAIIYNTLMDAYGKSNQVEEAEG 799
KW EV+GALIKSFCVEGL EALII +E+EKKG++SNAI+YNTLMDAY KSN+VEEAEG
Sbjct: 336 KWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNAIVYNTLMDAYCKSNRVEEAEG 395
Query: 800 LFTEMNAKGIVPTTATYNILMDAYGRRMQPEIIEKLLIEMRNLGLEPNVKSYTCLISAYG 979
LF EM KGI T AT+NILM AY R+MQPEI+EKL+ EM++ GL+PN KSYTCLISAYG
Sbjct: 396 LFIEMKTKGIKHTEATFNILMYAYSRKMQPEIVEKLMAEMQDAGLKPNAKSYTCLISAYG 455
Query: 980 RQKDMSDMAANAFLRMKKAGIEPTSHSYTALINAYSISGWHEKAYITFENLLGEGLKPAI 1159
+QK+MSDMAA+AFL+MKK GI+PTSHSYTALI+AYS+SGWHEKAY FEN+ EG+KP+I
Sbjct: 456 KQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSI 515
Query: 1160 ETYTALLDAFRRAGDSQTLXXXXXXXXXXXXEGTRVTFNILLDGFAKQGHYTEARDVICE 1339
ETYTALLDAFRRAGD+QTL EGTRVTFN L+DGFAK GHY EARDVI +
Sbjct: 516 ETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGTRVTFNTLVDGFAKHGHYKEARDVISK 575
Query: 1340 FGKIGYKPTVLTYNMLMNAYARGGQDSKLPQLLNEMAGLNLKPDSVTYSTMIYAFVRVRD 1519
F +G PTV+TYNMLMNAYARGGQ SKLP+LL EMA NLKPDSVTYSTMIYAF+RVRD
Sbjct: 576 FANVGLHPTVMTYNMLMNAYARGGQHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRD 635
Query: 1520 FKRAFFYHKQMVKSGQLPD 1576
F +AFFYH++MVKSGQ+ D
Sbjct: 636 FSQAFFYHQEMVKSGQVID 654
Score = 104 bits (260), Expect = 6e-20
Identities = 46/96 (47%), Positives = 75/96 (78%)
Frame = +3
Query: 12 DSVMFQVLNLAKNLPQNKTLGEVLGDYEGKMGKTECVKLLELMSEEKGLVLSCLYFFEWM 191
+ ++ +++ LA+NL QN TL E L +YEG++ + +C ++L+L+ EE+ L++ CLYFF+WM
Sbjct: 165 EGIVGEIVQLARNLTQNLTLEEALAEYEGRVSEKDCWEVLKLLGEEQ-LLVCCLYFFQWM 223
Query: 192 GLQKPSLISARACVIMFIVLGRAGMGDKLIVLFNNL 299
Q+PSL++ RAC ++F +LG+A MGDKL++LF NL
Sbjct: 224 RSQEPSLVTPRACTVLFPLLGKARMGDKLMLLFTNL 259