BLASTX nr result
ID: Bupleurum21_contig00015106
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00015106
(2173 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containi... 514 e-143
ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|2... 473 e-130
ref|XP_002518527.1| pentatricopeptide repeat-containing protein,... 465 e-128
sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-c... 355 2e-95
ref|NP_193849.2| pentatricopeptide repeat-containing protein [Ar... 294 8e-77
>ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21170-like
[Vitis vinifera]
Length = 569
Score = 514 bits (1323), Expect = e-143
Identities = 251/490 (51%), Positives = 347/490 (70%), Gaps = 1/490 (0%)
Frame = +2
Query: 2 WSRKNLGFQPDLRVECKLVQTLIRFGLSQPARPILDSLVETHPLPQIVDALVVSCKGTDC 181
W R NLGFQPDL ++++ I+ GL QPA+ ILDSL+ET + +VD+++ +C+G D
Sbjct: 83 WVRTNLGFQPDLAAHSQIIRISIQSGLFQPAKGILDSLIETQKVSVLVDSVIQACRGKDS 142
Query: 182 HSVVFSSVVECYTKKGLYLQALQVFRKVRDFGCVVSDHSCNGLLNVLQESNEIRLSWCFY 361
S V V+ECY+ KGL+++AL+VFR++ G V S SCN LL+ LQ NEI+L+WC
Sbjct: 143 ESPVLGFVLECYSSKGLFIEALEVFRRITIHGYVPSVRSCNALLDSLQRENEIKLAWCVC 202
Query: 362 ASMLRNGVLASQYTWNVIARILSKDGKFEKIGQVIDMG-VHNSLIYNLIIEFYSTSGNFK 538
+++RNGVL IA IL K+GK E++ +++DM V N+LIY L+I+ Y GNF
Sbjct: 203 GALIRNGVLPDYVR---IALILCKNGKLERVVRLLDMSIVCNALIYKLVIDCYCERGNFS 259
Query: 539 GAVDRLNEMVDKKLEPGFVTYSSILDGACQHGNVEIIELMMESMEKNEHIPILPSLEYNS 718
A LNEM ++K +PGF Y+SILDGAC++ N E+I+++M SM + +P L EY+S
Sbjct: 260 AAFHYLNEMCNRKFDPGFCAYNSILDGACKYENDEVIQIVMGSMVEKGLLPKLLLSEYDS 319
Query: 719 IIQRLCEVGKTYAADMFFKRASAEKVELDEATYDCILRAFCNKGRAKDAIAIHEMMLESG 898
IIQ++C +GKT+AA MFFKRA EK+ELD ATY C+LRA GR K+AI ++ ++LESG
Sbjct: 320 IIQKICNLGKTHAAQMFFKRARNEKIELDNATYGCMLRALAKDGRVKEAIGVYLVILESG 379
Query: 899 TVAKDSCYKLFLNVLCNEYPSEKISKLLVDLIGRGFFPCLSELSKFIVSQCKNKKWREAE 1078
KD CY F+NVLC E PS+++SKL+ ++IG+GF PC S+LSKFI S CKN +W EA+
Sbjct: 380 VTVKDGCYHAFVNVLCEEDPSQEVSKLMGEIIGKGFSPCGSKLSKFITSLCKNGRWTEAD 439
Query: 1079 DLIDVLLEKGFVPDSFSASCLVKHFCSSRRIDSAVALHNKLEHMRGTLDTNAYNXXXXXX 1258
DL++V +EKG +PDSF S LV+H+C SR+IDS++ALH K++ ++G+LD YN
Sbjct: 440 DLLNVTIEKGLLPDSFCCSALVEHYCRSRQIDSSIALHEKIKKVKGSLDVATYNVLLNGL 499
Query: 1259 XXXXXXXXALKIFDYMRSHSLLNGESFSAMISGLCQENDLRKAMRLHDEMLKMGLKPDLK 1438
A+ +FD MRS +LL+ SF+ M+SGLC+E +LRKAM+ HDEMLKMGLKPD
Sbjct: 500 FMEKRIEDAVSVFDCMRSQNLLSSTSFTIMVSGLCRERELRKAMKFHDEMLKMGLKPDRA 559
Query: 1439 NYKRLIASFK 1468
YKRLI+ FK
Sbjct: 560 TYKRLISGFK 569
>ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|222848569|gb|EEE86116.1|
predicted protein [Populus trichocarpa]
Length = 564
Score = 473 bits (1216), Expect = e-130
Identities = 226/488 (46%), Positives = 335/488 (68%)
Frame = +2
Query: 2 WSRKNLGFQPDLRVECKLVQTLIRFGLSQPARPILDSLVETHPLPQIVDALVVSCKGTDC 181
W + NL +PDL+ +C ++ + GL+ P RPI+DSLV+TH + + +A+V SC+G
Sbjct: 75 WVQTNLKLKPDLKSQCHIINICVNSGLTLPVRPIMDSLVKTHHVSVLGEAMVDSCRGKSL 134
Query: 182 HSVVFSSVVECYTKKGLYLQALQVFRKVRDFGCVVSDHSCNGLLNVLQESNEIRLSWCFY 361
S FS V+ECY+ KGL++++L++FRK+R G + S +CN +L+VLQ NEI+L+WCFY
Sbjct: 135 KSDAFSFVLECYSHKGLFMESLEMFRKMRGNGFIASGTACNSVLDVLQRENEIKLAWCFY 194
Query: 362 ASMLRNGVLASQYTWNVIARILSKDGKFEKIGQVIDMGVHNSLIYNLIIEFYSTSGNFKG 541
+M+++GVL + TW++IA+IL KDG FE+I + +DMGV+NS++YN +I+ S G+F+
Sbjct: 195 CAMIKDGVLPDKLTWSLIAQILCKDGNFERIVKFLDMGVYNSVLYNGVIDCCSKRGDFEA 254
Query: 542 AVDRLNEMVDKKLEPGFVTYSSILDGACQHGNVEIIELMMESMEKNEHIPILPSLEYNSI 721
A +RLN+M ++KL+PGF TYS+ILDGAC+HGN E+IE +M+ M + +P P + +S+
Sbjct: 255 AFERLNQMCERKLDPGFSTYSAILDGACKHGNEEVIERVMDIMAEKGLLPKCPLSQCDSV 314
Query: 722 IQRLCEVGKTYAADMFFKRASAEKVELDEATYDCILRAFCNKGRAKDAIAIHEMMLESGT 901
IQ+ ++ K A MFF+RA EK+ L +ATY C+L+A + R K+AI ++ ++ E G
Sbjct: 315 IQKFSDLCKMNVATMFFRRACDEKIGLQDATYGCMLKALSKEARVKEAIGLYSLISEKGI 374
Query: 902 VAKDSCYKLFLNVLCNEYPSEKISKLLVDLIGRGFFPCLSELSKFIVSQCKNKKWREAED 1081
KDS Y FL++L E E+ ++L D++ RGF P LSKFI+ + ++WRE ED
Sbjct: 375 RVKDSTYHAFLDLLSEEDQYEEGYEILGDMMRRGFRPGTVGLSKFILLLSRKRRWREVED 434
Query: 1082 LIDVLLEKGFVPDSFSASCLVKHFCSSRRIDSAVALHNKLEHMRGTLDTNAYNXXXXXXX 1261
L+D++LEKG +PDS LV+H+CS R+ID AVALHNK+E ++ +LD YN
Sbjct: 435 LLDLVLEKGLLPDSLCCCSLVEHYCSRRQIDKAVALHNKMEKLQASLDVATYNILLDGLV 494
Query: 1262 XXXXXXXALKIFDYMRSHSLLNGESFSAMISGLCQENDLRKAMRLHDEMLKMGLKPDLKN 1441
+++FDYM+ L+N ESF+ I GLC+ ++RKAM+LHDEML MGLKPD
Sbjct: 495 KNGRIEEVVRVFDYMKGLKLVNSESFTITIRGLCRAKEMRKAMKLHDEMLDMGLKPDKAA 554
Query: 1442 YKRLIASF 1465
YKRLI F
Sbjct: 555 YKRLILEF 562
>ref|XP_002518527.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223542372|gb|EEF43914.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 599
Score = 465 bits (1197), Expect = e-128
Identities = 221/488 (45%), Positives = 336/488 (68%)
Frame = +2
Query: 2 WSRKNLGFQPDLRVECKLVQTLIRFGLSQPARPILDSLVETHPLPQIVDALVVSCKGTDC 181
W++ NL F PDL+ +C ++Q + L + A+ ILDSL++T+P ++ +V +C+G
Sbjct: 104 WAKTNLNFNPDLKSQCHVIQLSLGSDLPRAAKKILDSLIKTYPSNLFLETMVQACRGKSS 163
Query: 182 HSVVFSSVVECYTKKGLYLQALQVFRKVRDFGCVVSDHSCNGLLNVLQESNEIRLSWCFY 361
+ V+E Y+ KG +L+ L+V++K+R GC S H+CN LL+ LQ +EIRL+WCFY
Sbjct: 164 LLCTLNFVLEFYSHKGSFLEGLEVYKKMRVIGCTPSVHACNVLLDALQRESEIRLAWCFY 223
Query: 362 ASMLRNGVLASQYTWNVIARILSKDGKFEKIGQVIDMGVHNSLIYNLIIEFYSTSGNFKG 541
+M+R GVL ++TW+++A IL KDG FE+I +++DMG+ NS++YN ++++YS +G+FK
Sbjct: 224 CAMIRVGVLPDKFTWSLVAHILCKDGNFERIVKLLDMGICNSVMYNAVVDYYSKNGDFKA 283
Query: 542 AVDRLNEMVDKKLEPGFVTYSSILDGACQHGNVEIIELMMESMEKNEHIPILPSLEYNSI 721
A RLNEM D+K+EPGF TYSSILDGAC+ N+++IE ++ M + + PS +Y+SI
Sbjct: 284 AFCRLNEMYDRKVEPGFSTYSSILDGACKCRNLQVIERVVAIMVGKQLLSKCPSSDYDSI 343
Query: 722 IQRLCEVGKTYAADMFFKRASAEKVELDEATYDCILRAFCNKGRAKDAIAIHEMMLESGT 901
IQ+LC++GK AA +FFKRA E++ L +ATY +LRAF +G ++AI +++++LE G
Sbjct: 344 IQKLCDLGKVSAATLFFKRACDERIGLQDATYGRMLRAFSIEGILEEAIGLYQVILERGL 403
Query: 902 VAKDSCYKLFLNVLCNEYPSEKISKLLVDLIGRGFFPCLSELSKFIVSQCKNKKWREAED 1081
KD+ F+++L + + +++ D++ RGF PC S LSK+I CK ++W+EAE+
Sbjct: 404 TIKDNASDAFVDLLSEKDQYAEGYEIVRDIMRRGFSPCTSSLSKYITLLCKKRRWKEAEE 463
Query: 1082 LIDVLLEKGFVPDSFSASCLVKHFCSSRRIDSAVALHNKLEHMRGTLDTNAYNXXXXXXX 1261
L+ ++LEKG +PD+ S LVKH+CSS++ D A+ALHN LE ++ +LD AYN
Sbjct: 464 LLYMVLEKGLLPDTLSFCSLVKHYCSSKQTDKALALHNTLEKLQASLDITAYNLLLGGLV 523
Query: 1262 XXXXXXXALKIFDYMRSHSLLNGESFSAMISGLCQENDLRKAMRLHDEMLKMGLKPDLKN 1441
++K+FDYM+ L N SF+ +I GLC+ +LRKAM+LHDEML MGLKPD
Sbjct: 524 KEGRVEESIKVFDYMKGLKLANSASFTVIIRGLCRAKELRKAMKLHDEMLNMGLKPDKPT 583
Query: 1442 YKRLIASF 1465
YKRLI F
Sbjct: 584 YKRLILEF 591
>sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21170
Length = 585
Score = 355 bits (912), Expect = 2e-95
Identities = 184/494 (37%), Positives = 306/494 (61%), Gaps = 5/494 (1%)
Frame = +2
Query: 2 WSRKNLGFQPDLRVECKLVQTLIRFGLSQPARPILDSLVETHPLPQIVDALVVSCKGTDC 181
+++ +L F+PDL+ C++++ GL + A +L LVET+ + +V + +G
Sbjct: 92 FAKTHLRFEPDLKSHCRVIEVAAESGLLERAEMLLRPLVETNSVSLVVGEMHRWFEGEVS 151
Query: 182 HSVVFSSVVECYTKKGLYLQALQVFRKVRDFGCVVSDHSCNGLLNVLQESNEIRLSWCFY 361
SV S V+E Y KG + L+VF +R S + N LL L + N+ R++ C Y
Sbjct: 152 LSVSLSLVLEYYALKGSHHNGLEVFGFMRRLRLSPSQSAYNSLLGSLVKENQFRVALCLY 211
Query: 362 ASMLRNGVLASQYTWNVIARILSKDGKFEKIGQVIDMGVHNSLIYNLIIEFYSTSGNFKG 541
++M+RNG+++ + TW++IA+IL + G+ + + ++++ GV + IY ++E YS +G F
Sbjct: 212 SAMVRNGIVSDELTWDLIAQILCEQGRSKSVFKLMETGVESCKIYTNLVECYSRNGEFDA 271
Query: 542 AVDRLNEMVDKKLEPGFVTYSSILDGACQHGNVEIIELMMESMEKNEHIPILPSLEYNSI 721
++EM DKKLE F +Y +LD AC+ G+ E I+ ++ M + + + + S + I
Sbjct: 272 VFSLIHEMDDKKLELSFCSYGCVLDDACRLGDAEFIDKVLCLMVEKKFVTLGDSAVNDKI 331
Query: 722 IQRLCEVGKTYAADMFFKRA-SAEKVELDEATYDCILRAFCNKGRAKDAIAIHEMMLESG 898
I+RLC++GKT+A++M F++A + E V L ++TY C+L+A K R K+A+ ++ M+ G
Sbjct: 332 IERLCDMGKTFASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRTKEAVDVYRMICRKG 391
Query: 899 -TVAKDSCYKLFLNVLC-NEYPSEKISKLLVDLIGRGFFPCLSELSKFIVSQCKNKKWRE 1072
TV +SCY F N LC ++ SE+ +LLVD+I RGF PC +LS+ + S C+ ++W+
Sbjct: 392 ITVLDESCYIEFANALCRDDNSSEEEEELLVDVIKRGFVPCTHKLSEVLASMCRKRRWKS 451
Query: 1073 AEDLIDVLLEKGFVPDSFSASCLVKHFCSSRRIDSAVALHNKLEHMRGTLDTNAYN--XX 1246
AE L+D ++E DSF+ L++ +C S +++ A+ LH K++ M+G+LD NAYN
Sbjct: 452 AEKLLDSVMEMEVYFDSFACGLLMERYCRSGKLEKALVLHEKIKKMKGSLDVNAYNAVLD 511
Query: 1247 XXXXXXXXXXXXALKIFDYMRSHSLLNGESFSAMISGLCQENDLRKAMRLHDEMLKMGLK 1426
A+ +F+YM+ + +N +SF+ MI GLC+ +++KAMR HDEML++GLK
Sbjct: 512 RLMMRQKEMVEEAVVVFEYMKEINSVNSKSFTIMIQGLCRVKEMKKAMRSHDEMLRLGLK 571
Query: 1427 PDLKNYKRLIASFK 1468
PDL YKRLI FK
Sbjct: 572 PDLVTYKRLILGFK 585
>ref|NP_193849.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659015|gb|AEE84415.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 551
Score = 294 bits (752), Expect = 8e-77
Identities = 171/494 (34%), Positives = 281/494 (56%), Gaps = 5/494 (1%)
Frame = +2
Query: 2 WSRKNLGFQPDLRVECKLVQTLIRFGLSQPARPILDSLVETHPLPQIVDALVVSCKGTDC 181
+++ +L F+PDL+ C++++ GL + A +L LVET+ + +V + +G
Sbjct: 92 FAKTHLRFEPDLKSHCRVIEVAAESGLLERAEMLLRPLVETNSVSLVVGEMHRWFEGEVS 151
Query: 182 HSVVFSSVVECYTKKGLYLQALQVFRKVRDFGCVVSDHSCNGLLNVLQESNEIRLSWCFY 361
SV S V+E Y KG + L+VF +R S + N LL L + N+ R++ C Y
Sbjct: 152 LSVSLSLVLEYYALKGSHHNGLEVFGFMRRLRLSPSQSAYNSLLGSLVKENQFRVALCLY 211
Query: 362 ASMLRNGVLASQYTWNVIARILSKDGKFEKIGQVIDMGVHNSLIYNLIIEFYSTSGNFKG 541
++M+RNG+++ + TW++IA+IL + G+ + + ++++ GV + IY ++E YS +G F
Sbjct: 212 SAMVRNGIVSDELTWDLIAQILCEQGRSKSVFKLMETGVESCKIYTNLVECYSRNGEFDA 271
Query: 542 AVDRLNEMVDKKLEPGFVTYSSILDGACQHGNVEIIELMMESMEKNEHIPILPSLEYNSI 721
++EM DKKLE F +Y +LD AC+ G+ E I+ ++ M + + + + S + I
Sbjct: 272 VFSLIHEMDDKKLELSFCSYGCVLDDACRLGDAEFIDKVLCLMVEKKFVTLGDSAVNDKI 331
Query: 722 IQRLCEVGKTYAADMFFKRA-SAEKVELDEATYDCILRAFCNKGRAKDAIAIHEMMLESG 898
I+RLC++GKT+A++M F++A + E V L ++TY C+L+A K R K+A+ ++ M+ G
Sbjct: 332 IERLCDMGKTFASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRTKEAVDVYRMICRKG 391
Query: 899 -TVAKDSCYKLFLNVLC-NEYPSEKISKLLVDLIGRGFFPCLSELSKFIVSQCKNKKWRE 1072
TV +SCY F N LC ++ SE+ +LLVD+I RG + S I + KWR
Sbjct: 392 ITVLDESCYIEFANALCRDDNSSEEEEELLVDVIKRGKEDGNPQRSFLI----RLWKWR- 446
Query: 1073 AEDLIDVLLEKGFVPDSFSASCLVKHFCSSRRIDSAVALHNKLEHMRGTLDTNAYN--XX 1246
S +++ A+ LH K++ M+G+LD NAYN
Sbjct: 447 -----------------------------SGKLEKALVLHEKIKKMKGSLDVNAYNAVLD 477
Query: 1247 XXXXXXXXXXXXALKIFDYMRSHSLLNGESFSAMISGLCQENDLRKAMRLHDEMLKMGLK 1426
A+ +F+YM+ + +N +SF+ MI GLC+ +++KAMR HDEML++GLK
Sbjct: 478 RLMMRQKEMVEEAVVVFEYMKEINSVNSKSFTIMIQGLCRVKEMKKAMRSHDEMLRLGLK 537
Query: 1427 PDLKNYKRLIASFK 1468
PDL YKRLI FK
Sbjct: 538 PDLVTYKRLILGFK 551