BLASTX nr result

ID: Bupleurum21_contig00015083 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00015083
         (1131 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298913.1| predicted protein [Populus trichocarpa] gi|2...   294   2e-77
ref|XP_002316790.1| predicted protein [Populus trichocarpa] gi|2...   292   1e-76
ref|XP_002277842.1| PREDICTED: polyadenylate-binding protein, cy...   292   1e-76
gb|AFK42884.1| unknown [Lotus japonicus]                              287   3e-75
gb|ABK22180.1| unknown [Picea sitchensis]                             287   3e-75

>ref|XP_002298913.1| predicted protein [Populus trichocarpa] gi|222846171|gb|EEE83718.1|
            predicted protein [Populus trichocarpa]
          Length = 307

 Score =  294 bits (753), Expect = 2e-77
 Identities = 166/305 (54%), Positives = 202/305 (66%), Gaps = 11/305 (3%)
 Frame = -3

Query: 1108 VAITGEVTVETAAGNVASSSPTTQSGQDCVNVVSVTXXXXXXXXXXXXXXXEITDWLSKL 929
            +A   E+T E A   VAS++ TT + ++  N  +                 ++ D  +KL
Sbjct: 1    MAAVAEITSEAA---VASNNTTTAANKNDNN--NNLDSETKPTSESEFTVQKLVDMFTKL 55

Query: 928  NPLAKEFVPSANATDQNQD-----------QSAVXXXXXXXXXXXXXXXXRMTARAVRAQ 782
            NPLAKEF PS+ + +   +           QSA                 ++  RA RAQ
Sbjct: 56   NPLAKEFFPSSYSKNNPNELHFNNFAVPVKQSANDNFPKRKRNNFNQGRRKLNGRAYRAQ 115

Query: 781  REDCIRRTVYVSDIDHLVSEELLAYVFSCCGLVSDCRICGDPRSPLRFAFVEFKEEYAAR 602
            +ED IRRTVYVSDID  V+EE LA +FS CG V DCR+CGDP S LRFAFVEF +E  AR
Sbjct: 116  QEDSIRRTVYVSDIDQHVTEERLAGLFSGCGQVVDCRVCGDPHSVLRFAFVEFADEQGAR 175

Query: 601  AALNLTGALLGVFPIKVLPSKTAILPVNPRYLPRSEDDIEKASRTVYCTNIDKKVTTEDV 422
            AALNL G +LG +P++VLPSKTAILPVNP +LPRSED+ E  +RTVYCTNIDKKV+  +V
Sbjct: 176  AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTVYCTNIDKKVSQVEV 235

Query: 421  KTFFESRCGQVSRLRLLGDQVHSTRIAFVEFVVAESAILSLTCCGQLLGSHPVRVSPSKT 242
            K FFES CG+V+RLRLLGDQVHSTRIAFVEF +AESAI++L C G  LGS PVRVSPSKT
Sbjct: 236  KNFFESICGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVALNCSGMALGSQPVRVSPSKT 295

Query: 241  PVRVR 227
            PVR R
Sbjct: 296  PVRPR 300


>ref|XP_002316790.1| predicted protein [Populus trichocarpa] gi|222859855|gb|EEE97402.1|
            predicted protein [Populus trichocarpa]
          Length = 308

 Score =  292 bits (747), Expect = 1e-76
 Identities = 167/305 (54%), Positives = 199/305 (65%), Gaps = 11/305 (3%)
 Frame = -3

Query: 1108 VAITGEVTVETAAGNVASSSPTTQSGQDCVNVVSVTXXXXXXXXXXXXXXXEITDWLSKL 929
            +A   E+  E A    ++S+ TT    +  N+ S                 ++ D  +KL
Sbjct: 1    MAAVVEIASEVAVAAKSNSNTTTNKNDNNNNLDS----ERNPKSESEFTVQKLVDMFTKL 56

Query: 928  NPLAKEFVPSA-NATDQNQ----------DQSAVXXXXXXXXXXXXXXXXRMTARAVRAQ 782
            NPLAKEF PS+ N  +  Q           QSA                 R+  RA RAQ
Sbjct: 57   NPLAKEFFPSSYNKNNPKQFHINNFPVPNKQSANDNFPKRRRNDFNQGRRRLNGRAYRAQ 116

Query: 781  REDCIRRTVYVSDIDHLVSEELLAYVFSCCGLVSDCRICGDPRSPLRFAFVEFKEEYAAR 602
            RED IRRTVYVSDID  V+EE LA +FS CG V DCRICGDPRS LRFAFVEF  E  AR
Sbjct: 117  REDSIRRTVYVSDIDQHVTEEQLAGLFSGCGQVVDCRICGDPRSVLRFAFVEFAVEQGAR 176

Query: 601  AALNLTGALLGVFPIKVLPSKTAILPVNPRYLPRSEDDIEKASRTVYCTNIDKKVTTEDV 422
            AALNL G +LG +P++VLPSKTAILPVNP +LP+SED+ E  +RTVYCTNI+KKV+  +V
Sbjct: 177  AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPQSEDEREMCTRTVYCTNIEKKVSQAEV 236

Query: 421  KTFFESRCGQVSRLRLLGDQVHSTRIAFVEFVVAESAILSLTCCGQLLGSHPVRVSPSKT 242
            K FFES CG+V+RLRLLGD VHSTRIAFVEF +AESAI++L C G +LGS PVRVSPSKT
Sbjct: 237  KNFFESICGEVTRLRLLGDHVHSTRIAFVEFAMAESAIVALNCSGMVLGSQPVRVSPSKT 296

Query: 241  PVRVR 227
            PVR R
Sbjct: 297  PVRPR 301


>ref|XP_002277842.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and nuclear
           [Vitis vinifera] gi|296088694|emb|CBI38144.3| unnamed
           protein product [Vitis vinifera]
          Length = 292

 Score =  292 bits (747), Expect = 1e-76
 Identities = 157/251 (62%), Positives = 185/251 (73%), Gaps = 9/251 (3%)
 Frame = -3

Query: 952 ITDWLS--KLNPLAKEFVPSANA------TDQNQDQ-SAVXXXXXXXXXXXXXXXXRMTA 800
           I D LS  KLNPLAKEF PS+ +      TD ++D  +                  R++ 
Sbjct: 35  IVDMLSNLKLNPLAKEFFPSSYSHDHLIPTDFSKDSPNDAYPNNRRRRNNYNQGRRRLSG 94

Query: 799 RAVRAQREDCIRRTVYVSDIDHLVSEELLAYVFSCCGLVSDCRICGDPRSPLRFAFVEFK 620
           RA RAQRED IRRTVYVSDID  V+EE LA +FS CG V DCR+CGDP S LRFAFVEF 
Sbjct: 95  RAFRAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVVDCRVCGDPHSVLRFAFVEFA 154

Query: 619 EEYAARAALNLTGALLGVFPIKVLPSKTAILPVNPRYLPRSEDDIEKASRTVYCTNIDKK 440
           +E+ ARAALNL G +LG +P++VLPSKTAILPVNP +LPRSED+ E  +RTVYCTNIDKK
Sbjct: 155 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNIDKK 214

Query: 439 VTTEDVKTFFESRCGQVSRLRLLGDQVHSTRIAFVEFVVAESAILSLTCCGQLLGSHPVR 260
           V+  +VK FFE  CG+VSRLRLLGD VHSTRIAFVEF +AESAI++L C G +LG+ P+R
Sbjct: 215 VSQAEVKNFFERACGEVSRLRLLGDHVHSTRIAFVEFAMAESAIVALNCSGLVLGTQPIR 274

Query: 259 VSPSKTPVRVR 227
           VSPSKTPVR R
Sbjct: 275 VSPSKTPVRPR 285



 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
 Frame = -3

Query: 784 QREDCIRRTVYVSDIDHLVSE-ELLAYVFSCCGLVSDCRICGDPRSPLRFAFVEFKEEYA 608
           +RE C R TVY ++ID  VS+ E+  +    CG VS  R+ GD     R AFVEF    +
Sbjct: 198 EREMCAR-TVYCTNIDKKVSQAEVKNFFERACGEVSRLRLLGDHVHSTRIAFVEFAMAES 256

Query: 607 ARAALNLTGALLGVFPIKVLPSKTAILPVNPR 512
           A  ALN +G +LG  PI+V PSKT + P  PR
Sbjct: 257 AIVALNCSGLVLGTQPIRVSPSKTPVRPRVPR 288


>gb|AFK42884.1| unknown [Lotus japonicus]
          Length = 313

 Score =  287 bits (735), Expect = 3e-75
 Identities = 151/268 (56%), Positives = 183/268 (68%), Gaps = 26/268 (9%)
 Frame = -3

Query: 952 ITDWLSKLNPLAKEFVPSANATDQNQDQ--------------------------SAVXXX 851
           + D  +KLNPLA+EF+PS+ A   ++D                                 
Sbjct: 38  LVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVNNNNNKPLADDQYPNAN 97

Query: 850 XXXXXXXXXXXXXRMTARAVRAQREDCIRRTVYVSDIDHLVSEELLAYVFSCCGLVSDCR 671
                        R T R ++AQRED +RRTVYVSDID  V+EE LA +F+ CG V DCR
Sbjct: 98  NRRRRNNFNQGGRRFTGRVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCR 157

Query: 670 ICGDPRSPLRFAFVEFKEEYAARAALNLTGALLGVFPIKVLPSKTAILPVNPRYLPRSED 491
           ICGDP S LRFAFVEF +EY ARAALNL+G +LG +P++VLPSKTAILPVNP +LPRS+D
Sbjct: 158 ICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDD 217

Query: 490 DIEKASRTVYCTNIDKKVTTEDVKTFFESRCGQVSRLRLLGDQVHSTRIAFVEFVVAESA 311
           + E  SRTVYCTNIDKKV+  +VK FFE  CG+V+R+RLLGD VHSTRIAFVEF +AESA
Sbjct: 218 EREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESA 277

Query: 310 ILSLTCCGQLLGSHPVRVSPSKTPVRVR 227
           I++L+C G LLG+ PVRVSPSKTPVR R
Sbjct: 278 IIALSCSGMLLGTQPVRVSPSKTPVRPR 305



 Score = 62.8 bits (151), Expect = 2e-07
 Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
 Frame = -3

Query: 784 QREDCIRRTVYVSDIDHLVSEELLAYVFSC-CGLVSDCRICGDPRSPLRFAFVEFKEEYA 608
           +RE C  RTVY ++ID  VS+  +   F   CG V+  R+ GD     R AFVEF    +
Sbjct: 218 EREMC-SRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAES 276

Query: 607 ARAALNLTGALLGVFPIKVLPSKTAILPVNPR 512
           A  AL+ +G LLG  P++V PSKT + P  PR
Sbjct: 277 AIIALSCSGMLLGTQPVRVSPSKTPVRPRVPR 308


>gb|ABK22180.1| unknown [Picea sitchensis]
          Length = 288

 Score =  287 bits (735), Expect = 3e-75
 Identities = 147/244 (60%), Positives = 179/244 (73%), Gaps = 2/244 (0%)
 Frame = -3

Query: 952 ITDWLSKLNPLAKEFVPSANATDQN--QDQSAVXXXXXXXXXXXXXXXXRMTARAVRAQR 779
           + D LSKLNPLA+EF+P  + +         +                 R+  R +RAQ+
Sbjct: 38  LVDLLSKLNPLAEEFIPQPHRSPSFIINGNGSFANNSRRKKNNFNQGKRRLNGRNIRAQQ 97

Query: 778 EDCIRRTVYVSDIDHLVSEELLAYVFSCCGLVSDCRICGDPRSPLRFAFVEFKEEYAARA 599
           ED +RRTVYV DIDH V+EE LA +F  CG V DCRICGDP S LRFAF+EF +E  ARA
Sbjct: 98  EDSVRRTVYVCDIDHQVTEEQLAALFINCGQVIDCRICGDPNSVLRFAFIEFADEQGARA 157

Query: 598 ALNLTGALLGVFPIKVLPSKTAILPVNPRYLPRSEDDIEKASRTVYCTNIDKKVTTEDVK 419
           AL+L G +LG +P++VLPSKTAILPVNP +LPRSED+ E  +RT+YCTNIDKKV+  +V+
Sbjct: 158 ALSLAGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVR 217

Query: 418 TFFESRCGQVSRLRLLGDQVHSTRIAFVEFVVAESAILSLTCCGQLLGSHPVRVSPSKTP 239
            FFES CG+VSRLRLLGD VHSTRIAFVEFV+AESAIL+L C G ++GS P+RVSPSKTP
Sbjct: 218 MFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTP 277

Query: 238 VRVR 227
           VR R
Sbjct: 278 VRPR 281


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