BLASTX nr result
ID: Bupleurum21_contig00014942
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00014942
(1793 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]... 229 7e-95
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain... 228 9e-95
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 223 4e-93
ref|XP_002300438.1| predicted protein [Populus trichocarpa] gi|2... 218 7e-89
ref|XP_002307275.1| predicted protein [Populus trichocarpa] gi|2... 194 1e-72
>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
polyprotein; Contains: RecName: Full=Movement protein;
Short=MP; Contains: RecName: Full=Capsid protein;
Short=CP; Contains: RecName: Full=Aspartic protease;
Short=PR; Contains: RecName: Full=Reverse transcriptase;
Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
[petunia vein clearing virus]
Length = 2179
Score = 229 bits (583), Expect(2) = 7e-95
Identities = 128/300 (42%), Positives = 174/300 (58%), Gaps = 15/300 (5%)
Frame = +1
Query: 361 NYMAEFIHDLVKYRSPLSNQLKKDAPPWSQACTDAVKKLKSLTKNLPALKIPSNGKRVLQ 540
NY+ +FI ++ ++ SPLS+ LKK P W + +AVK+LK L + + +L IPS GK++LQ
Sbjct: 1627 NYIRDFIPEVTEHISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQQVKSLHIPSEGKKILQ 1686
Query: 541 TDASDKFWGAVLLEE*NGKRHLCGYKSGAFKSGELHYHSTYKEILAVKRGIEKFQFHLIG 720
TDASD++W AVLLEE NGKR +CG+ SG FK E HYHST+KEILAVK GI+KF F LI
Sbjct: 1687 TDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFLIH 1746
Query: 721 QHFLIEMDMSAFPKMLQFKQKMLPQSQLLRWANWFSQWKFEAKHIKGKNNFPPDFLPRTQ 900
+FL+EMDM AFPKM++ K++P SQLLRWA WFS ++FE KH+KGK+N DFL R
Sbjct: 1747 TNFLVEMDMRAFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSRPH 1806
Query: 901 RTISAILPMVYSLQIDDFTPHVKDMILPFLLQSRALSCLIS----------FQKIYIREF 1050
+ L T QS S +S F Y +
Sbjct: 1807 EFSQRLKNSPKVLMFQRRTRSSSTKSKADSSQSTGSSYKLSHNLPENPPEVFNLDYPWDT 1866
Query: 1051 GL-----TDGPLQGYPRNPNAPLQGYPINPKYPFLTIYFLNPNFLYHFPREAYRLLWYLL 1215
+ T LQ + + + L+ + ++P+YPF I+ NP F + + WYLL
Sbjct: 1867 SVFLERRTFYELQVFKKYGGSILRPFGVDPEYPFAHIFIPNPT---DFSEDLLWMFWYLL 1923
Score = 147 bits (370), Expect(2) = 7e-95
Identities = 71/119 (59%), Positives = 91/119 (76%)
Frame = +2
Query: 5 WTVVPFGLKPAPSLFQKAMSRIFQPIMENALVYIDDILLFSPDIDTHHDLLSKFHSLVQK 184
W V+PFGLK APSLFQKAM +IFQPI+ +ALVYIDDILLFS ++ H LL++F SLV+K
Sbjct: 1508 WKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKK 1567
Query: 185 YGIMLAEKKMIIGETNIDFLGMHISDGQYQLQPHIATQLDHFPDENLTFKQVQQFFGIV 361
+G+ML+ KKMI+ + I FLGM +DG + HI+ +L FPD NL+ KQ+QQF GIV
Sbjct: 1568 FGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIV 1626
>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
protein; Short=MP; Contains: RecName: Full=Capsid
protein; Short=CP; Contains: RecName: Full=Aspartic
protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 228 bits (582), Expect(2) = 9e-95
Identities = 128/300 (42%), Positives = 182/300 (60%), Gaps = 15/300 (5%)
Frame = +1
Query: 361 NYMAEFIHDLVKYRSPLSNQLKKDAPPWSQACTDAVKKLKSLTKNLPALKIPSNGKRVLQ 540
NY+ +FI ++ ++ SPLS+ LKK P W + +AVK+LK L + + +L IPS GK++LQ
Sbjct: 1628 NYIRDFIPEVTEHISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQQVKSLHIPSEGKKILQ 1687
Query: 541 TDASDKFWGAVLLEE*NGKRHLCGYKSGAFKSGELHYHSTYKEILAVKRGIEKFQFHLIG 720
TDASD++W AVLLEE NGKR +CG+ SG FK E HYHST+KEILAVK GI+KF F LI
Sbjct: 1688 TDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFLIH 1747
Query: 721 QHFLIEMDMSAFPKMLQFKQKMLPQSQLLRWANWFSQWKFEAKHIKGKNNFPPDFLPR-- 894
+FL+EMDM AFPKM++ K++P SQLLRWA WFS ++FE KH+KGK+N DFL R
Sbjct: 1748 TNFLVEMDMRAFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSRPH 1807
Query: 895 --TQRTISAILPMVYSLQIDDFTPHVKDMILPFLLQSRALSCLI------SFQKIYIREF 1050
+QR ++ +++ + + K S LS + +F Y +
Sbjct: 1808 EFSQRLKNSPKVLMFQRRTRSNSTKSKADSSQSTGSSYKLSHNLPENPPEAFDLDYPWDT 1867
Query: 1051 GL-----TDGPLQGYPRNPNAPLQGYPINPKYPFLTIYFLNPNFLYHFPREAYRLLWYLL 1215
+ T LQ + + + L+ + ++P+YPF I+ NP F + + WYLL
Sbjct: 1868 SVFLERRTFYELQVFKKYGGSILRPFGVDPEYPFAHIFIPNPT---DFSEDLLWMFWYLL 1924
Score = 147 bits (370), Expect(2) = 9e-95
Identities = 71/119 (59%), Positives = 91/119 (76%)
Frame = +2
Query: 5 WTVVPFGLKPAPSLFQKAMSRIFQPIMENALVYIDDILLFSPDIDTHHDLLSKFHSLVQK 184
W V+PFGLK APSLFQKAM +IFQPI+ +ALVYIDDILLFS ++ H LL++F SLV+K
Sbjct: 1509 WKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKK 1568
Query: 185 YGIMLAEKKMIIGETNIDFLGMHISDGQYQLQPHIATQLDHFPDENLTFKQVQQFFGIV 361
+G+ML+ KKMI+ + I FLGM +DG + HI+ +L FPD NL+ KQ+QQF GIV
Sbjct: 1569 FGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIV 1627
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 223 bits (568), Expect(2) = 4e-93
Identities = 104/178 (58%), Positives = 135/178 (75%)
Frame = +1
Query: 361 NYMAEFIHDLVKYRSPLSNQLKKDAPPWSQACTDAVKKLKSLTKNLPALKIPSNGKRVLQ 540
NY+ +FI ++ ++ SPLS+ LKK P W + +AVK+LK L + + +L IPS GK++LQ
Sbjct: 1628 NYIRDFIPEVTEHISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQQVKSLHIPSEGKKILQ 1687
Query: 541 TDASDKFWGAVLLEE*NGKRHLCGYKSGAFKSGELHYHSTYKEILAVKRGIEKFQFHLIG 720
TDASD++W AVLLEE NGKR +CG+ SG FK E HYHST+KEILAVK GI+KF F LI
Sbjct: 1688 TDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFLIH 1747
Query: 721 QHFLIEMDMSAFPKMLQFKQKMLPQSQLLRWANWFSQWKFEAKHIKGKNNFPPDFLPR 894
+FL+EMDM AFPKM++ K++P SQLLRWA WFS ++FE KH+KGK+N DFL R
Sbjct: 1748 TNFLVEMDMRAFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSR 1805
Score = 147 bits (370), Expect(2) = 4e-93
Identities = 71/119 (59%), Positives = 91/119 (76%)
Frame = +2
Query: 5 WTVVPFGLKPAPSLFQKAMSRIFQPIMENALVYIDDILLFSPDIDTHHDLLSKFHSLVQK 184
W V+PFGLK APSLFQKAM +IFQPI+ +ALVYIDDILLFS ++ H LL++F SLV+K
Sbjct: 1509 WKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKK 1568
Query: 185 YGIMLAEKKMIIGETNIDFLGMHISDGQYQLQPHIATQLDHFPDENLTFKQVQQFFGIV 361
+G+ML+ KKMI+ + I FLGM +DG + HI+ +L FPD NL+ KQ+QQF GIV
Sbjct: 1569 FGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIV 1627
>ref|XP_002300438.1| predicted protein [Populus trichocarpa] gi|222847696|gb|EEE85243.1|
predicted protein [Populus trichocarpa]
Length = 615
Score = 218 bits (555), Expect(2) = 7e-89
Identities = 123/285 (43%), Positives = 161/285 (56%), Gaps = 3/285 (1%)
Frame = +1
Query: 364 YMAEFIHDLVKYRSPLSNQLKKDAPPWSQACTDAVKKLKSLTKNLPALKIPSNGKRVLQT 543
Y+ FI + + PL LKKDA W++ T A R+LQT
Sbjct: 241 YLRNFIPRVAQMTRPLQLILKKDADSWTEKQTQA---------------------RILQT 279
Query: 544 DASDKFWGAVLLEE*NGKRHLCGYKSGAFKSGELHYHSTYKEILAVKRGIEKFQFHLIGQ 723
D SDK+W VLLE+ NG RH+CGYKSG+FK E HYHST+KEILAVK GI+KF+FHL+
Sbjct: 280 DVSDKYWSDVLLEDKNGHRHICGYKSGSFKESETHYHSTFKEILAVKYGIQKFEFHLVAY 339
Query: 724 HFLIEMDMSAFPKMLQFKQKMLPQSQLLRWANWFSQWKFEAKHIKGKNNFPPDFLPRTQR 903
HF + MD S+FPKMLQFK+KM P QLLR A WF ++ F +HIKG N PD L R +
Sbjct: 340 HFTVIMDCSSFPKMLQFKRKMPPHPQLLRLAEWFPKYTFTVEHIKGTKNLIPDMLTRPPK 399
Query: 904 TISAILPMVYSLQIDDFTPHVKDM---ILPFLLQSRALSCLISFQKIYIREFGLTDGPLQ 1074
T + +LP++ + P +D LP L Q L+ + Q + F L D L
Sbjct: 400 TQTLLLPLILIASFSNLAPPDQDFPTDDLPPLAQETVLNHTLDLQ-AKDKLFSLQDYLLL 458
Query: 1075 GYPRNPNAPLQGYPINPKYPFLTIYFLNPNFLYHFPREAYRLLWY 1209
Y + + Q I+PKYPF+ ++ P+ L FP+E Y LWY
Sbjct: 459 NYNMS-SFCFQSLGIHPKYPFIHLFTFKPSGL--FPKELYFFLWY 500
Score = 137 bits (346), Expect(2) = 7e-89
Identities = 67/119 (56%), Positives = 86/119 (72%)
Frame = +2
Query: 5 WTVVPFGLKPAPSLFQKAMSRIFQPIMENALVYIDDILLFSPDIDTHHDLLSKFHSLVQK 184
W V+PFGLK APSLFQKAM ++F+P+ + AL+YIDD+LLFS D D+H LL +F +V
Sbjct: 121 WRVMPFGLKVAPSLFQKAMIKVFEPMFQLALIYIDDVLLFSKDEDSHVTLLKQFAEIVHH 180
Query: 185 YGIMLAEKKMIIGETNIDFLGMHISDGQYQLQPHIATQLDHFPDENLTFKQVQQFFGIV 361
+GIML+E KM+I + I+FLGM +DG Y HIA +L F D LT KQ+QQF GIV
Sbjct: 181 HGIMLSESKMLICQKEIEFLGMVFADGAYTPSTHIAEELQKFSDSPLTRKQIQQFLGIV 239
>ref|XP_002307275.1| predicted protein [Populus trichocarpa] gi|222856724|gb|EEE94271.1|
predicted protein [Populus trichocarpa]
Length = 627
Score = 194 bits (492), Expect(2) = 1e-72
Identities = 117/281 (41%), Positives = 153/281 (54%), Gaps = 3/281 (1%)
Frame = +1
Query: 376 FIHDLVKYRSPLSNQLKKDAPPWSQACTDAVKKLKSLTKNLPALKIPSNGKRVLQTDASD 555
FI + + PL LKKDA W++ T AV+KLK+ T+NLPAL IPS G+R+LQTDASD
Sbjct: 148 FIPQVAQMTRPLQLMLKKDADSWTEKQTRAVRKLKTTTQNLPALFIPSTGQRILQTDASD 207
Query: 556 KFWGAVLLEE*NGKRHLCGYKSGAFKSGELHYHSTYKEILAVKRGIEKFQFHLIGQHFLI 735
K+W AVLLE+ NG RH+CGYK TY HF +
Sbjct: 208 KYWSAVLLEDKNGHRHICGYK-------------TY--------------------HFTV 234
Query: 736 EMDMSAFPKMLQFKQKMLPQSQLLRWANWFSQWKFEAKHIKGKNNFPPDFLPRTQRTISA 915
MD S+FPKMLQFK+KMLP QLLR A W S++ F +HIKG N PD L R +T +
Sbjct: 235 IMDCSSFPKMLQFKRKMLPHPQLLRLAKWLSKYTFTVEHIKGTKNLIPDMLTRPPKTQTL 294
Query: 916 ILPMVYSLQIDDFTPHVKDM---ILPFLLQSRALSCLISFQKIYIREFGLTDGPLQGYPR 1086
+LP++ + P +D LP L Q L+ + Q + F L D L Y
Sbjct: 295 LLPLILMASSSNLPPPSQDFPTDDLPPLAQEMVLNHTLDLQ-AKDKLFSLQDHLLLNYDM 353
Query: 1087 NPNAPLQGYPINPKYPFLTIYFLNPNFLYHFPREAYRLLWY 1209
+ + Q I+PKYPF+ ++ P+ L FP+E Y LWY
Sbjct: 354 S-SLCFQSLGIHPKYPFIHLFTFKPSGL--FPKELYFFLWY 391
Score = 108 bits (269), Expect(2) = 1e-72
Identities = 51/99 (51%), Positives = 72/99 (72%)
Frame = +2
Query: 5 WTVVPFGLKPAPSLFQKAMSRIFQPIMENALVYIDDILLFSPDIDTHHDLLSKFHSLVQK 184
W V+ FGLK AP LFQKAM ++F+P++++AL+YIDD+LLFS D D++ L +F +V
Sbjct: 46 WRVMSFGLKVAPFLFQKAMIKVFEPMLQSALIYIDDVLLFSKDEDSYATFLKQFVEIVHH 105
Query: 185 YGIMLAEKKMIIGETNIDFLGMHISDGQYQLQPHIATQL 301
+GIML+E KM+I + I+FLGM +DG Y HIA +L
Sbjct: 106 HGIMLSESKMLICQREIEFLGMVFTDGAYTPGTHIAEEL 144