BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00014439
         (1501 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   668   0.0  
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   657   0.0  
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              650   0.0  
ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   642   0.0  
ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arab...   625   e-177

>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 468

 Score =  668 bits (1724), Expect = 0.0
 Identities = 335/440 (76%), Positives = 373/440 (84%), Gaps = 4/440 (0%)
 Frame = -1

Query: 1312 STNIAHLGPPKDGPKPRQLLSLPPYQ---TPISNS-SSRVTAISWMKYYFQEIEASVIQS 1145
            S N+AHLG PKDGPKPRQLLSLPP+     P  NS +S VTAISW+KYYF EI  S IQS
Sbjct: 35   SNNVAHLGSPKDGPKPRQLLSLPPFPGLPLPGRNSMASHVTAISWVKYYFDEILDSAIQS 94

Query: 1144 HFNKGLVHIDDDSGSDELCTKKQGEMNHLRKIKHNEAMKLGARIYVPVSVAETRISKRFN 965
            HFNKGL HI+  +GS  +   + G    LRKIKHN+ M+ GAR++V VSVAETRISKRF+
Sbjct: 95   HFNKGLAHIECPNGSGSI---EYGGQMSLRKIKHNDIMEAGARVHVAVSVAETRISKRFD 151

Query: 964  SIPTGTLYPNADEIEYLQRLVKYKDSAIIVLNKPPRLPVKGNLPVHNSLDXXXXXXLSYG 785
            +IP+GTLYPNADEI+YLQRLVKYKDSAIIVLNKPPRLPVKGNLP+HNS+D      LSY 
Sbjct: 152  TIPSGTLYPNADEIQYLQRLVKYKDSAIIVLNKPPRLPVKGNLPLHNSMDALAAAALSYD 211

Query: 784  YDEGPKLVHRLDRESSGIHLMGRTKESITHLQWLFSGINKQNSSHKAWNDACQATYQKYW 605
            YDEGPKLV RLDRESSG+ LMGRTKESI HLQWLFS +NK NS  KAWNDAC+ATYQ+YW
Sbjct: 212  YDEGPKLVQRLDRESSGLLLMGRTKESIDHLQWLFSDVNKSNSRCKAWNDACKATYQRYW 271

Query: 604  ALVIGSPKEKEGLICAPLTKVLLNDGKTERVILAHGSGVEASQEAVTEYRVLGPMINGCS 425
            ALVIGSPKEKEGLI APL+KVLLNDGKTERV+LA  SG+EASQEA+TEYRVLGP INGCS
Sbjct: 272  ALVIGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQHSGLEASQEALTEYRVLGPRINGCS 331

Query: 424  WIELRPLTSRKHQIRVHCAEALGTPIVGDYKYGWFTHRKWKQMPRVDYEPTTGKPYKMRR 245
            WIELRPLTSRKHQ+RVHCAEALGTPIVGDYKYGW  H++WKQMPRVD EP +GKPYK+RR
Sbjct: 332  WIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWCVHQRWKQMPRVDIEPFSGKPYKLRR 391

Query: 244  PDGLDVQKGSVLSKVPLLHMHCRELVLPNIAKFIELHKNTLETQQNKPPEILSKPDLLRF 65
            P GLDVQKGSVLSKVPLLH+HCRE VLPNIAKF+ +     E  +N  P + +KPDLLRF
Sbjct: 392  PAGLDVQKGSVLSKVPLLHLHCREFVLPNIAKFLAVLN---EKSENIHPALDAKPDLLRF 448

Query: 64   VASMPSHMKISWNLMSSYLV 5
            VASMP+HMKISWNLMSSYLV
Sbjct: 449  VASMPTHMKISWNLMSSYLV 468


>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
            vinifera]
          Length = 479

 Score =  657 bits (1696), Expect = 0.0
 Identities = 322/445 (72%), Positives = 374/445 (84%), Gaps = 9/445 (2%)
 Frame = -1

Query: 1312 STNIAHLGPPKDGPKPRQLLSLPPYQTP---------ISNSSSRVTAISWMKYYFQEIEA 1160
            S N+A LG PK+GPKPRQLLSLPP+            +S   + VTAISW+KYYF EI  
Sbjct: 37   SNNVAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSLVNVSGLPTHVTAISWIKYYFDEIPG 96

Query: 1159 SVIQSHFNKGLVHIDDDSGSDELCTKKQGEMNHLRKIKHNEAMKLGARIYVPVSVAETRI 980
            SV+QSHFNKGLVH++  S  D+   +K+G++  LRKIK NE M+ G RIYVPVSVAE RI
Sbjct: 97   SVVQSHFNKGLVHMER-SNLDDSSLEKEGQIKPLRKIKPNEVMEAGTRIYVPVSVAEARI 155

Query: 979  SKRFNSIPTGTLYPNADEIEYLQRLVKYKDSAIIVLNKPPRLPVKGNLPVHNSLDXXXXX 800
            SKRF++IP+GTL+PNADEIEYLQRLV YKD AI+VLNKPP++P+KGNLPVHNS+D     
Sbjct: 156  SKRFDTIPSGTLHPNADEIEYLQRLVTYKDPAILVLNKPPKVPLKGNLPVHNSMDALAAA 215

Query: 799  XLSYGYDEGPKLVHRLDRESSGIHLMGRTKESITHLQWLFSGINKQNSSHKAWNDACQAT 620
             L++ Y+EGPKLVHRLDRESSG+ LMGRTKES+ HL WLFS INK  S  KAW+DAC+AT
Sbjct: 216  ALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFSDINKAKSLSKAWDDACEAT 275

Query: 619  YQKYWALVIGSPKEKEGLICAPLTKVLLNDGKTERVILAHGSGVEASQEAVTEYRVLGPM 440
             Q+YWALVIGSPK+KEG+I APL+KVLL+DGKTERVILA+ SG+EASQEA+TEYRVLGPM
Sbjct: 276  CQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAITEYRVLGPM 335

Query: 439  INGCSWIELRPLTSRKHQIRVHCAEALGTPIVGDYKYGWFTHRKWKQMPRVDYEPTTGKP 260
            INGCSWIEL P TSRKHQ+RVHCAEALGTPIVGDYKYGWF HR+WKQMPRVD EPTTGKP
Sbjct: 336  INGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTGKP 395

Query: 259  YKMRRPDGLDVQKGSVLSKVPLLHMHCRELVLPNIAKFIELHKNTLETQQNKPPEILSKP 80
            YKMRRP+GLDVQKGSVLSKVPLLH+HCREL+LPNIAKF+ +  +     QN+ P++  KP
Sbjct: 396  YKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPI-LDPKPKNQNQYPKLSLKP 454

Query: 79   DLLRFVASMPSHMKISWNLMSSYLV 5
            D+LRFVASMP+HMKISWNLMSSYLV
Sbjct: 455  DILRFVASMPNHMKISWNLMSSYLV 479


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  650 bits (1678), Expect = 0.0
 Identities = 320/447 (71%), Positives = 375/447 (83%), Gaps = 11/447 (2%)
 Frame = -1

Query: 1312 STNIAHLGPPKDGPKPRQLLSLPPYQTP---------ISNSSSRVTAISWMKYYFQEIEA 1160
            S N+A LG PK+GPKPRQLLSLPP+            +S   + VTAISW+KYYF EI  
Sbjct: 37   SNNVAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSLVNVSGLPTHVTAISWIKYYFDEIPG 96

Query: 1159 SVIQSHFNKGLVHIDDDSGSDELCTKKQGEMNHLRKIKHNEAMKLGARIYVPVSVAETRI 980
            SV+QSHFNKGLVH++  S  D+   +K+G++  LRKIK NE M+ G RIYVPVSVAE RI
Sbjct: 97   SVVQSHFNKGLVHMER-SNLDDSSLEKEGQIKPLRKIKPNEVMEAGTRIYVPVSVAEARI 155

Query: 979  SKRFNSIPTGTLYPNADEIEYLQRL--VKYKDSAIIVLNKPPRLPVKGNLPVHNSLDXXX 806
            SKRF++IP+GTL+PNADEIEYLQRL  +K++D AI+VLNKPP++P+KGNLPVHNS+D   
Sbjct: 156  SKRFDTIPSGTLHPNADEIEYLQRLWLLKFQDPAILVLNKPPKVPLKGNLPVHNSMDALA 215

Query: 805  XXXLSYGYDEGPKLVHRLDRESSGIHLMGRTKESITHLQWLFSGINKQNSSHKAWNDACQ 626
               L++ Y+EGPKLVHRLDRESSG+ LMGRTKES+ HL WLFS INK  S  KAW+DAC+
Sbjct: 216  AAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFSDINKAKSLSKAWDDACE 275

Query: 625  ATYQKYWALVIGSPKEKEGLICAPLTKVLLNDGKTERVILAHGSGVEASQEAVTEYRVLG 446
            AT Q+YWALVIGSPK+KEG+I APL+KVLL+DGKTERVILA+ SG+EASQEA+TEYRVLG
Sbjct: 276  ATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAITEYRVLG 335

Query: 445  PMINGCSWIELRPLTSRKHQIRVHCAEALGTPIVGDYKYGWFTHRKWKQMPRVDYEPTTG 266
            PMINGCSWIEL P TSRKHQ+RVHCAEALGTPIVGDYKYGWF HR+WKQMPRVD EPTTG
Sbjct: 336  PMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTG 395

Query: 265  KPYKMRRPDGLDVQKGSVLSKVPLLHMHCRELVLPNIAKFIELHKNTLETQQNKPPEILS 86
            KPYKMRRP+GLDVQKGSVLSKVPLLH+HCREL+LPNIAKF+ +  +     QN+ P++  
Sbjct: 396  KPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPI-LDPKPKNQNQYPKLSL 454

Query: 85   KPDLLRFVASMPSHMKISWNLMSSYLV 5
            KPD+LRFVASMP+HMKISWNLMSSYLV
Sbjct: 455  KPDILRFVASMPNHMKISWNLMSSYLV 481


>ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine
            max]
          Length = 554

 Score =  642 bits (1656), Expect = 0.0
 Identities = 316/448 (70%), Positives = 371/448 (82%), Gaps = 9/448 (2%)
 Frame = -1

Query: 1321 VSSSTNIAHLGPPKDGPKPRQLLSLPPY-------QTPISNSSSR--VTAISWMKYYFQE 1169
            +S S NIA L  PK+GPKPRQLLSLPP+       ++ IS S  R  VTA++W+KYYF+ 
Sbjct: 114  ISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPDKSSISGSRQRDYVTAVNWIKYYFKG 173

Query: 1168 IEASVIQSHFNKGLVHIDDDSGSDELCTKKQGEMNHLRKIKHNEAMKLGARIYVPVSVAE 989
               SVI+SHF +GLV ++ D  S    T+K+ +M  +RKI+ NE MK GAR++VPVS+ E
Sbjct: 174  TWGSVIESHFREGLVQMEADDSS----TQKEEQMKPMRKIRPNEVMKRGARVHVPVSICE 229

Query: 988  TRISKRFNSIPTGTLYPNADEIEYLQRLVKYKDSAIIVLNKPPRLPVKGNLPVHNSLDXX 809
            TRISKR+++IP+GTLYPNADEI+YLQRLV YKDSAIIVLNKPP+LPVKG+LPVHNS+D  
Sbjct: 230  TRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGSLPVHNSMDAL 289

Query: 808  XXXXLSYGYDEGPKLVHRLDRESSGIHLMGRTKESITHLQWLFSGINKQNSSHKAWNDAC 629
                LSY YDEGPKLVHRLDRESSGI L+GRTK+S++HLQWLFS IN   SS K WN+AC
Sbjct: 290  AAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLFSNINNAKSSCKDWNEAC 349

Query: 628  QATYQKYWALVIGSPKEKEGLICAPLTKVLLNDGKTERVILAHGSGVEASQEAVTEYRVL 449
            +ATYQ+YWALVIG+PKEKEG+I APL+KVLLNDGKTER+ILAH S VE  QEAVTEYRVL
Sbjct: 350  EATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVL 409

Query: 448  GPMINGCSWIELRPLTSRKHQIRVHCAEALGTPIVGDYKYGWFTHRKWKQMPRVDYEPTT 269
            GP INGCSW+ELRPLT RKHQ+RVHCAEALGTPIVGDYKYGWF H +WKQMPRVD EPTT
Sbjct: 410  GPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTT 469

Query: 268  GKPYKMRRPDGLDVQKGSVLSKVPLLHMHCRELVLPNIAKFIELHKNTLETQQNKPPEIL 89
            GKPYK+RRP+GLDVQKGSVLSKVPLLH+HCRELVLPNI KF+ +  N+ E  +     + 
Sbjct: 470  GKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNNSSEELRT---SLR 526

Query: 88   SKPDLLRFVASMPSHMKISWNLMSSYLV 5
             +PD+LRFVA+MPSHM+ISWNLMSSYLV
Sbjct: 527  EQPDVLRFVATMPSHMRISWNLMSSYLV 554


>ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
            lyrata] gi|297333602|gb|EFH64020.1| hypothetical protein
            ARALYDRAFT_477057 [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score =  625 bits (1613), Expect = e-177
 Identities = 309/449 (68%), Positives = 368/449 (81%), Gaps = 13/449 (2%)
 Frame = -1

Query: 1312 STNIAHLGPPKDGPKPRQLLSLPP---YQTPISNS--------SSRVTAISWMKYYFQEI 1166
            + NIAHLGPPK GP PRQL+SLPP   Y  P  N+        S  VTAISW+K+YF+EI
Sbjct: 34   TNNIAHLGPPKQGPLPRQLISLPPFPGYPLPGKNAGVDGDEGDSGHVTAISWVKFYFEEI 93

Query: 1165 EASVIQSHFNKGLVHIDDDSGSDELCTKKQGEMNHLRKIKHNEAMKLGARIYVPVSVAET 986
                IQ+HF KGLV ++     D     + G +  +RKIKHNE M++G +I++PVS+AE 
Sbjct: 94   HDKAIQTHFTKGLVQMEFRGRRDASRENEDGAIP-MRKIKHNEVMEIGDKIWLPVSIAEM 152

Query: 985  RISKRFNSIPTGTLYPNADEIEYLQRLVKYKDSAIIVLNKPPRLPVKGNLPVHNSLDXXX 806
            RISKR+++IP+GTLYPNADEI YLQRLV++KDSAIIVLNKPP+LPVKGN+P+HNS+D   
Sbjct: 153  RISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALA 212

Query: 805  XXXLSYGYDEGPKLVHRLDRESSGIHLMGRTKESITHLQWLFSGINKQNSSHKAWNDACQ 626
               LS+G DEGP+LVHRLDRE+SG+ +MGR+KESI +L  +FS    +NSS KAWN AC+
Sbjct: 213  AAALSFGKDEGPRLVHRLDRETSGLLVMGRSKESIHYLHSVFSDYKGRNSSCKAWNKACE 272

Query: 625  ATYQKYWALVIGSPKEKEGLICAPLTKVLLNDGKTERVILAHGSGVEASQEAVTEYRVLG 446
            A YQ+YWALVIGSPKEKEGLI APL+KVLL+DGKT+RV+LA GSG EASQEA+TEYRVLG
Sbjct: 273  AMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQEAITEYRVLG 332

Query: 445  PMINGCSWIELRPLTSRKHQIRVHCAEALGTPIVGDYKYGWFTHRKWKQMPRVDYEPTTG 266
            PMINGCSW+ELRP+TSRKHQ+RVHCAEALGT IVGDYKYGWF H++WKQMP+VD EPTTG
Sbjct: 333  PMINGCSWLELRPITSRKHQLRVHCAEALGTSIVGDYKYGWFVHKRWKQMPQVDIEPTTG 392

Query: 265  KPYKMRRPDGLDVQKGSVLSKVPLLHMHCRELVLPNIAKFIELHKNTLETQQNKP--PEI 92
            KPYK+RRP+GLDVQKGSVLSKVPLLH+HCRE+VLPNIAKF+    + L  Q+ +P    I
Sbjct: 393  KPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFL----HVLNQQETEPLRTGI 448

Query: 91   LSKPDLLRFVASMPSHMKISWNLMSSYLV 5
            + KPDLLRFVASMPSHMKISWNLMSSYLV
Sbjct: 449  IDKPDLLRFVASMPSHMKISWNLMSSYLV 477