BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00013961
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ...    56   3e-06

>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
          Length = 1309

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
 Frame = -1

Query: 242 PEKYNGGIGFSRWQKKMKMWLT-VKGLWLVVQYDPPVV-----DQAKPETMVTYTKWAEK 81
           PE ++G   F RWQ K +MWLT +K  W+V    P        D AK   +    KW E 
Sbjct: 27  PEAFDGA-SFKRWQIKTRMWLTDLKLFWVVTSAVPQAASDDSDDAAKAAALAEKAKWDEA 85

Query: 80  DGAAKAAILTALSNALFDVYAS 15
           + A  + +L  LSN LFDVY++
Sbjct: 86  NEACLSRLLNVLSNRLFDVYSA 107