BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00013738
         (840 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]                       248   9e-86
gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-...   253   2e-85
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   251   3e-85
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   251   3e-85
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]     251   4e-85

>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
          Length = 1264

 Score =  248 bits (632), Expect(2) = 9e-86
 Identities = 111/167 (66%), Positives = 141/167 (84%)
 Frame = -1

Query: 840  WKGAVKSEIDSIVSHGTWELVDLPPGSSTIGCKWIFKKKLNTDGSINKYKARLVAKGFRQ 661
            WK AV +E+DSI+S+GTWE+ D P G   +GCKW+FKKKL  DG+I KYKARLVAKG+ Q
Sbjct: 768  WKEAVHNEMDSILSNGTWEITDRPYGCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQ 827

Query: 660  REGIDYFDTYSPVARMTTIRMLLALAAIHGLHVHQMDVNTAFLHGKLEEEIYMDQPEGFV 481
            +EG D+FDTYSPVARMTTIR+LL+LAA +GL VHQMDV TAFL+G+L+EEIYM+QP+GFV
Sbjct: 828  KEGEDFFDTYSPVARMTTIRVLLSLAASYGLLVHQMDVKTAFLNGELDEEIYMEQPDGFV 887

Query: 480  ASGNERKVCKLIKSIYGLKQAPKDWHKEFDSKVAPFGFVVNDSDKCL 340
              G E KVCKL+KS+YGLKQAPK WH++FD+ +   GF +N++D+C+
Sbjct: 888  VKGQESKVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFAINEADRCV 934



 Score = 96.3 bits (238), Expect(2) = 9e-86
 Identities = 44/74 (59%), Positives = 60/74 (81%)
 Frame = -2

Query: 224  FGTNIEIINAAKTFLKSNFDMKDMGEAQVILGIKLTRSADGITLSQSHYIEKSILERYGY 45
            FGTNI++IN  K+FL  +FDMKD+GEA VIL IKL ++  GITLSQSHY+EK +L+R+G+
Sbjct: 956  FGTNIDVINEVKSFLSKSFDMKDLGEADVILNIKLIKADGGITLSQSHYVEK-VLKRFGF 1014

Query: 44   TKCRIASTPYDSKV 3
            ++C+ + TPYD  V
Sbjct: 1015 SECKPSPTPYDPSV 1028


>gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
          Length = 713

 Score =  253 bits (645), Expect(2) = 2e-85
 Identities = 114/167 (68%), Positives = 142/167 (85%)
 Frame = -1

Query: 840 WKGAVKSEIDSIVSHGTWELVDLPPGSSTIGCKWIFKKKLNTDGSINKYKARLVAKGFRQ 661
           WK AV+SE+DSI+++GTWE+ + P G   +GCKW+FKKKL  DG+I KYKARLVAKG+ Q
Sbjct: 199 WKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 258

Query: 660 REGIDYFDTYSPVARMTTIRMLLALAAIHGLHVHQMDVNTAFLHGKLEEEIYMDQPEGFV 481
           +EG D+FDTYSPVAR+TTIR+LL+LAA HGL VHQMDV TAFL+G+L+EEIYMDQP+GFV
Sbjct: 259 KEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFV 318

Query: 480 ASGNERKVCKLIKSIYGLKQAPKDWHKEFDSKVAPFGFVVNDSDKCL 340
             G E KVCKL+KS+YGLKQAPK WH++FD  +   GFVVN++DKC+
Sbjct: 319 VEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFVVNEADKCV 365



 Score = 90.5 bits (223), Expect(2) = 2e-85
 Identities = 44/71 (61%), Positives = 53/71 (74%)
 Frame = -2

Query: 224 FGTNIEIINAAKTFLKSNFDMKDMGEAQVILGIKLTRSADGITLSQSHYIEKSILERYGY 45
           FGTN+E+IN  K+FL  NFDMKD+G A VIL IKL R  +GITL QSHY+EK IL R+GY
Sbjct: 387 FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEK-ILNRFGY 445

Query: 44  TKCRIASTPYD 12
              + + TPYD
Sbjct: 446 IDSKPSPTPYD 456


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  251 bits (640), Expect(2) = 3e-85
 Identities = 113/167 (67%), Positives = 141/167 (84%)
 Frame = -1

Query: 840  WKGAVKSEIDSIVSHGTWELVDLPPGSSTIGCKWIFKKKLNTDGSINKYKARLVAKGFRQ 661
            WK AV+SE+DSI+++GTWE+ + P G   +GCKW+FKKKL  DG+I KYKARLVAKG+ Q
Sbjct: 806  WKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 865

Query: 660  REGIDYFDTYSPVARMTTIRMLLALAAIHGLHVHQMDVNTAFLHGKLEEEIYMDQPEGFV 481
            +EG D+FDTYSPVAR+TTIR+LL+LAA HGL VHQMDV TAFL+G+L+EEIYMDQP+GFV
Sbjct: 866  KEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFV 925

Query: 480  ASGNERKVCKLIKSIYGLKQAPKDWHKEFDSKVAPFGFVVNDSDKCL 340
              G E KVCKL+KS+YGLKQAPK WH++FD  +   GF VN++DKC+
Sbjct: 926  LEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCV 972



 Score = 91.3 bits (225), Expect(2) = 3e-85
 Identities = 45/71 (63%), Positives = 53/71 (74%)
 Frame = -2

Query: 224  FGTNIEIINAAKTFLKSNFDMKDMGEAQVILGIKLTRSADGITLSQSHYIEKSILERYGY 45
            FGTNIE+IN  K+FL  NFDMKD+G A VIL IKL R  +GITL QSHY+EK IL R+GY
Sbjct: 994  FGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEK-ILNRFGY 1052

Query: 44   TKCRIASTPYD 12
               + + TPYD
Sbjct: 1053 IDSKPSPTPYD 1063


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  251 bits (640), Expect(2) = 3e-85
 Identities = 113/167 (67%), Positives = 141/167 (84%)
 Frame = -1

Query: 840  WKGAVKSEIDSIVSHGTWELVDLPPGSSTIGCKWIFKKKLNTDGSINKYKARLVAKGFRQ 661
            WK AV+SE+DSI+++GTWE+ + P G   +GCKW+FKKKL  DG+I KYKARLVAKG+ Q
Sbjct: 806  WKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 865

Query: 660  REGIDYFDTYSPVARMTTIRMLLALAAIHGLHVHQMDVNTAFLHGKLEEEIYMDQPEGFV 481
            +EG D+FDTYSPVAR+TTIR+LL+LAA HGL VHQMDV TAFL+G+L+EEIYMDQP+GFV
Sbjct: 866  KEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFV 925

Query: 480  ASGNERKVCKLIKSIYGLKQAPKDWHKEFDSKVAPFGFVVNDSDKCL 340
              G E KVCKL+KS+YGLKQAPK WH++FD  +   GF VN++DKC+
Sbjct: 926  LEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCV 972



 Score = 91.3 bits (225), Expect(2) = 3e-85
 Identities = 45/71 (63%), Positives = 53/71 (74%)
 Frame = -2

Query: 224  FGTNIEIINAAKTFLKSNFDMKDMGEAQVILGIKLTRSADGITLSQSHYIEKSILERYGY 45
            FGTNIE+IN  K+FL  NFDMKD+G A VIL IKL R  +GITL QSHY+EK IL R+GY
Sbjct: 994  FGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEK-ILNRFGY 1052

Query: 44   TKCRIASTPYD 12
               + + TPYD
Sbjct: 1053 IDSKPSPTPYD 1063


>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1861

 Score =  251 bits (641), Expect(2) = 4e-85
 Identities = 113/167 (67%), Positives = 141/167 (84%)
 Frame = -1

Query: 840  WKGAVKSEIDSIVSHGTWELVDLPPGSSTIGCKWIFKKKLNTDGSINKYKARLVAKGFRQ 661
            WK AV+SE+DSI+++GTWE+ + P G   +GCKW+FKKKL  DG+I KYKARLVAKG+ Q
Sbjct: 1220 WKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 1279

Query: 660  REGIDYFDTYSPVARMTTIRMLLALAAIHGLHVHQMDVNTAFLHGKLEEEIYMDQPEGFV 481
            +EG D+FDTYSPVAR+TTIR+LL+LAA HGL VHQMDV TAFL+G+L+EEIYMDQP+GFV
Sbjct: 1280 KEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFV 1339

Query: 480  ASGNERKVCKLIKSIYGLKQAPKDWHKEFDSKVAPFGFVVNDSDKCL 340
              G E KVCKL+KS+YGLKQAPK WH++FD  +   GF VN++DKC+
Sbjct: 1340 VEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCV 1386



 Score = 90.5 bits (223), Expect(2) = 4e-85
 Identities = 44/71 (61%), Positives = 53/71 (74%)
 Frame = -2

Query: 224  FGTNIEIINAAKTFLKSNFDMKDMGEAQVILGIKLTRSADGITLSQSHYIEKSILERYGY 45
            FGTN+E+IN  K+FL  NFDMKD+G A VIL IKL R  +GITL QSHY+EK IL R+GY
Sbjct: 1408 FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEK-ILNRFGY 1466

Query: 44   TKCRIASTPYD 12
               + + TPYD
Sbjct: 1467 IDSKPSPTPYD 1477