BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00012961
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein...   120   1e-25
ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]...   102   4e-20
ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative ...    97   1e-18
ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein...    95   7e-18
ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...    94   1e-17

>ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis
            vinifera] gi|297738576|emb|CBI27821.3| unnamed protein
            product [Vitis vinifera]
          Length = 1091

 Score =  120 bits (300), Expect = 1e-25
 Identities = 60/106 (56%), Positives = 84/106 (79%), Gaps = 2/106 (1%)
 Frame = -3

Query: 312  RKREKKSRYETEEA--GDIDDQEEMEDEYNNRNYRQTDDTMNDDRDEVGENPKDLLAAAG 139
            R+++ KSRY++EEA    +DDQ+EMEDE  N N+R++ + MN+  D+  ++ +DLLAAAG
Sbjct: 960  RRKKDKSRYDSEEARADAMDDQDEMEDEDTNMNHRESTNQMNNQDDDGEDDAQDLLAAAG 1019

Query: 138  LEDSDAEADTVENPSATNRRRRAWSESEDDEPVQRQPESSPLRENS 1
            LEDSDAE D +  PS+ NRR+RAWSES++DEP  ++PESSP+RENS
Sbjct: 1020 LEDSDAE-DDMAGPSSGNRRKRAWSESDEDEPQDQRPESSPVRENS 1064


>ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]
            gi|222833309|gb|EEE71786.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 1056

 Score =  102 bits (253), Expect = 4e-20
 Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
 Frame = -3

Query: 312  RKREK--KSRYETEEAGDIDDQEEMEDEYNNRNYRQTDDTMNDDRDEVGENPKDLLAAAG 139
            RK+EK  +SRYE EEA  +DD +E ED+  N N+R+    MND  D   EN +D+LAAAG
Sbjct: 958  RKKEKSSRSRYEMEEADMMDDHDEPEDDDANVNFREPGYQMNDQDDNAEENAQDVLAAAG 1017

Query: 138  LEDSDAEADTVENPSATNRRRRAWSESEDDEPVQRQPESS 19
            LEDSDA+ D    PS+  RR+RAWSES++DE  +R+P+SS
Sbjct: 1018 LEDSDADDDAAA-PSSAGRRKRAWSESDEDEISERKPQSS 1056


>ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis]
            gi|223544778|gb|EEF46294.1| tpr repeat nuclear
            phosphoprotein, putative [Ricinus communis]
          Length = 1065

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 58/108 (53%), Positives = 76/108 (70%), Gaps = 4/108 (3%)
 Frame = -3

Query: 312  RKREK--KSRYETEE--AGDIDDQEEMEDEYNNRNYRQTDDTMNDDRDEVGENPKDLLAA 145
            RK+EK  KSRYE EE  A  +DD+EE+EDE  N NY +  + +++  ++  EN +DLLAA
Sbjct: 934  RKKEKSSKSRYEIEEGEADMMDDREELEDEDANVNYGEHKNRLDNQDEDAEENAQDLLAA 993

Query: 144  AGLEDSDAEADTVENPSATNRRRRAWSESEDDEPVQRQPESSPLRENS 1
            AGLEDSDAE      PS+T RRRRA SES+DDE +  + +SSP+R NS
Sbjct: 994  AGLEDSDAEDAA---PSSTARRRRALSESDDDEVLDSKLQSSPVRGNS 1038


>ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1086

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 61/109 (55%), Positives = 77/109 (70%), Gaps = 5/109 (4%)
 Frame = -3

Query: 312  RKREK--KSRYETEEA-GDIDDQEEMEDEYNNRNYRQTDDT-MNDDRDEVGENPKDLLAA 145
            RK++K  KSRY+TEE   D+ D++EMEDE  + NYR+   T MNDD +E   N + LLAA
Sbjct: 955  RKKDKHSKSRYDTEEPENDMMDEQEMEDEEADINYREEPQTQMNDDAEE---NAQGLLAA 1011

Query: 144  AGLEDSDAEADTVENPSATNRRRRAWSESEDDEP-VQRQPESSPLRENS 1
            AGLEDSDA+ +     S+  RRR+A SES+DDEP +QRQ  SSP RENS
Sbjct: 1012 AGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQ--SSPARENS 1058


>ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein
            CTR9 homolog [Cucumis sativus]
          Length = 1050

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 51/105 (48%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
 Frame = -3

Query: 312  RKREKKSRYETEEA-GDIDDQEEMEDEYNNRNYRQTDDTMNDDRDEVGENPKDLLAAAGL 136
            + R+ KS YETEEA  D+ D +E+ +E NN +YR++   +ND  D+   N +D LA AGL
Sbjct: 935  KDRKGKSHYETEEADNDMMDDQELYNEDNNISYRESRSQVNDQGDDFEGNDQDALAEAGL 994

Query: 135  EDSDAEADTVENPSATNRRRRAWSESEDDEPVQRQPESSPLRENS 1
            EDSDAE +     S   RRR  WS+SE+DEP+  Q ES   RENS
Sbjct: 995  EDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENS 1039