BLASTX nr result
ID: Bupleurum21_contig00012931
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00012931
(1164 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL13083.1| putative translation-initiation factor 3 subunit ... 390 e-106
ref|XP_002281426.1| PREDICTED: eukaryotic translation initiation... 389 e-105
emb|CBI29961.3| unnamed protein product [Vitis vinifera] 382 e-104
emb|CAN81874.1| hypothetical protein VITISV_038366 [Vitis vinifera] 377 e-102
ref|NP_191174.1| translation initiation factor eIF-3 subunit 8 [... 365 2e-98
>gb|AAL13083.1| putative translation-initiation factor 3 subunit [Prunus avium]
Length = 934
Score = 390 bits (1001), Expect = e-106
Identities = 210/319 (65%), Positives = 241/319 (75%), Gaps = 7/319 (2%)
Frame = +3
Query: 3 MHINLELLEAVHLICAMLLEVPNMASNSIDAKHRFISKTLRRLLDISERQTFTGPPENVR 182
MHIN ELLEAVHLICAMLLEVPNMA+N DAK R ISKT RRLL++SE+QTFTGPPENVR
Sbjct: 617 MHINPELLEAVHLICAMLLEVPNMAANIHDAKRRLISKTFRRLLEVSEKQTFTGPPENVR 676
Query: 183 DHVLAATRALSKGDFQKAFDGIKSLDVWRLLKDRDNVLEMLKSKIKEEALRTYLFTYARS 362
DHV+AA+RAL KGDFQKAFD I SLDVW+LL +R+NVLEMLK+KIKEEALRTY FTY+ S
Sbjct: 677 DHVMAASRALGKGDFQKAFDVINSLDVWKLLPNRENVLEMLKAKIKEEALRTY-FTYSSS 735
Query: 363 YDSLSLDQLAKMFDLTDAQTHVIVSKMMITEELHASLDQPSRCIVFHEVEHTRLQALAFH 542
Y +LSL+Q K+FDL++AQ H IVSKMM+ EEL AS DQP+RCIVFH++E TRLQALAF
Sbjct: 736 YKTLSLEQPTKLFDLSEAQIHSIVSKMMVNEELFASWDQPTRCIVFHDIEQTRLQALAFQ 795
Query: 543 LTEKLSVLAESNERAVEARIGGVGSDPLPTRRRDGQDYA--AAGGGSKWQDNMXXXXXXX 716
LTEKL++LAESNERA EARIGG G D LP RRRD QDYA A GG +WQDN
Sbjct: 796 LTEKLAILAESNERATEARIGGGGLD-LPQRRRDNQDYATGTAAGGGRWQDNNLSFNQGR 854
Query: 717 XXXXXXXXXXXXXXXXXXXNYTGGYQRDRSGQTRGGYSGTRYQDSSYAGSGR-GYQN--- 884
N GGY RDR+GQ RG +RYQD++YAGSGR GYQ
Sbjct: 855 QGGGSGRAGYNTGGRSFNQNAGGGYSRDRAGQYRGSGQNSRYQDAAYAGSGRTGYQTGPA 914
Query: 885 -NSTRDGSVRMVSLNRGIR 938
++D S RMVSL+RG+R
Sbjct: 915 ARGSQDTSTRMVSLHRGLR 933
>ref|XP_002281426.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like
[Vitis vinifera]
Length = 946
Score = 389 bits (998), Expect = e-105
Identities = 209/324 (64%), Positives = 245/324 (75%), Gaps = 12/324 (3%)
Frame = +3
Query: 3 MHINLELLEAVHLICAMLLEVPNMASNSIDAKHRFISKTLRRLLDISERQTFTGPPENVR 182
MHINLELLE VHLICAMLLEVPNMA+N+ DAK + ISKT RRLL++SERQTFTGPPENVR
Sbjct: 627 MHINLELLEGVHLICAMLLEVPNMAANTHDAKRKVISKTFRRLLEVSERQTFTGPPENVR 686
Query: 183 DHVLAATRALSKGDFQKAFDGIKSLDVWRLLKDRDNVLEMLKSKIKEEALRTYLFTYARS 362
DHV+AATRALSKGDFQKAFD IKSLD W+LL++R++VLEML++KIKEEALRTYLFTY+ S
Sbjct: 687 DHVMAATRALSKGDFQKAFDVIKSLDFWKLLRNREDVLEMLRAKIKEEALRTYLFTYSLS 746
Query: 363 YDSLSLDQLAKMFDLTDAQTHVIVSKMMITEELHASLDQPSRCIVFHEVEHTRLQALAFH 542
Y++LSLDQL KMFDL++ TH I+SKMM+ EELHAS DQP+RCIVFH+VEHTRLQAL+F
Sbjct: 747 YNTLSLDQLTKMFDLSETLTHSIISKMMVMEELHASWDQPTRCIVFHDVEHTRLQALSFQ 806
Query: 543 LTEKLSVLAESNERAVEARIGGVGSDPLPTRRRDGQDYA-AAGGGSKWQDNMXXXXXXXX 719
LT+KL++LAE+NERA EA+IGG G D LP RRRDGQDYA AA G KWQDN
Sbjct: 807 LTDKLTILAENNERAYEAKIGGGGLD-LPLRRRDGQDYAGAASVGGKWQDNF--SFSQGR 863
Query: 720 XXXXXXXXXXXXXXXXXXNYTGGYQRDRSGQTR------GGYSGTRYQDSSYAGSGRGYQ 881
+ G + RDR GQ+R GGY TRYQD++Y + YQ
Sbjct: 864 QGGVRTGYGVGGRPLGPGSSAGTFSRDRGGQSRGTGGYSGGYQSTRYQDAAYGRT--AYQ 921
Query: 882 NNST-----RDGSVRMVSLNRGIR 938
+S D S RMVSLNRG+R
Sbjct: 922 TSSAVRGSQMDTSTRMVSLNRGVR 945
>emb|CBI29961.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 382 bits (981), Expect = e-104
Identities = 206/318 (64%), Positives = 240/318 (75%), Gaps = 6/318 (1%)
Frame = +3
Query: 3 MHINLELLEAVHLICAMLLEVPNMASNSIDAKHRFISKTLRRLLDISERQTFTGPPENVR 182
MHINLELLE VHLICAMLLEVPNMA+N+ DAK + ISKT RRLL++SERQTFTGPPENVR
Sbjct: 547 MHINLELLEGVHLICAMLLEVPNMAANTHDAKRKVISKTFRRLLEVSERQTFTGPPENVR 606
Query: 183 DHVLAATRALSKGDFQKAFDGIKSLDVWRLLKDRDNVLEMLKSKIKEEALRTYLFTYARS 362
DHV+AATRALSKGDFQKAFD IKSLD W+LL++R++VLEML++KIKEEALRTYLFTY+ S
Sbjct: 607 DHVMAATRALSKGDFQKAFDVIKSLDFWKLLRNREDVLEMLRAKIKEEALRTYLFTYSLS 666
Query: 363 YDSLSLDQLAKMFDLTDAQTHVIVSKMMITEELHASLDQPSRCIVFHEVEHTRLQALAFH 542
Y++LSLDQL KMFDL++ TH I+SKMM+ EELHAS DQP+RCIVFH+VEHTRLQAL+F
Sbjct: 667 YNTLSLDQLTKMFDLSETLTHSIISKMMVMEELHASWDQPTRCIVFHDVEHTRLQALSFQ 726
Query: 543 LTEKLSVLAESNERAVEARIGGVGSDPLPTRRRDGQDYA-AAGGGSKWQDNMXXXXXXXX 719
LT+KL++LAE+NERA EA+IGG G D LP RRRDGQDYA AA G KWQDN
Sbjct: 727 LTDKLTILAENNERAYEAKIGGGGLD-LPLRRRDGQDYAGAASVGGKWQDNF-------- 777
Query: 720 XXXXXXXXXXXXXXXXXXNYTGGYQRDRSGQTRGGYSGTRYQDSSYAGSGRGYQNNST-- 893
GG R G + GGY TRYQD++Y + YQ +S
Sbjct: 778 --------------SFSQGRQGGQSRGTGGYS-GGYQSTRYQDAAYGRT--AYQTSSAVR 820
Query: 894 ---RDGSVRMVSLNRGIR 938
D S RMVSLNRG+R
Sbjct: 821 GSQMDTSTRMVSLNRGVR 838
>emb|CAN81874.1| hypothetical protein VITISV_038366 [Vitis vinifera]
Length = 1047
Score = 377 bits (969), Expect = e-102
Identities = 204/334 (61%), Positives = 243/334 (72%), Gaps = 7/334 (2%)
Frame = +3
Query: 3 MHINLELLEAVHLICAMLLEVPNMASNSIDAKHRFISKTLRRLLDISERQTFTGPPENVR 182
MHINLELLE VHLICAMLLEVPNMA+N+ DAK + ISKT RRLL++SERQTFTGPPENVR
Sbjct: 626 MHINLELLEGVHLICAMLLEVPNMAANTHDAKRKVISKTFRRLLEVSERQTFTGPPENVR 685
Query: 183 DHVLAATRALSKGDFQKAFDGIKSLDVWRLLKDRDNVLEMLKSKIKEEALRTYLFTYARS 362
DHV+AATRALSKGDFQKAFD IKSLD W+LL++R++VLEML++KIKEEALRTYLFTY+ S
Sbjct: 686 DHVMAATRALSKGDFQKAFDVIKSLDFWKLLRNREDVLEMLRAKIKEEALRTYLFTYSLS 745
Query: 363 YDSLSLDQLAKMFDLTDAQTHVIVSKMMITEELHASLDQPSRCIVFHEVEHTRLQALAFH 542
Y++LSLDQL KMFDL++ TH I+SKMM+ EELHAS DQP+RCIVFH+VEHTRLQAL+F
Sbjct: 746 YNTLSLDQLTKMFDLSETLTHSIISKMMVMEELHASWDQPTRCIVFHDVEHTRLQALSFQ 805
Query: 543 LTEKLSVLAESNERAVEARIGGVGSDPLPTRRRDGQDYA-AAGGGSKWQDNMXXXXXXXX 719
LT+KL++LAE+NERA EA+IGG G D LP RRRDGQDYA AA G KWQDN
Sbjct: 806 LTDKLTILAENNERAYEAKIGGGGLD-LPLRRRDGQDYAGAASVGGKWQDNF--SFSQGR 862
Query: 720 XXXXXXXXXXXXXXXXXXNYTGGYQRDRSGQTR------GGYSGTRYQDSSYAGSGRGYQ 881
+ G + RDR GQ+R GGY TRYQD++Y + YQ
Sbjct: 863 QGGVRTGYGVGGRPLGPGSSAGTFSRDRGGQSRGTGGYSGGYQSTRYQDAAYGRT--AYQ 920
Query: 882 NNSTRDGSVRMVSLNRGIRI*RVLSSEKHNIICC 983
+S GS S + + L+ I+ C
Sbjct: 921 TSSAVRGSQMDTSTRMSLLLTFALNKWNQXILPC 954
>ref|NP_191174.1| translation initiation factor eIF-3 subunit 8 [Arabidopsis thaliana]
gi|334186011|ref|NP_001190102.1| translation initiation
factor eIF-3 subunit 8 [Arabidopsis thaliana]
gi|23503063|sp|O49160.2|EIF3C_ARATH RecName:
Full=Eukaryotic translation initiation factor 3 subunit
C; Short=eIF3c; AltName: Full=Eukaryotic translation
initiation factor 3 subunit 8; AltName: Full=eIF3 p110;
AltName: Full=p105 gi|7572913|emb|CAB87414.1| PROBABLE
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 8
[Arabidopsis thaliana] gi|17381100|gb|AAL36362.1|
putative eukaryotic translation initiation factor 3
subunit 8 [Arabidopsis thaliana]
gi|25054977|gb|AAN71960.1| putative eukaryotic
translation initiation factor 3 subunit 8 [Arabidopsis
thaliana] gi|332645965|gb|AEE79486.1| translation
initiation factor eIF-3 subunit 8 [Arabidopsis thaliana]
gi|332645966|gb|AEE79487.1| translation initiation factor
eIF-3 subunit 8 [Arabidopsis thaliana]
Length = 900
Score = 365 bits (936), Expect = 2e-98
Identities = 200/320 (62%), Positives = 230/320 (71%), Gaps = 8/320 (2%)
Frame = +3
Query: 3 MHINLELLEAVHLICAMLLEVPNMASNSIDAKHRFISKTLRRLLDISERQTFTGPPENVR 182
MH+NLELLEAVHLICAMLLEVPNMA+NS DAK R ISK RRLL+ISERQ FT PPENVR
Sbjct: 606 MHLNLELLEAVHLICAMLLEVPNMAANSHDAKRRVISKNFRRLLEISERQAFTAPPENVR 665
Query: 183 DHVLAATRALSKGDFQKAFDGIKSLDVWRLLKDRDNVLEMLKSKIKEEALRTYLFTYARS 362
DHV+AATRAL+KGDFQKAF+ + SL+VWRLLK+RD++L+M+K +IKEEALRTYLFTY+ S
Sbjct: 666 DHVMAATRALTKGDFQKAFEVLNSLEVWRLLKNRDSILDMVKDRIKEEALRTYLFTYSSS 725
Query: 363 YDSLSLDQLAKMFDLTDAQTHVIVSKMMITEELHASLDQPSRCIVFHEVEHTRLQALAFH 542
Y+SLSLDQLAKMFD+++ Q H IVSKMMI EELHAS DQP+RCIVFHEV+H+RLQ+LAF
Sbjct: 726 YESLSLDQLAKMFDVSEPQVHSIVSKMMINEELHASWDQPTRCIVFHEVQHSRLQSLAFQ 785
Query: 543 LTEKLSVLAESNERAVEARIGGVGSDPLPTRRRDGQDY--AAAGGGSKWQDNMXXXXXXX 716
LTEKLS+LAESNERA+E+R GG G D RR + QDY AA+GGG WQD
Sbjct: 786 LTEKLSILAESNERAMESRTGGGGLDLSSRRRDNNQDYAGAASGGGGYWQDK-------- 837
Query: 717 XXXXXXXXXXXXXXXXXXXNYTGGYQRDRSGQTRGGYSGTRYQDS------SYAGSGRGY 878
NY G Q +RSG G SG Q S YAG
Sbjct: 838 ------------------ANYGQGRQGNRSGYGGGRSSGQNGQWSGQNRGGGYAGRVGSG 879
Query: 879 QNNSTRDGSVRMVSLNRGIR 938
DGS RMVSLNRG+R
Sbjct: 880 NRGMQMDGSSRMVSLNRGVR 899