BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00012834
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...    73   3e-11
ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus ...    71   8e-11
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...    69   3e-10
ref|XP_002882458.1| hypothetical protein ARALYDRAFT_896735 [Arab...    66   3e-09
dbj|BAH20429.1| AT3G06240 [Arabidopsis thaliana]                       65   4e-09

>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
 Frame = -2

Query: 373 DYKVMRTA-----DSQIWGIMVTVYSLKSNSWTRADTITNEIRLKGQFGAHVNGTLYWLT 209
           DYK++R A     D + +   V V+SL+ NSW R   +   +   G+ G + NG L+WL 
Sbjct: 152 DYKLVRIAQFGGVDRKSFESEVKVFSLRKNSWRRIADMPYCVLYPGENGIYANGALHWLV 211

Query: 208 YSD---YISDYIVAFDLGVAEHRKLPHP-VVDETGMSGSGLIVFNRRLCLIAHYPDSRTD 41
             D    ++D IVA DLGV ++  +P P  VD     G G  V    L L+A+    R D
Sbjct: 212 SQDPDSTVADTIVALDLGVEDYHVVPKPEFVDMNCNMGVG--VLQGCLSLLAYARSERVD 269

Query: 40  IWMMNDNGVENSW 2
           +W+M +  V+ SW
Sbjct: 270 VWVMEEYMVKESW 282


>ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223534616|gb|EEF36313.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 414

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 13/137 (9%)
 Frame = -2

Query: 373 DYKVMRTADSQIWGIM-----VTVYSLKSNSWTRADTITNEIRLKGQFGAHVNGTLYWLT 209
           DYKV+R      + +        VYSLKSNSW + D ++  I    + G  V   L+WL 
Sbjct: 158 DYKVIRLGQYLDFSLQQFETDTMVYSLKSNSWRKIDGMSCIIGFDQKMGVLVGEALHWLA 217

Query: 208 YSDYI---SDYIVAFDLGVAEHRKLPHPVVDETGMSGS-----GLIVFNRRLCLIAHYPD 53
             D I    D IVA +LGV + R++P P V   G + +      L V    L + A Y +
Sbjct: 218 SRDRILLNPDVIVALNLGVEDFREVPGPDVVVVGANPNQNPSLNLGVVEEWLSVFAIYNN 277

Query: 52  SRTDIWMMNDNGVENSW 2
           +R DIW+M + G ++SW
Sbjct: 278 TRLDIWVMKEYGAKDSW 294


>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
 Frame = -2

Query: 373 DYKVMRTAD-----SQIWGIMVTVYSLKSNSWTRADTITNEIRLKGQFGAHVNGTLYWLT 209
           DYK++R A       + +   V VYSL+  SW R   +   +   G  G   NG L+W+ 
Sbjct: 159 DYKLVRIAQFGGGGKRSFESEVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGALHWVV 218

Query: 208 YSD---YISDYIVAFDLGVAEHRKLPHPVVDETGMSGSGLIVFNRRLCLIAHYPDSRTDI 38
             +    +++ +VA DLGV ++R++  P   +       L V    LC +A++   R D+
Sbjct: 219 GENPESNVANIVVALDLGVEDYREVLQPEYKDKNFY-IDLGVLRGCLCFLANFLGERVDV 277

Query: 37  WMMNDNGVENSW 2
           WMM + GV+ SW
Sbjct: 278 WMMKEYGVKESW 289


>ref|XP_002882458.1| hypothetical protein ARALYDRAFT_896735 [Arabidopsis lyrata subsp.
           lyrata] gi|297328298|gb|EFH58717.1| hypothetical protein
           ARALYDRAFT_896735 [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
 Frame = -2

Query: 373 DYKVMRTADSQIWG---IMVTVYSLKSNSWTRADTITNEIRLKGQ-----FGAHVNGTLY 218
           DYKV++   + +     +  +VYSLK+NSW R   +      KG       G H NG ++
Sbjct: 197 DYKVVKLVATSVSNQHILDASVYSLKANSWRRICILN----YKGSNAFHTCGVHFNGAIH 252

Query: 217 WLTYSDYISDYIVAFDLGVAEHRKLPHPVVDETGMSGSGLIV---FNRRLCLIAHYPDSR 47
           W+         I+ FDL   E R++P P   E      G  +    N RLC++ H     
Sbjct: 253 WVLTRHEDHRVILVFDLTTEEFREMPFPDEAEDCSHKRGEFMVGCLNGRLCVVNHCNGQH 312

Query: 46  TDIWMMNDNGVENSW 2
            DIW+MN+ G   SW
Sbjct: 313 DDIWVMNEYGEAKSW 327


>dbj|BAH20429.1| AT3G06240 [Arabidopsis thaliana]
          Length = 241

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
 Frame = -2

Query: 373 DYKVMRTADSQIWGIMVTVYSLKSNSWTRADTITNEIRLKGQF--GAHVNGTLYWL-TYS 203
           DYK+++   +    +  +VYSLK++SW R   +  E    G +  G H NG ++W+ T S
Sbjct: 38  DYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHN-DGSYTSGVHFNGAIHWVFTES 96

Query: 202 DYISDYIVAFDLGVAEHRKLPHP-VVDETGMSGSGLIV--FNRRLCLIAHYPDSRTDIWM 32
            +    +VAFD+   E R++P P   ++     S  +V   N RLC++    D   DIW+
Sbjct: 97  RHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWV 156

Query: 31  MNDNGVENSW 2
           M++ G   SW
Sbjct: 157 MSEYGEAKSW 166