BLASTX nr result
ID: Bupleurum21_contig00012830
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00012830
(1073 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat... 300 1e-88
ref|XP_002873432.1| pentatricopeptide repeat-containing protein ... 292 8e-83
ref|NP_196557.1| pentatricopeptide repeat-containing protein [Ar... 291 2e-82
gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa] 291 2e-82
emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera] 307 3e-81
>ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
gi|449506934|ref|XP_004162888.1| PREDICTED: putative
pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1067
Score = 300 bits (768), Expect(2) = 1e-88
Identities = 138/204 (67%), Positives = 173/204 (84%), Gaps = 3/204 (1%)
Frame = +1
Query: 436 FKHFESMNKMYKLTPRMEHYSCMVDLLGHAGEFDKLEDFVNRMPMNPNDLIWRTVLGACC 615
F HF+SM+++Y L PRMEH+SCMVDLLG GE +K+EDF+N+MP+ PN LIWRTVLGACC
Sbjct: 815 FSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACC 874
Query: 616 KASGRKNDLGRRAADMLMQLEPHNSANYVLLSNF---GGKWEDMEKTRSAMSKAAIKKEG 786
+A+GR LGRRAA+ML+++EP N+ NY+LLSN GGKW+D+ KTR AM KA +KKE
Sbjct: 875 RANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEA 934
Query: 787 GCSWVTMKDGVHVFVAGDKLYPDKDAIYEKIKELQTKMKDTGYVPQTKFALYDLDPENIE 966
GCSWVTMKDGVHVFVAGDK +P+KD IYEK+KEL KM+ GY+P+T+FALYDL+ E+ E
Sbjct: 935 GCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKE 994
Query: 967 ELLSYHSERLAVAFVLTRKSELPV 1038
ELLSYHSE++AVAFVLTR S++P+
Sbjct: 995 ELLSYHSEKIAVAFVLTRPSKMPI 1018
Score = 54.3 bits (129), Expect(2) = 1e-88
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +3
Query: 351 MKLHGPLPDHVTFVGVLSACSHVGLVS 431
MKL GPLPDHVTFVGVLSACSH GLV+
Sbjct: 786 MKLQGPLPDHVTFVGVLSACSHAGLVN 812
>ref|XP_002873432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297319269|gb|EFH49691.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 970
Score = 292 bits (747), Expect(2) = 8e-83
Identities = 140/206 (67%), Positives = 164/206 (79%), Gaps = 5/206 (2%)
Frame = +1
Query: 436 FKHFESMNKMYKLTPRMEHYSCMVDLLGHAGEFDKLEDFVNRMPMNPNDLIWRTVLGACC 615
FKHFESM+ Y L PR+EH+SCM DLLG AGE DKLEDF+ +MPM PN LIWRTVLGACC
Sbjct: 716 FKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACC 775
Query: 616 KASGRKNDLGRRAADMLMQLEPHNSANYVLLSNF---GGKWEDMEKTRSAMSKAAIKKEG 786
+A+GRK +LG++AA+ML QLEP N+ NYVLL N GG+WED+ K R M A +KKE
Sbjct: 776 RANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEA 835
Query: 787 GCSWVTMKDGVHVFVAGDKLYPDKDAIYEKIKELQTKMKDTGYVPQTKFALYDLDPENIE 966
G SWVTMKDGVH+FVAGDK +PD D IY+K+KEL KM+D GYVPQT FALYDL+ EN E
Sbjct: 836 GYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKE 895
Query: 967 ELLSYHSERLAVAFVLT--RKSELPV 1038
E+LSYHSE+LAVAFVL R S LP+
Sbjct: 896 EILSYHSEKLAVAFVLAAQRSSTLPI 921
Score = 42.7 bits (99), Expect(2) = 8e-83
Identities = 21/27 (77%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Frame = +3
Query: 351 MKLHGPLP-DHVTFVGVLSACSHVGLV 428
MKL G P DHVTFVGVLSACSH GL+
Sbjct: 686 MKLDGQTPPDHVTFVGVLSACSHAGLL 712
>ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing protein
At5g09950 gi|9758973|dbj|BAB09416.1| selenium-binding
protein-like [Arabidopsis thaliana]
gi|332004087|gb|AED91470.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 995
Score = 291 bits (744), Expect(2) = 2e-82
Identities = 139/206 (67%), Positives = 164/206 (79%), Gaps = 5/206 (2%)
Frame = +1
Query: 436 FKHFESMNKMYKLTPRMEHYSCMVDLLGHAGEFDKLEDFVNRMPMNPNDLIWRTVLGACC 615
FKHFESM+ Y L PR+EH+SCM D+LG AGE DKLEDF+ +MPM PN LIWRTVLGACC
Sbjct: 741 FKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACC 800
Query: 616 KASGRKNDLGRRAADMLMQLEPHNSANYVLLSNF---GGKWEDMEKTRSAMSKAAIKKEG 786
+A+GRK +LG++AA+ML QLEP N+ NYVLL N GG+WED+ K R M A +KKE
Sbjct: 801 RANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEA 860
Query: 787 GCSWVTMKDGVHVFVAGDKLYPDKDAIYEKIKELQTKMKDTGYVPQTKFALYDLDPENIE 966
G SWVTMKDGVH+FVAGDK +PD D IY+K+KEL KM+D GYVPQT FALYDL+ EN E
Sbjct: 861 GYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKE 920
Query: 967 ELLSYHSERLAVAFVLT--RKSELPV 1038
E+LSYHSE+LAVAFVL R S LP+
Sbjct: 921 EILSYHSEKLAVAFVLAAQRSSTLPI 946
Score = 42.7 bits (99), Expect(2) = 2e-82
Identities = 21/27 (77%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Frame = +3
Query: 351 MKLHGPLP-DHVTFVGVLSACSHVGLV 428
MKL G P DHVTFVGVLSACSH GL+
Sbjct: 711 MKLDGQTPPDHVTFVGVLSACSHAGLL 737
>gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
Length = 772
Score = 291 bits (744), Expect(2) = 2e-82
Identities = 139/206 (67%), Positives = 165/206 (80%), Gaps = 5/206 (2%)
Frame = +1
Query: 436 FKHFESMNKMYKLTPRMEHYSCMVDLLGHAGEFDKLEDFVNRMPMNPNDLIWRTVLGACC 615
FKHFESM+ Y L PR+EH+SCM DLLG AGE DKLEDF+++MP+ PN LIWRTVLGACC
Sbjct: 461 FKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVLIWRTVLGACC 520
Query: 616 KASGRKNDLGRRAADMLMQLEPHNSANYVLLSNF---GGKWEDMEKTRSAMSKAAIKKEG 786
+A+GRK +LG++AA+ML QLEP N+ NYVLL N GG+WED+ K R M A +KKE
Sbjct: 521 RANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEA 580
Query: 787 GCSWVTMKDGVHVFVAGDKLYPDKDAIYEKIKELQTKMKDTGYVPQTKFALYDLDPENIE 966
G SWVTMKDGVH+FVAGDK +PD D IY+K+KEL KM+D GYVPQT FALYDL+ EN E
Sbjct: 581 GYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKE 640
Query: 967 ELLSYHSERLAVAFVLT--RKSELPV 1038
E+LSYHSE+LAVAFVL R S LP+
Sbjct: 641 EILSYHSEKLAVAFVLAAQRSSTLPI 666
Score = 42.7 bits (99), Expect(2) = 2e-82
Identities = 21/27 (77%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Frame = +3
Query: 351 MKLHGPLP-DHVTFVGVLSACSHVGLV 428
MKL G P DHVTFVGVLSACSH GL+
Sbjct: 431 MKLDGQTPPDHVTFVGVLSACSHAGLL 457
>emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
Length = 1539
Score = 307 bits (787), Expect = 3e-81
Identities = 144/223 (64%), Positives = 185/223 (82%), Gaps = 3/223 (1%)
Frame = +1
Query: 379 MLPLLVSCLHVVM*GWSPTFKHFESMNKMYKLTPRMEHYSCMVDLLGHAGEFDKLEDFVN 558
+L +L +C HV F+HF+SM+++Y+L+PR+EH+SCMVDLLG AG+ D++ DF+N
Sbjct: 1270 LLGVLSACSHVGF--VEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFIN 1327
Query: 559 RMPMNPNDLIWRTVLGACCKASGRKNDLGRRAADMLMQLEPHNSANYVLLSNF---GGKW 729
MPM PN LIWRTVLGACC+A+GR +LGRRAA+ML++LEP N+ NYVLL+N G KW
Sbjct: 1328 SMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKW 1387
Query: 730 EDMEKTRSAMSKAAIKKEGGCSWVTMKDGVHVFVAGDKLYPDKDAIYEKIKELQTKMKDT 909
ED+ K R AM +AA+KKE GCSWVTMKDGVHVFVAGDKL+P+KD IY+K++EL KM+D
Sbjct: 1388 EDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDA 1447
Query: 910 GYVPQTKFALYDLDPENIEELLSYHSERLAVAFVLTRKSELPV 1038
GY+PQTK+AL+DL+ EN EELLSYHSE++AVAFVLTR+S LP+
Sbjct: 1448 GYIPQTKYALFDLELENKEELLSYHSEKIAVAFVLTRQSALPI 1490