BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00012722
         (1419 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   401   e-109
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        392   e-107
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                388   e-105
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     388   e-105
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   382   e-103

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  401 bits (1030), Expect = e-109
 Identities = 212/475 (44%), Positives = 284/475 (59%), Gaps = 5/475 (1%)
 Frame = -3

Query: 1414 SYENLVQTLMLVGDTLTMDETRTSLLADDLRKIATGGMATSGNTEQAQGLFVXXXXXXXX 1235
            S+EN VQ+ ++  DT++++E R++L + +LR  A G    +    Q  GLF         
Sbjct: 152  SFENFVQSFIVGKDTVSLEEVRSALHSRELRHKANG----TSTDIQPSGLFTSSRKGRKN 207

Query: 1234 XXXXXXXXXXXRPPMERKCFKCGESGHFKANCPNKRVIWKKNKNNKDTGKVKEKQEVGYA 1055
                         P +  C  C E GH+K +CP K+             K  EKQ V  A
Sbjct: 208  GGKKNKPMSKGAKP-DDVCNYCKEKGHWKFDCPKKK-------------KQSEKQSVSAA 253

Query: 1054 ----SEGGSDDCFSVSCEG-EITNRWILDSGCSYHMCPNRKWFTTYRSIEGGTILMGNNY 890
                     +D   V+ E    ++ W+LDSG SYH+CP R+WFTTY  ++GG+I M N+ 
Sbjct: 254  VAEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSS 313

Query: 889  SCKMVGLGSIRIRMHDGVVRTLTDVRHVPELKKNLISVGALDSGGCKIVTYNGEMKVVRG 710
             CK+VG GSI+IR HDG   TL +VRHVP + KNLIS+  LDS G      +G ++V +G
Sbjct: 314  VCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKG 373

Query: 709  SLVVMKGVCQGNLYALLXXXXXXXXXXXXXXXXGDPCECTRLWHRRLGHMSEKGLNYLGK 530
            S +++KGV +G LY L                     + T+LWH RLGHM E+G+  L K
Sbjct: 374  SNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQK--DMTKLWHIRLGHMGERGMQILSK 431

Query: 529  EGLLKNMKKACMEFCENCVYGKAHRVQFKSSKHRSRGILDYVHTDVWGPAPVTSKGGARY 350
            E LL   K   +EFCE+CV+GK HR +F  + HR++G LDY+H+D WGP  V S GG R+
Sbjct: 432  EDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRF 491

Query: 349  FVSFVDDYSRYVWVYFMKHKNEVFNTFKRWKTMVENRTGKKLKTLRSDNGTEYTDGAFKE 170
            FVS +DDYSR  WVY MKHK+E F  FK WK ++EN+TGKK+K LR+DNG E+    F +
Sbjct: 492  FVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQ 551

Query: 169  FCDQEGIVRHWTVRKTPQQNGVAERLNRTLREKSMCMRSYAGLGKEWWAESISTA 5
            FC  EGI RH TVR TPQQNGVAER+N+TL E++ CM S AGL + +WAE++STA
Sbjct: 552  FCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTA 606


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  392 bits (1008), Expect = e-107
 Identities = 215/486 (44%), Positives = 289/486 (59%), Gaps = 16/486 (3%)
 Frame = -3

Query: 1414 SYENLVQTLMLVGDTLTMDETRTSLLADDLRKIATGGMATSGNTEQAQGLFVXXXXXXXX 1235
            SY N   T++   DTLT+ E   +L A +  K     + + G+  QA+GL V        
Sbjct: 154  SYANFRDTILYSRDTLTLKEVYDALHAKEKMKKM---VPSEGSNSQAEGLVVRGSQQEKN 210

Query: 1234 XXXXXXXXXXXRPPMERK-------CFKCGESGHFKANCPNKRVIWKKNKNNKDTGKV-- 1082
                             K       C  C   GH  + C      WK    +K TGK   
Sbjct: 211  TNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKC------WKLQDKDKRTGKYIP 264

Query: 1081 -KEKQEVGYAS---EGGSDDCFSVSCEG--EITNRWILDSGCSYHMCPNRKWFTTYRSIE 920
              +K+E G A+   +  SD    V+  G  + +++WILD+ C+YHMCPNR WF TY  ++
Sbjct: 265  KGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQ 324

Query: 919  GGTILMGNNYSCKMVGLGSIRIRMHDGVVRTLTDVRHVPELKKNLISVGALDSGGCKIVT 740
            GGT+LMG++  C++ G+G+++I+M DG +RTL+DVRH+P LK++LIS+  LD  G K   
Sbjct: 325  GGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 384

Query: 739  YNGEMKVVRGSLVVMKG-VCQGNLYALLXXXXXXXXXXXXXXXXGDPCECTRLWHRRLGH 563
             +G +KV +GSLVVMK  +   NLY L                     + T LWH RLGH
Sbjct: 385  GDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNS--DATNLWHMRLGH 442

Query: 562  MSEKGLNYLGKEGLLKNMKKACMEFCENCVYGKAHRVQFKSSKHRSRGILDYVHTDVWGP 383
            MSE GL  L K GLL     + ++FCE+C++GK  RV+F +S H + GILDYVH+D+WGP
Sbjct: 443  MSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGP 502

Query: 382  APVTSKGGARYFVSFVDDYSRYVWVYFMKHKNEVFNTFKRWKTMVENRTGKKLKTLRSDN 203
            A  TS GGARY ++ VDDYSR VW YF+KHK + FN FK WKTMVE +T +K+K LR+DN
Sbjct: 503  ARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDN 562

Query: 202  GTEYTDGAFKEFCDQEGIVRHWTVRKTPQQNGVAERLNRTLREKSMCMRSYAGLGKEWWA 23
            G E+    FK +C  EGIVRH+TV  TPQQNGVAER+NR +  K+ CM S AGL K++WA
Sbjct: 563  GMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWA 622

Query: 22   ESISTA 5
            E++STA
Sbjct: 623  EAVSTA 628


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  388 bits (996), Expect = e-105
 Identities = 212/486 (43%), Positives = 288/486 (59%), Gaps = 16/486 (3%)
 Frame = -3

Query: 1414 SYENLVQTLMLVGDTLTMDETRTSLLADDLRKIATGGMATSGNTEQAQGLFVXXXXXXXX 1235
            SY N   T++   DTLT+ E   +L A +  K     + + G+  QA+GL V        
Sbjct: 139  SYANFRDTILYSRDTLTLKEVYDALHAKEKMKKM---VPSEGSNSQAEGLVVQGSQQEKN 195

Query: 1234 XXXXXXXXXXXRPPMERK-------CFKCGESGHFKANCPNKRVIWKKNKNNKDTGKV-- 1082
                             K       C  C   GH  + C      WK    +K TGK   
Sbjct: 196  TNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKC------WKLQDKDKRTGKYIP 249

Query: 1081 -KEKQEVGYAS---EGGSDDCFSVSCEG--EITNRWILDSGCSYHMCPNRKWFTTYRSIE 920
              +K++ G A+   +  SD    V+  G  + +++WILD+ C+YHMCPNR WF TY  ++
Sbjct: 250  KGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQ 309

Query: 919  GGTILMGNNYSCKMVGLGSIRIRMHDGVVRTLTDVRHVPELKKNLISVGALDSGGCKIVT 740
            GGT+LMG++  C++ G+G+++I+M DG +RTL+DVRH+P LK++LIS+  LD  G K   
Sbjct: 310  GGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSG 369

Query: 739  YNGEMKVVRGSLVVMKG-VCQGNLYALLXXXXXXXXXXXXXXXXGDPCECTRLWHRRLGH 563
             +G +KV +GSLVVMK  +   NLY L                     + T LWH RLGH
Sbjct: 370  GDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNS--DATNLWHMRLGH 427

Query: 562  MSEKGLNYLGKEGLLKNMKKACMEFCENCVYGKAHRVQFKSSKHRSRGILDYVHTDVWGP 383
            MSE GL  L   GLL       ++FCE+C++GK  RV+F +S H + GILDYVH+D+WGP
Sbjct: 428  MSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGP 487

Query: 382  APVTSKGGARYFVSFVDDYSRYVWVYFMKHKNEVFNTFKRWKTMVENRTGKKLKTLRSDN 203
            A  TS GGARY ++ V+DYSR VW YF+KHK + FN FK WKTMVE +T +K+K LR+DN
Sbjct: 488  ARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDN 547

Query: 202  GTEYTDGAFKEFCDQEGIVRHWTVRKTPQQNGVAERLNRTLREKSMCMRSYAGLGKEWWA 23
            G E+    FK +C  EGI+RH+TV  TPQQNGVAER+NRT+  K+ CM S AGL K++WA
Sbjct: 548  GMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWA 607

Query: 22   ESISTA 5
            E++STA
Sbjct: 608  EAVSTA 613


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  388 bits (996), Expect = e-105
 Identities = 211/486 (43%), Positives = 285/486 (58%), Gaps = 16/486 (3%)
 Frame = -3

Query: 1414 SYENLVQTLMLVGDTLTMDETRTSLLADDLRKIATGGMATSGNTEQAQGLFVXXXXXXXX 1235
            SY N   T++   DTLT+ E   +L A +  K     + + G+  QA+GL V        
Sbjct: 63   SYANFRDTILYSRDTLTLKEVYDALHAKEKMKKM---VPSEGSNSQAEGLVVRGRQQEKN 119

Query: 1234 XXXXXXXXXXXRPPMERK-------CFKCGESGHFKANCPNKRVIWKKNKNNKDT----- 1091
                             K       C  C   GH  + C      WK    +K T     
Sbjct: 120  TNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISEC------WKLQDKDKRTRKYIP 173

Query: 1090 -GKVKEKQEVGYASEGGSDDCFSVSCEG--EITNRWILDSGCSYHMCPNRKWFTTYRSIE 920
             GK +E+ +    ++  SD    V+  G  + +++WILD+ C+YHMCPNR WF TY +++
Sbjct: 174  KGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQ 233

Query: 919  GGTILMGNNYSCKMVGLGSIRIRMHDGVVRTLTDVRHVPELKKNLISVGALDSGGCKIVT 740
            GGT+LMG++  C++ G+G+++I+M DG +RTL DVRH+P LK++LIS+  LD  G K   
Sbjct: 234  GGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSG 293

Query: 739  YNGEMKVVRGSLVVMKG-VCQGNLYALLXXXXXXXXXXXXXXXXGDPCECTRLWHRRLGH 563
             +G +KV +GSLVVMK  +   NLY L                     + T LWH RLGH
Sbjct: 294  GDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNS--DATNLWHMRLGH 351

Query: 562  MSEKGLNYLGKEGLLKNMKKACMEFCENCVYGKAHRVQFKSSKHRSRGILDYVHTDVWGP 383
            MSE GL  L K GLL       ++FCE+C++GK  RV+F +S H + GILDYVH+D+WGP
Sbjct: 352  MSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGP 411

Query: 382  APVTSKGGARYFVSFVDDYSRYVWVYFMKHKNEVFNTFKRWKTMVENRTGKKLKTLRSDN 203
            A  TS GGARY ++ VDDYSR VW YF+KHK + F+ FK WKTMVE +T +K+K LR+DN
Sbjct: 412  ARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDN 471

Query: 202  GTEYTDGAFKEFCDQEGIVRHWTVRKTPQQNGVAERLNRTLREKSMCMRSYAGLGKEWWA 23
            G E     FK +C  EGIVRH+TV  TPQQNGVAER+NRT+  K+ CM S A L K++WA
Sbjct: 472  GMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWA 531

Query: 22   ESISTA 5
            E++STA
Sbjct: 532  EAVSTA 537


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  382 bits (981), Expect = e-103
 Identities = 209/487 (42%), Positives = 290/487 (59%), Gaps = 17/487 (3%)
 Frame = -3

Query: 1414 SYENLVQTLMLVGDTLTMDETRTSL-LADDLRKIATGGMATSGNTEQAQGLFVXXXXXXX 1238
            SY N   T++   DTLT+ E   +L + + ++K+    + + G+  QA+GL V       
Sbjct: 361  SYANFRDTILYSRDTLTLKEVYDALHVKEKMKKM----VPSEGSNSQAEGLIVWGRQQEK 416

Query: 1237 XXXXXXXXXXXXRPPMERK-------CFKCGESGHFKANCPNKRVIWKKNKNNKDTGKVK 1079
                              K       C  C   GH    C      WK +  +K TGK  
Sbjct: 417  NTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFEC------WKLHDKDKRTGKYV 470

Query: 1078 ---EKQEVGYAS---EGGSDDCFSVSCEG--EITNRWILDSGCSYHMCPNRKWFTTYRSI 923
               +K+E G A+   +  SD    V+  G  + +++WIL++ C YHMCPNR WF TY ++
Sbjct: 471  PKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAV 530

Query: 922  EGGTILMGNNYSCKMVGLGSIRIRMHDGVVRTLTDVRHVPELKKNLISVGALDSGGCKIV 743
            + GT+LMG++  C++ G+G+++I+M DG +RTL+DVRH+P LK++LIS+  LD  G K  
Sbjct: 531  QVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYS 590

Query: 742  TYNGEMKVVRGSLVVMKG-VCQGNLYALLXXXXXXXXXXXXXXXXGDPCECTRLWHRRLG 566
              +G +KV +GSLVVMK  +   NLY L                     + T LWH RLG
Sbjct: 591  GGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNS--DATNLWHMRLG 648

Query: 565  HMSEKGLNYLGKEGLLKNMKKACMEFCENCVYGKAHRVQFKSSKHRSRGILDYVHTDVWG 386
            HM+E GL  L K GLL       ++FCE+C++GK  RV+F +S H + GILDYVH+D+WG
Sbjct: 649  HMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWG 708

Query: 385  PAPVTSKGGARYFVSFVDDYSRYVWVYFMKHKNEVFNTFKRWKTMVENRTGKKLKTLRSD 206
            PA  TS GG RY ++ VDDYSR VW YF+KHK + F+ FK WKTMVE +T +K+K LR+D
Sbjct: 709  PARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTD 768

Query: 205  NGTEYTDGAFKEFCDQEGIVRHWTVRKTPQQNGVAERLNRTLREKSMCMRSYAGLGKEWW 26
            NG E+    FK +C  EGIVRH+TV  TPQQNGVAER+NRT+  K+ C+ S AGL K++W
Sbjct: 769  NGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFW 828

Query: 25   AESISTA 5
            AE++STA
Sbjct: 829  AEAVSTA 835