BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00012472
         (2641 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1124   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1094   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1089   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1087   0.0  
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...  1078   0.0  

>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1124 bits (2908), Expect = 0.0
 Identities = 570/823 (69%), Positives = 653/823 (79%), Gaps = 10/823 (1%)
 Frame = +2

Query: 8    FYQLLNPHRGVNIAFTEHALEKLNNIKECCYDPVKWFIEQYMTYSTSRRRSAPPAISLDA 187
            F++L++P R   I+F EHALEKL ++KECCY+PV+W  EQY TY   +  +  PAISLD 
Sbjct: 296  FFRLVDPER-FPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY-VKKPVAGSPAISLDT 353

Query: 188  GLVYVYRVQITPSRVFFCGPEVNVSNRVLRKFSTEIDNFLRVSFVDEEINKLFSTDVCVR 367
            GLVYV RVQITP +V+FCGPEVNVSNRVLR +  +IDNFLRVSF+DE + K+ ST +  R
Sbjct: 354  GLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPR 413

Query: 368  NEK----TGIYKRILSILQNGIIINNKKFEFLAFSSSQLRDNSAWMFASTEKLSASDIRK 535
              K    TG+Y+RILSILQNGI+I +KKF+FLAFSSSQLRDNSAWMFAS   L+A++IR 
Sbjct: 414  MSKEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRS 473

Query: 536  WMGDFHTIRNVAKYAARLGQSFSSSTETLTVPENEIETIPDV---KNGTRYIFSDGIGKI 706
            WMGDF  IRNVAKYAARLGQSFSSS ETL V ++EIE IPD+   K  T Y+FSDGIGKI
Sbjct: 474  WMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKI 533

Query: 707  SADFASKVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSSWKLSLRDSMHKYASSNIGLD 886
            S   A +VAIKCG KSSTPSAFQIRYGGYKGVVAVDPTSS KLSLR SM KY S N  LD
Sbjct: 534  SPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLD 593

Query: 887  VLAWSKYQPCYLNRQVISLLSTLGVKDTVFEKKQREAVVQLDMILEDPSRAQEALDLMCR 1066
            VLAWSKYQP +LNRQ+I+LLSTLGVKD VFEKKQR AV QLD IL+DP  AQEAL+LM  
Sbjct: 594  VLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSP 653

Query: 1067 GENANILKEMLKCGYKPSAEPFLSMMLQTFRASKLLXXXXXXXXXXXXXXXXXXXXXXXX 1246
            GEN N+LKEML CGYKP AEPFLSMMLQTFRA+KLL                        
Sbjct: 654  GENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETR 713

Query: 1247 XXX--QVFVQYSGYERRAFYDDSLMIYSDDGLNHRKSIAEGKVIVAKNPCLHPGDIRVLT 1420
                 +VFVQ SG   R  + DSLM +   G +H   I EGK++VAKNPCLHPGD+RVL 
Sbjct: 714  TLEYGEVFVQISGTGGRQSFGDSLM-FRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLW 772

Query: 1421 AVNVPALHHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDHDLLPPQCSQPMDYSPA 1600
            AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD DL+PPQ   PMDY+PA
Sbjct: 773  AVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPA 832

Query: 1601 DTLKLDHEVTIEEVQEYFTNYIVNDSLGIIANAHTVFADREISKAMSKPCVELANLFSVA 1780
             T  LDH+V IEEV+EYFTNYIVNDSLGIIANAHTVFAD+E  KA   PC ELA LFS+A
Sbjct: 833  PTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIA 892

Query: 1781 VDFPKTGVPAEIPSHLRVTEYPDFMEKSDKSTYVSEGVLGKLYRDVKKIAPNINSIESFT 1960
            VDFPKTGVPAEIP +LRV EYPDFMEK+DK TY S+ V+GKL+R+VK IAP+  +I SFT
Sbjct: 893  VDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFT 952

Query: 1961 KEVARQSYDRDMEVVGFRDYLDDAFEYKSTYDFQLGNLMDYYGIKTEAEILSGNIMKMSK 2140
            ++VARQSYD DMEVVGF DY+ DAF YKS YD++LGNLMDYYGIKTE+EILSG+IM+MSK
Sbjct: 953  RDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSK 1012

Query: 2141 SFDRRKDAEAITLAVKSLRKNARTWFNKKHGPSDVGMESIYAKASAWYHVTYHPDYWGKY 2320
            SFDRRKDAEAI LAVKSLRK ARTWFNK    +D   + +YAKASAWYHVTYHPDYWG Y
Sbjct: 1013 SFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCY 1072

Query: 2321 NVGLDRPHFLSFPWCIYDKLIHIKKEELS-RTAYITDLMKRLN 2446
            N G+DR HFLSFPWC+YDKLIH K++++S R+ +++ L +RL+
Sbjct: 1073 NEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLS 1115


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1094 bits (2829), Expect = 0.0
 Identities = 541/805 (67%), Positives = 635/805 (78%), Gaps = 5/805 (0%)
 Frame = +2

Query: 2    DRFYQLLNPHRGVNIAFTEHALEKLNNIKECCYDPVKWFIEQYMTYSTSRRRSAPPAISL 181
            D FY+L++P R ++  + +HALEKL  ++ECCY+P +W  E+Y  +S SR+    P ISL
Sbjct: 301  DTFYRLVDPCR-MHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISL 359

Query: 182  DAGLVYVYRVQITPSRVFFCGPEVNVSNRVLRKFSTEIDNFLRVSFVDEEINKLFSTDVC 361
            D GLVYV RVQITPSRV+FCGPE+NVSNRVLR+F  +IDNFLR+SFVDEE+ K+ ST+V 
Sbjct: 360  DEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQ 419

Query: 362  VRNEKTGIYKRILSILQNGIIINNKKFEFLAFSSSQLRDNSAWMFASTEKLSASDIRKWM 541
             R  +TGIYKRILS L+NGI+I NK+FEFLAFSSSQLR+NSAWMFAS + L+A+DIR WM
Sbjct: 420  ARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWM 479

Query: 542  GDFHTIRNVAKYAARLGQSFSSSTETLTVPENEIETIPDV---KNGTRYIFSDGIGKISA 712
            G+F  IRNVAKYAARLGQSFSSSTETL+V ++EI  IPD+   K+G +Y+FSDGIGKISA
Sbjct: 480  GNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISA 539

Query: 713  DFASKVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSSWKLSLRDSMHKYASSNIGLDVL 892
            +FA KVA KC LK  TPSAFQIR GG+KGVVA+DPTSSWKLSLR SM KY S N  LDVL
Sbjct: 540  EFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVL 599

Query: 893  AWSKYQPCYLNRQVISLLSTLGVKDTVFEKKQREAVVQLDMILEDPSRAQEALDLMCRGE 1072
            AWSKYQPC+LNRQ+I+LLSTLGV D  FEKKQRE V QL+ +L DP  AQEAL+LM  GE
Sbjct: 600  AWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGE 659

Query: 1073 NANILKEMLKCGYKPSAEPFLSMMLQTFRASKLLXXXXXXXXXXXXXXXXXXXXXXXXXX 1252
            N NILKEML CGYKP AEPFLSMML+TFRASKLL                          
Sbjct: 660  NTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTL 719

Query: 1253 X--QVFVQYSGYERRAFYDDSLMIYSDDGLNHRKSIAEGKVIVAKNPCLHPGDIRVLTAV 1426
               QVFVQ+SG                   + R+ I +GKVIVAKNPCLHPGD+RVL AV
Sbjct: 720  NYGQVFVQFSGSR-----------------SERRFIVQGKVIVAKNPCLHPGDVRVLRAV 762

Query: 1427 NVPALHHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDHDLLPPQCSQPMDYSPADT 1606
            NVP LHHMVDCVVFPQKGTRPHPNECSGSDLDGD+YFVCWD +L+P +   PMDYSPA T
Sbjct: 763  NVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPAST 822

Query: 1607 LKLDHEVTIEEVQEYFTNYIVNDSLGIIANAHTVFADREISKAMSKPCVELANLFSVAVD 1786
             KLDHEVTIEE++EYFTNYIVNDSLGII+NAHT FADRE  KAMS+PC+ELA LFS+AVD
Sbjct: 823  TKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVD 882

Query: 1787 FPKTGVPAEIPSHLRVTEYPDFMEKSDKSTYVSEGVLGKLYRDVKKIAPNINSIESFTKE 1966
            FPKTGVPAEIP  LRV EYPDFMEK DK +Y S  V+GKL+R+VK +APN  SI+  T+E
Sbjct: 883  FPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTRE 942

Query: 1967 VARQSYDRDMEVVGFRDYLDDAFEYKSTYDFQLGNLMDYYGIKTEAEILSGNIMKMSKSF 2146
              ++ YD DMEV GF DY+DDAF +KS YD++LGNLMDYYG+KTEAEIL G IMKMS+SF
Sbjct: 943  KMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSF 1002

Query: 2147 DRRKDAEAITLAVKSLRKNARTWFNKKHGPSDVGMESIYAKASAWYHVTYHPDYWGKYNV 2326
             +++DAEAI++AV+SLRK AR+WFN+K    D  ++  YAKASAWY+VTYHP YWG+YN 
Sbjct: 1003 TKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNE 1062

Query: 2327 GLDRPHFLSFPWCIYDKLIHIKKEE 2401
            G++R HFLSFPWC+YDKLI IKKE+
Sbjct: 1063 GMNRDHFLSFPWCVYDKLIQIKKEK 1087


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1089 bits (2816), Expect = 0.0
 Identities = 549/809 (67%), Positives = 641/809 (79%), Gaps = 9/809 (1%)
 Frame = +2

Query: 8    FYQLLNPHRGVNIAFTEHALEKLNNIKECCYDPVKWFIEQYMTYSTSRRRSAPPAISLDA 187
            F++ ++P R +NI+F EHALEKL  ++ECCY+PV+W  EQY TY  S++ +  PAISLD 
Sbjct: 294  FFRWVDPQR-INISFIEHALEKLYYLEECCYEPVRWLHEQYRTY-ISKQVAGSPAISLDT 351

Query: 188  GLVYVYRVQITPSRVFFCGPEVNVSNRVLRKFSTEIDNFLRVSFVDEEINKLFSTDVCVR 367
            GLVYV RVQITP +V+FCGPEVNVSNRVLR +  +IDNFLRVSF+DE   K+ ST +  R
Sbjct: 352  GLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPR 411

Query: 368  ----NEKTGIYKRILSILQNGIIINNKKFEFLAFSSSQLRDNSAWMFASTEKLSASDIRK 535
                  +TG+Y+RILSILQNGI+I +KKF+FLA SSSQLRDNSAWMFAS   L+A+DIR 
Sbjct: 412  MSNEGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRS 471

Query: 536  WMGDFHTIRNVAKYAARLGQSFSSSTETLTVPENEIETIPDV---KNGTRYIFSDGIGKI 706
             MGDF  IRNVAKYAARLGQSFSSS ETL V ++EIE IPD+   ++GT Y+FSDGIGKI
Sbjct: 472  RMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKI 531

Query: 707  SADFASKVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSSWKLSLRDSMHKYASSNIGLD 886
            SA+ A +VAIKCG K+STPSAFQIRYGGYKGVVAVDPTSS KLSLR SM KY S N  LD
Sbjct: 532  SAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLD 591

Query: 887  VLAWSKYQPCYLNRQVISLLSTLGVKDTVFEKKQREAVVQLDMILEDPSRAQEALDLMCR 1066
            VL+WSKY+PC+LNRQ+I+LLSTLGVKD VFEKKQREAV QLD IL+DP RAQEAL+LM  
Sbjct: 592  VLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSP 651

Query: 1067 GENANILKEMLKCGYKPSAEPFLSMMLQTFRASKLLXXXXXXXXXXXXXXXXXXXXXXXX 1246
            GEN NILKEML CGYKP AEPFLSMMLQTFRA+KLL                        
Sbjct: 652  GENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETR 711

Query: 1247 XXX--QVFVQYSGYERRAFYDDSLMIYSDDGLNHRKSIAEGKVIVAKNPCLHPGDIRVLT 1420
                 +VFVQ SG   R  + DSLM Y   G +H   I EGKV+VAKNPCLHPGD+R+L+
Sbjct: 712  TLEYGEVFVQISGTGGRQSFGDSLMFYGS-GSHHDNFILEGKVVVAKNPCLHPGDVRILS 770

Query: 1421 AVNVPALHHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDHDLLPPQCSQPMDYSPA 1600
            AV+VPALHHMVDCVVFPQKG RPHP+ECSGSDLDGDIYFVCWDHDL+PP+   PMDY+PA
Sbjct: 771  AVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPA 830

Query: 1601 DTLKLDHEVTIEEVQEYFTNYIVNDSLGIIANAHTVFADREISKAMSKPCVELANLFSVA 1780
             T  LDH+V IEEV+EYFTNYI ND LGIIANAHTVFAD+E  KA+  PC ELA LFS+A
Sbjct: 831  PTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIA 890

Query: 1781 VDFPKTGVPAEIPSHLRVTEYPDFMEKSDKSTYVSEGVLGKLYRDVKKIAPNINSIESFT 1960
            ++FPKTGVPAEIP HL V EYPDFMEK++K TY S+ V+GKL+R+VK +AP+   + SFT
Sbjct: 891  LEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFT 950

Query: 1961 KEVARQSYDRDMEVVGFRDYLDDAFEYKSTYDFQLGNLMDYYGIKTEAEILSGNIMKMSK 2140
            ++VA QSYD DMEV GF DY+ DAF YKS YDF+LG+LMD  GI+TE+EILSG+IMKMSK
Sbjct: 951  RDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSK 1010

Query: 2141 SFDRRKDAEAITLAVKSLRKNARTWFNKKHGPSDVGMESIYAKASAWYHVTYHPDYWGKY 2320
            SFD+RKDAEAI LAV+SLRK ARTWFNK    +  G + +YA ASAWYHVTYHP YWG Y
Sbjct: 1011 SFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCY 1070

Query: 2321 NVGLDRPHFLSFPWCIYDKLIHIKKEELS 2407
            N G+   HFLSFPWC+YDKLI IK++++S
Sbjct: 1071 NEGMYHDHFLSFPWCVYDKLIQIKRDKMS 1099


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1087 bits (2812), Expect = 0.0
 Identities = 539/805 (66%), Positives = 634/805 (78%), Gaps = 5/805 (0%)
 Frame = +2

Query: 2    DRFYQLLNPHRGVNIAFTEHALEKLNNIKECCYDPVKWFIEQYMTYSTSRRRSAPPAISL 181
            D FY+L++P R ++  + +HALEKL  ++ECCY+P +W  E+Y  +S SR+    P ISL
Sbjct: 301  DTFYRLVDPCR-MHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISL 359

Query: 182  DAGLVYVYRVQITPSRVFFCGPEVNVSNRVLRKFSTEIDNFLRVSFVDEEINKLFSTDVC 361
            D GLVYV RVQITPSRV+FCGPE+NVSNRVLR+F  +IDNFLR+SFVDEE+ K+ ST+V 
Sbjct: 360  DEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQ 419

Query: 362  VRNEKTGIYKRILSILQNGIIINNKKFEFLAFSSSQLRDNSAWMFASTEKLSASDIRKWM 541
             R  +TGIYKRILS L+NGI+I NK+FEFLAFSSSQLR+NSAWMFAS + L+A+DIR WM
Sbjct: 420  ARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWM 479

Query: 542  GDFHTIRNVAKYAARLGQSFSSSTETLTVPENEIETIPDV---KNGTRYIFSDGIGKISA 712
            G+F  IRNVAKYAARLGQSFSSSTETL+V ++EI  IPD+   K+G +Y+F DGIGKISA
Sbjct: 480  GNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISA 539

Query: 713  DFASKVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSSWKLSLRDSMHKYASSNIGLDVL 892
            +FA KVA KC LK  TPSAFQIR GG+KGVVA+DPTSSWKLSLR SM KY S N  LDVL
Sbjct: 540  EFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVL 599

Query: 893  AWSKYQPCYLNRQVISLLSTLGVKDTVFEKKQREAVVQLDMILEDPSRAQEALDLMCRGE 1072
            AWSKYQPC+LNRQ+I+LLSTLGV D  FEKKQRE V QL+ +L DP  AQEAL+LM  GE
Sbjct: 600  AWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGE 659

Query: 1073 NANILKEMLKCGYKPSAEPFLSMMLQTFRASKLLXXXXXXXXXXXXXXXXXXXXXXXXXX 1252
            N NILKEML CGYKP AEPFLSMML+TFRASKLL                          
Sbjct: 660  NTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTL 719

Query: 1253 X--QVFVQYSGYERRAFYDDSLMIYSDDGLNHRKSIAEGKVIVAKNPCLHPGDIRVLTAV 1426
               QVFVQ+SG                   + R+ I +GKVIVAKNPCLHPGD+RVL AV
Sbjct: 720  NYGQVFVQFSGSR-----------------SERRFIVQGKVIVAKNPCLHPGDVRVLRAV 762

Query: 1427 NVPALHHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDHDLLPPQCSQPMDYSPADT 1606
            NVP LHHMVDCVVFPQKGTRPHPNECSGSDLDGD+YFVCWD +L+P +   PMDYSPA T
Sbjct: 763  NVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPAST 822

Query: 1607 LKLDHEVTIEEVQEYFTNYIVNDSLGIIANAHTVFADREISKAMSKPCVELANLFSVAVD 1786
             KLDHEVTIEE++EYFTNYIVNDSLGII+NAHT FADRE  KAMS+PC+ELA LFS+AVD
Sbjct: 823  TKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVD 882

Query: 1787 FPKTGVPAEIPSHLRVTEYPDFMEKSDKSTYVSEGVLGKLYRDVKKIAPNINSIESFTKE 1966
            FPKTGVPAEIP  LRV E+PDFMEK DK +Y S  V+GKL+R+VK +APN  SI+  T+E
Sbjct: 883  FPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTRE 942

Query: 1967 VARQSYDRDMEVVGFRDYLDDAFEYKSTYDFQLGNLMDYYGIKTEAEILSGNIMKMSKSF 2146
              ++ YD DMEV GF DY+DDAF YKS YD++LGNLMDYYG+KTEAEILSG IMKMS+SF
Sbjct: 943  KMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSF 1002

Query: 2147 DRRKDAEAITLAVKSLRKNARTWFNKKHGPSDVGMESIYAKASAWYHVTYHPDYWGKYNV 2326
             +++DAE+I++AV+SLRK AR+WFN+K    D  ++  YAKASAWY+VTYH  YWG+YN 
Sbjct: 1003 TKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNE 1062

Query: 2327 GLDRPHFLSFPWCIYDKLIHIKKEE 2401
            G++R HFLSFPWC+YDKLI IKKE+
Sbjct: 1063 GMNRDHFLSFPWCVYDKLIQIKKEK 1087


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score = 1078 bits (2789), Expect = 0.0
 Identities = 549/814 (67%), Positives = 635/814 (78%), Gaps = 11/814 (1%)
 Frame = +2

Query: 2    DRFYQLLNPHRGVNIAFTEHALEKLNNIKECCYDPVKWFIEQYMTYSTSRRRSAPPAISL 181
            D FY+L++P+R + +   E+ALEKL ++KECCY+P KWF EQY  Y TS      P +SL
Sbjct: 302  DIFYRLVDPNR-MPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSL 360

Query: 182  DAGLVYVYRVQITPSRVFFCGPEVNVSNRVLRKFSTEIDNFLRVSFVDEEINKLFSTDVC 361
            DAGLVYVY+VQITP +VFFCGPEVNVSNRVLR++  +IDNFLRVSFVDEE+ K+ STDV 
Sbjct: 361  DAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVS 420

Query: 362  VRNE------KTGIYKRILSILQNGIIINNKKFEFLAFSSSQLRDNSAWMFASTEKLSAS 523
             R        +T IY RILS LQNGI+I +KKFEFLAFSSSQLR+NS WMFAS   L+A+
Sbjct: 421  PRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAA 480

Query: 524  DIRKWMGDFHTIRNVAKYAARLGQSFSSSTETLTVPENEIETIPDV---KNGTRYIFSDG 694
            DIR WMG FH IRNVA+YAARLGQSF SSTETL+V  +EIE IPD+   + GTRY+FSDG
Sbjct: 481  DIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDG 540

Query: 695  IGKISADFASKVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSSWKLSLRDSMHKYASSN 874
            IGKISA+FA KVAIKCG K  TPSAFQIRY GYKGVVAVDPTSS KLSLR SM KY S N
Sbjct: 541  IGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESEN 600

Query: 875  IGLDVLAWSKYQPCYLNRQVISLLSTLGVKDTVFEKKQREAVVQLDMILEDPSRAQEALD 1054
              LDVLA SKYQPC+LNRQ+I+LLSTLGV D  FE+KQREAV QLD +L DP RAQEAL+
Sbjct: 601  TKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALE 660

Query: 1055 LMCRGENANILKEMLKCGYKPSAEPFLSMMLQTFRASKLLXXXXXXXXXXXXXXXXXXXX 1234
            LM  GEN NILKEML CGY+P AEPFLSMMLQTFRASKLL                    
Sbjct: 661  LMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 720

Query: 1235 XXXXXXX--QVFVQYSGYERRAFYDDSLMIYSDDGLNHRKSIAEGKVIVAKNPCLHPGDI 1408
                     QVFV++SG   R  YD S M +S+ G      I +G V+VAKNPCLHPGD+
Sbjct: 721  DETRTLEHGQVFVKFSGSRFRNLYDSSDM-FSERGRGQCYLI-KGSVVVAKNPCLHPGDL 778

Query: 1409 RVLTAVNVPALHHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDHDLLPPQCSQPMD 1588
            R+L AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +L+P Q   PMD
Sbjct: 779  RILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMD 838

Query: 1589 YSPADTLKLDHEVTIEEVQEYFTNYIVNDSLGIIANAHTVFADREISKAMSKPCVELANL 1768
            Y+P   L+LDH+VTIEEV+EYFTNYIVNDSLG+IANAHT  AD+E  KAMS+PCVELA  
Sbjct: 839  YTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARK 898

Query: 1769 FSVAVDFPKTGVPAEIPSHLRVTEYPDFMEKSDKSTYVSEGVLGKLYRDVKKIAPNINSI 1948
            FS+AVDFPKTGVPAEIPS+LR  EYPDFMEK DK +Y S  V+GKL+R+VK IAP  +SI
Sbjct: 899  FSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSI 958

Query: 1949 ESFTKEVARQSYDRDMEVVGFRDYLDDAFEYKSTYDFQLGNLMDYYGIKTEAEILSGNIM 2128
             SFT +VARQ YD DMEV GF DY+DDAF YKS YD++LGNLM+YYGIKTEAE+LSG+ M
Sbjct: 959  RSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFM 1018

Query: 2129 KMSKSFDRRKDAEAITLAVKSLRKNARTWFNKKHGPSDVGMESIYAKASAWYHVTYHPDY 2308
            KMSKSF +++DAEAI +AV+SL+K AR+WFN+K    D   + + AKASAWYHVTYH +Y
Sbjct: 1019 KMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNY 1078

Query: 2309 WGKYNVGLDRPHFLSFPWCIYDKLIHIKKEELSR 2410
            WG YN G++R HFLSFPWC+YDKLI IK+   +R
Sbjct: 1079 WGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSAR 1112