BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00012381
         (1602 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   723   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              720   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   720   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   707   0.0  
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   684   0.0  

>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  723 bits (1867), Expect = 0.0
 Identities = 346/538 (64%), Positives = 429/538 (79%), Gaps = 5/538 (0%)
 Frame = +3

Query: 3    KVYTEKVLRSDR----EDRYIEKVGCEESSTELVLGQFPVMVKSDLCWMNGVDKGDCDFD 170
            +VYT+K++RSD+     DR+++K    E   ++++G+ PVMV S+LCWMNGVDK DC+FD
Sbjct: 176  QVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFD 235

Query: 171  HGGYFIINGAEKVFVAQEQSCLKRLWLSCTPTWKASYRHASIRKRVHVKIADTSKTKQTE 350
            HGGYFI  GAEK F+AQEQ CLKRLW+S  PTW   YR    RKRV++K+ +T K +  +
Sbjct: 236  HGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIK 295

Query: 351  GS-KVLNVFFLTEMPVWILFFALGVSSDKELVNLIDADADDCGIRNILWASMREADKLCK 527
            G  K L+V+ L EMP+W+LFFALGVSSD+E+VNLID D +D  I NIL AS+ EADK C+
Sbjct: 296  GGEKALSVYILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCE 355

Query: 528  DFRKGGKALSYVEKQLKTCEYPPEESVEESIATLLFPKLIGTKQKAHFLAYMVKSLLKAY 707
            DFRKG KAL+YV++ +K C++PP+ESVEE I   LFP L G KQKA FL YMVK LL ++
Sbjct: 356  DFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSF 415

Query: 708  TGRRKLDCRDDLRNKRLELASELLDRELRVHINHARRKMIKHLQRDLDGDRALNRIAQYI 887
             GRRK+D RDD RNKRLELA ELL+RELR HI HA R+M+K +QRDL GDR +  I  Y+
Sbjct: 416  IGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYL 475

Query: 888  DPSIVTNGLSRAFSTGAWSHPFKRGEKISGVVANLSRTNPLQTISEMRRTRQRVEYTGNI 1067
            D SI+TNGLSRAFSTG W HP+KR E++SGVVA L RTNPLQ  ++MR++RQ+V YTG +
Sbjct: 476  DASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKV 535

Query: 1068 GGARYPHPSHWGKICFISTPDGEHCGLIKNLASTGLVSTNVTEPFIDKLLDCGMEELVDD 1247
            G ARYPHPSHWGK+CF+STPDGE+CGL+KNLAS GLVST + +PF++ L  CGM++LVDD
Sbjct: 536  GDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVDD 595

Query: 1248 TSTSLDGKKYIFLDGELVGVCQDSASFVAKLRSMRRRKELPNQVEIKRDEKQGEVRIFCD 1427
             STSL GK+ + LDGE VGVC+DSA FV+KLR  RRR E+P+QVE+KRDE QGEVRIF D
Sbjct: 596  CSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSD 655

Query: 1428 AGRVLRPLLVVRNIKKIKLIESGNYDFQSLLDNGVIELIGAEEEEDCRTAWGTEYLMK 1601
             GR+LRPLLVV N+KKIK ++ G+Y FQSLLDNG+IELIG EEEEDCRTAWG EY++K
Sbjct: 656  PGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILK 713


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  720 bits (1859), Expect = 0.0
 Identities = 346/543 (63%), Positives = 430/543 (79%), Gaps = 10/543 (1%)
 Frame = +3

Query: 3    KVYTEKVLRSDR-----EDRYIEKVGCEESSTELVLGQFPVMVKSDLCWMNGVDKGDCDF 167
            +VYT+K++RSD+     +++Y+EK    E + ++++G+ PVMVKS+LCWMNGV++GDC++
Sbjct: 194  QVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEY 253

Query: 168  DHGGYFIINGAEKVFVAQEQSCLKRLWLSCTPTWKASYRHASIRKRVHVKIADTSKTKQT 347
            DHGGYF+I GAEK F+AQEQ CLKRLW+S  PTW  +YR    RKRV+VK+         
Sbjct: 254  DHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNR 313

Query: 348  EGSKVLNVFFL-TEMPVWILFFALGVSSDKELVNLIDADADDCGIRNILWASMREADKLC 524
             G KVL V+F  TE+P+WILFFALG SSDKE+V+LID + DD GI NIL AS+ EAD+  
Sbjct: 314  GGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREA 373

Query: 525  KD----FRKGGKALSYVEKQLKTCEYPPEESVEESIATLLFPKLIGTKQKAHFLAYMVKS 692
            +     FR+ G A+S+V+K +K+C++PP ES++E I+  LFP   G KQKA FL YMVK 
Sbjct: 374  EKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKC 433

Query: 693  LLKAYTGRRKLDCRDDLRNKRLELASELLDRELRVHINHARRKMIKHLQRDLDGDRALNR 872
            LL+AYTGRRK D RDD RNKRLELA ELL+RELRVHI HA R+M+K +QR+L GDR L  
Sbjct: 434  LLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRP 493

Query: 873  IAQYIDPSIVTNGLSRAFSTGAWSHPFKRGEKISGVVANLSRTNPLQTISEMRRTRQRVE 1052
            I  Y+D SI+TNGLSRAFSTG WSHPFKR E+ISGVVA L RTNPLQ  ++MR+TRQ+V+
Sbjct: 494  IENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQ 553

Query: 1053 YTGNIGGARYPHPSHWGKICFISTPDGEHCGLIKNLASTGLVSTNVTEPFIDKLLDCGME 1232
            YTG +G ARYPHPSHWGK+CF+STPDGE+CGL+KNLA TGLVST V +P +DKL DCGME
Sbjct: 554  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGME 613

Query: 1233 ELVDDTSTSLDGKKYIFLDGELVGVCQDSASFVAKLRSMRRRKELPNQVEIKRDEKQGEV 1412
            +LVDDTST L GK  +FLDG+ VGVC+D  SFV +LR+ RR KELP QVEIKRDE+QGEV
Sbjct: 614  KLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEV 673

Query: 1413 RIFCDAGRVLRPLLVVRNIKKIKLIESGNYDFQSLLDNGVIELIGAEEEEDCRTAWGTEY 1592
            RIF DAGR+LRPLLVV N+KK+K  +  ++ FQSLLD G++ELIGAEEEEDC TAWG +Y
Sbjct: 674  RIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKY 733

Query: 1593 LMK 1601
            L+K
Sbjct: 734  LLK 736


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  720 bits (1859), Expect = 0.0
 Identities = 346/543 (63%), Positives = 430/543 (79%), Gaps = 10/543 (1%)
 Frame = +3

Query: 3    KVYTEKVLRSDR-----EDRYIEKVGCEESSTELVLGQFPVMVKSDLCWMNGVDKGDCDF 167
            +VYT+K++RSD+     +++Y+EK    E + ++++G+ PVMVKS+LCWMNGV++GDC++
Sbjct: 158  QVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEY 217

Query: 168  DHGGYFIINGAEKVFVAQEQSCLKRLWLSCTPTWKASYRHASIRKRVHVKIADTSKTKQT 347
            DHGGYF+I GAEK F+AQEQ CLKRLW+S  PTW  +YR    RKRV+VK+         
Sbjct: 218  DHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNR 277

Query: 348  EGSKVLNVFFL-TEMPVWILFFALGVSSDKELVNLIDADADDCGIRNILWASMREADKLC 524
             G KVL V+F  TE+P+WILFFALG SSDKE+V+LID + DD GI NIL AS+ EAD+  
Sbjct: 278  GGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREA 337

Query: 525  KD----FRKGGKALSYVEKQLKTCEYPPEESVEESIATLLFPKLIGTKQKAHFLAYMVKS 692
            +     FR+ G A+S+V+K +K+C++PP ES++E I+  LFP   G KQKA FL YMVK 
Sbjct: 338  EKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKC 397

Query: 693  LLKAYTGRRKLDCRDDLRNKRLELASELLDRELRVHINHARRKMIKHLQRDLDGDRALNR 872
            LL+AYTGRRK D RDD RNKRLELA ELL+RELRVHI HA R+M+K +QR+L GDR L  
Sbjct: 398  LLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRP 457

Query: 873  IAQYIDPSIVTNGLSRAFSTGAWSHPFKRGEKISGVVANLSRTNPLQTISEMRRTRQRVE 1052
            I  Y+D SI+TNGLSRAFSTG WSHPFKR E+ISGVVA L RTNPLQ  ++MR+TRQ+V+
Sbjct: 458  IENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQ 517

Query: 1053 YTGNIGGARYPHPSHWGKICFISTPDGEHCGLIKNLASTGLVSTNVTEPFIDKLLDCGME 1232
            YTG +G ARYPHPSHWGK+CF+STPDGE+CGL+KNLA TGLVST V +P +DKL DCGME
Sbjct: 518  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGME 577

Query: 1233 ELVDDTSTSLDGKKYIFLDGELVGVCQDSASFVAKLRSMRRRKELPNQVEIKRDEKQGEV 1412
            +LVDDTST L GK  +FLDG+ VGVC+D  SFV +LR+ RR KELP QVEIKRDE+QGEV
Sbjct: 578  KLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEV 637

Query: 1413 RIFCDAGRVLRPLLVVRNIKKIKLIESGNYDFQSLLDNGVIELIGAEEEEDCRTAWGTEY 1592
            RIF DAGR+LRPLLVV N+KK+K  +  ++ FQSLLD G++ELIGAEEEEDC TAWG +Y
Sbjct: 638  RIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKY 697

Query: 1593 LMK 1601
            L+K
Sbjct: 698  LLK 700


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  707 bits (1826), Expect = 0.0
 Identities = 336/518 (64%), Positives = 415/518 (80%), Gaps = 1/518 (0%)
 Frame = +3

Query: 45   RYIEKVGCEESSTELVLGQFPVMVKSDLCWMNGVDKGDCDFDHGGYFIINGAEKVFVAQE 224
            +Y++K    E + ++++G+ PVM+KSDLCWMNGV+K DCDFDHGGYF+I GAEK F+AQE
Sbjct: 1    QYVDKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQE 60

Query: 225  QSCLKRLWLSCTPTWKASYRHASIRKRVHVKIADTSKTKQTEGSKVLNVFF-LTEMPVWI 401
            Q CLKRLW+S +P+W  +YR  S RKRV++K+    +     G KVL+V+F   E P+WI
Sbjct: 61   QICLKRLWVSNSPSWTVAYRDVSKRKRVYIKLEPPKREHIRGGEKVLSVYFSAVEFPIWI 120

Query: 402  LFFALGVSSDKELVNLIDADADDCGIRNILWASMREADKLCKDFRKGGKALSYVEKQLKT 581
            LFFALG SSDKE+VNLID D +D  I N+L AS+ +AD+ CK FR+G  A++ + K+++ 
Sbjct: 121  LFFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIEN 180

Query: 582  CEYPPEESVEESIATLLFPKLIGTKQKAHFLAYMVKSLLKAYTGRRKLDCRDDLRNKRLE 761
            C++PP+ES+E  ++  LFP L G +QKA FL YMVK LL+AYTGRRK+D RDD RNKRLE
Sbjct: 181  CKFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLE 240

Query: 762  LASELLDRELRVHINHARRKMIKHLQRDLDGDRALNRIAQYIDPSIVTNGLSRAFSTGAW 941
            LA ELL+RELRVH+ HA R+M+K +QRDL G+R ++ I  Y+D SI+TNGLSRAFSTGAW
Sbjct: 241  LAGELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAW 300

Query: 942  SHPFKRGEKISGVVANLSRTNPLQTISEMRRTRQRVEYTGNIGGARYPHPSHWGKICFIS 1121
            SHP+K+ E+ISGVVA L RTNPLQTI++MR+TRQ+V YTG +G ARYPHPSHWGKICF+S
Sbjct: 301  SHPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLS 360

Query: 1122 TPDGEHCGLIKNLASTGLVSTNVTEPFIDKLLDCGMEELVDDTSTSLDGKKYIFLDGELV 1301
            TPDGE+CGL+KNLA TGLVSTN+ E F+DKLLD GME+LVDDTST L GK  +FLDG  V
Sbjct: 361  TPDGENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNWV 420

Query: 1302 GVCQDSASFVAKLRSMRRRKELPNQVEIKRDEKQGEVRIFCDAGRVLRPLLVVRNIKKIK 1481
            GVC DS SFVA LR  RRRKE+P+QVEIKRDE+  EVR+F DAGR+LRPLLVV N+ KIK
Sbjct: 421  GVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKIK 480

Query: 1482 LIESGNYDFQSLLDNGVIELIGAEEEEDCRTAWGTEYL 1595
              + G+Y FQSLLD GVIE IG EEEEDCRTAWG  YL
Sbjct: 481  ASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYL 518


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  684 bits (1766), Expect = 0.0
 Identities = 332/568 (58%), Positives = 428/568 (75%), Gaps = 36/568 (6%)
 Frame = +3

Query: 6    VYTEKVLRSDR----EDRYIEKVGCEESSTELVLGQFPVMVKSDLCWMNGVDKGDCDFDH 173
            V+T+K++RSD+     +++++K    E   ++ +G+ PVMV S+LCWM+G D+ DC+FDH
Sbjct: 183  VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCEFDH 242

Query: 174  GGYFIINGAEKVFVAQEQSCLKRLWLSCTPTWKASYRHASIRKRVHVKIADTSKTKQTEG 353
            GGYFI+ GAEK+F+AQEQ CLKRLW+S   TW  +YR    R RV++K+ +T K +  +G
Sbjct: 243  GGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKG 302

Query: 354  -SKVLNVFFLTEMPVWILFFALGVSSDKELVNLIDADADDCGIRNILWASMREADKLCKD 530
             +K L+V+F  EMP+W+LFFALGVSSD+E+V+LID D  D  I NIL AS+ +ADK C+D
Sbjct: 303  EAKALSVYFFAEMPIWVLFFALGVSSDREVVDLIDVDIKDTNIINILVASIHDADKNCED 362

Query: 531  FRKGGKALSYVEKQLKTCEYPPEESVEESIATLLFPKLIGTKQKAHFLAYMVKSLLKAYT 710
            FRKG KAL+YV++ +K+C++PP+ESVEE I   LFP L G KQKA FL YMVK LL +Y 
Sbjct: 363  FRKGKKALAYVDRLVKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYI 422

Query: 711  GRRKLDCRDDLRNKRLELASELLDRELRVHINHARRKMIKHLQRDLDGDRALNRIAQYID 890
            GRRK+D RDD RNKRL+LA ELL+RELRVH+ HA R+M+K LQRDL GDR +  I  Y+D
Sbjct: 423  GRRKVDNRDDFRNKRLDLAGELLERELRVHVKHAERRMVKALQRDLCGDRQVQPIEHYLD 482

Query: 891  PSIVTNGLSRAFSTGAWSHPFKRGEKISGVVANLSRTNPLQTISEMRRTRQRVEYTGNIG 1070
             SI+TNGLSRAFSTG W HP+KR E++SGVVA L RTNPLQ  +++R+TRQ+V YTG +G
Sbjct: 483  ASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVG 542

Query: 1071 GARYPHPSHWGKICFISTPDGEHCGLIKNLASTGLVSTNVTEPFIDKLLDCGMEELVDDT 1250
             ARYPHPSHWGK+CF+STPDGE+CGL+KNLAS GLVST V +P ++ L  CGM++LVDD+
Sbjct: 543  DARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQKLVDDS 602

Query: 1251 STSLDGKKYIFLDGELVGVCQDSASFVAKLRSMRRRKELPN------------------- 1373
            +TSL GK+ + LDG+ VGVC+DSA FV+KLR  RRR E+P+                   
Sbjct: 603  ATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRQRRRNEVPHQLAHTLAIPPGICYLLPTH 662

Query: 1374 --------QVEIKRDEKQGEVRIFCDAGRVLRPLLVVRNIKKIKLI----ESGNYDFQSL 1517
                    QVE+KRDE+Q EVRIF DAGR++RPLLVV N+K IK +    + G+Y FQ+L
Sbjct: 663  VPVTLTEAQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIKALKDGMKGGDYGFQTL 722

Query: 1518 LDNGVIELIGAEEEEDCRTAWGTEYLMK 1601
            LD G+IELIG EEEEDCRTAWG EYL+K
Sbjct: 723  LDKGIIELIGPEEEEDCRTAWGVEYLLK 750