BLASTX nr result
ID: Bupleurum21_contig00012297
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00012297
(2228 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274321.2| PREDICTED: pentatricopeptide repeat-containi... 692 0.0
ref|XP_002512090.1| pentatricopeptide repeat-containing protein,... 663 0.0
ref|XP_004144175.1| PREDICTED: pentatricopeptide repeat-containi... 657 0.0
ref|XP_002315005.1| predicted protein [Populus trichocarpa] gi|2... 639 0.0
ref|NP_564247.1| pentatricopeptide repeat-containing protein [Ar... 631 e-178
>ref|XP_002274321.2| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
mitochondrial-like [Vitis vinifera]
gi|297738080|emb|CBI27281.3| unnamed protein product
[Vitis vinifera]
Length = 616
Score = 692 bits (1787), Expect = 0.0
Identities = 340/523 (65%), Positives = 424/523 (81%), Gaps = 3/523 (0%)
Frame = +2
Query: 2 MAEKMDLESMMNVFADWMTTQRWDDMKLLFEFWIKCFDKDGKANKPDVNLYNHYLRANLM 181
+++ +D+ S+MNVFADWMT+QRW DM LFEFWI+ DK+GK NKPDVNLYNHYLRA LM
Sbjct: 97 LSQTLDVPSLMNVFADWMTSQRWADMNQLFEFWIRSLDKNGKPNKPDVNLYNHYLRAKLM 156
Query: 182 KRAVPAQLLDLVAEMEDHGILPNTASFNLVLKAMNEYKEREAAVKLLDRMIETGIEYKAS 361
A +LLDLVA+MED+ I+PNTASFNLVLKAM + +E EAA KL RM++TG K S
Sbjct: 157 IGASAGELLDLVAQMEDYAIIPNTASFNLVLKAMYQARETEAAEKLFQRMLQTG---KES 213
Query: 362 LPDEESYHLVIGMLLNAGALEAALKYIDLNLKSGYMMSLDVFTKCVWSCAKHGKLDTLVS 541
+PD+ESY LV+GML ++AAL+Y+DL LKSGYM+S+ VF +CV SC G+LD LVS
Sbjct: 214 MPDDESYELVVGMLFLTDQIDAALRYVDLTLKSGYMLSMRVFAECVRSCVNKGRLDALVS 273
Query: 542 IIERCKKMDQNKALCPNWNLCLLMLDVAMEADNSVLAFYVLEFMAKRMIMGEKERPPNHL 721
IIERCK MDQNKAL P+WN+C+ + D+AM+ DNS LAFY LEFMA+ + GE R P L
Sbjct: 274 IIERCKTMDQNKALSPSWNMCIFIADIAMQEDNSKLAFYALEFMARWIARGENARGPVLL 333
Query: 722 YVYEGLVISLLGAASRTYSSRLLDASWTILKRSLRENRVPNAETYIAKIRAHASLGQLQK 901
V EGLV+S LG A RTYSS LLDASW IL+RSLR+ + P E+Y+AKI A A+LG LQ+
Sbjct: 334 SVDEGLVVSALGTAGRTYSSTLLDASWAILRRSLRQKKAPQPESYLAKIYADAALGNLQR 393
Query: 902 AFSALNEFETLHG---AKAEEDQLSPFSALHPLVVACSRNGFATLDSVYFRLEGLSKADP 1072
AFS L+EFET + +AEED SPF++LHPLV+A S+ GF TLD+VYF+LE LS+ADP
Sbjct: 394 AFSTLHEFETAYRNSPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTVYFQLENLSRADP 453
Query: 1073 PYKSVAALNCIILGCANIWDVDRAYQTFAAISSTFGLTPDINSYNALICAFGKLKKREEA 1252
PYKSVAALNC+ILGCANIWD+DRAYQTF AI S+FGLTPDI+SYNAL+ AFGKLKK EA
Sbjct: 454 PYKSVAALNCVILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSYNALMYAFGKLKKTFEA 513
Query: 1253 LKIFEHLKGLGVKPNAMTYTLLAEAHLIARDPRSALSIVDEMVISGFAPTKEILKKIRRR 1432
++FEHL LG+KPNAM+++LL +AHLI RD ++ALS+++EM+ +GFAP+KEILKK+RRR
Sbjct: 514 SRVFEHLTSLGIKPNAMSFSLLVDAHLINRDQKAALSVIEEMINAGFAPSKEILKKVRRR 573
Query: 1433 CIRELYSECNDQVEALAKKFEIRMGVENRRNMLFDLEFSADYA 1561
CIRE+ E NDQVE+LA+KF+IRMG ENRR+MLF+L ++ +YA
Sbjct: 574 CIREMDYESNDQVESLARKFKIRMGTENRRDMLFNLAYNTEYA 616
>ref|XP_002512090.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223549270|gb|EEF50759.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 619
Score = 663 bits (1711), Expect = 0.0
Identities = 328/523 (62%), Positives = 416/523 (79%), Gaps = 3/523 (0%)
Frame = +2
Query: 2 MAEKMDLESMMNVFADWMTTQRWDDMKLLFEFWIKCFDKDGKANKPDVNLYNHYLRANLM 181
M++ +DL S++N+FADWMT+QRW DMK LFEFWI+ D++GK NKPDVNL+NHYLRANLM
Sbjct: 99 MSQTLDLNSLLNLFADWMTSQRWSDMKQLFEFWIRSLDQNGKPNKPDVNLFNHYLRANLM 158
Query: 182 KRAVPAQLLDLVAEMEDHGILPNTASFNLVLKAMNEYKEREAAVKLLDRMIETGIEYKAS 361
A LLDL+A+MED+ +LPNTASFNLVLKAM + +E AA KLL RM TG E S
Sbjct: 159 TNATAVDLLDLLAQMEDYAVLPNTASFNLVLKAMFQARETAAAEKLLQRMELTGNE---S 215
Query: 362 LPDEESYHLVIGMLLNAGALEAALKYIDLNLKSGYMMSLDVFTKCVWSCAKHGKLDTLVS 541
PD+ESY LVIGML + ++AALKYID LK+G+ +S+ VFT+CV SC G+LDTLVS
Sbjct: 216 QPDDESYDLVIGMLFSTNQIDAALKYIDKTLKNGHTLSMRVFTECVKSCVNKGRLDTLVS 275
Query: 542 IIERCKKMDQNKALCPNWNLCLLMLDVAMEADNSVLAFYVLEFMAKRMIMGEKERPPNHL 721
IIE+CKK+DQNKAL P WN+C + +VAM+ DNS LA+Y LEFMAK + GE RP L
Sbjct: 276 IIEKCKKVDQNKALSPTWNMCYYIAEVAMQEDNSKLAYYALEFMAKWIARGENARPAILL 335
Query: 722 YVYEGLVISLLGAASRTYSSRLLDASWTILKRSLRENRVPNAETYIAKIRAHASLGQLQK 901
V EGLV+S LG A RTYSS LLDASW IL+RSLR+ + P+ E+Y+ +I A+ASLG LQK
Sbjct: 336 SVDEGLVVSALGTAGRTYSSTLLDASWAILRRSLRDKKAPSPESYLGRIYAYASLGNLQK 395
Query: 902 AFSALNEFETLHGA---KAEEDQLSPFSALHPLVVACSRNGFATLDSVYFRLEGLSKADP 1072
AF+ L E+E+ + + +AEE+ SPF++L+PLVVACS+ GF TLD+VYF+LE LS+A+
Sbjct: 396 AFTTLREYESAYDSSEKEAEEELFSPFTSLNPLVVACSKKGFETLDTVYFQLENLSRAER 455
Query: 1073 PYKSVAALNCIILGCANIWDVDRAYQTFAAISSTFGLTPDINSYNALICAFGKLKKREEA 1252
PYKSVAALNCIILGCANIWD+DRAYQTF AI S+F LTP+I+SYNALI AFG+LKK EA
Sbjct: 456 PYKSVAALNCIILGCANIWDIDRAYQTFEAIGSSFELTPNIHSYNALIYAFGRLKKTFEA 515
Query: 1253 LKIFEHLKGLGVKPNAMTYTLLAEAHLIARDPRSALSIVDEMVISGFAPTKEILKKIRRR 1432
++FEHL LG+KPNA TY LL +AHLI RD ++ALS+++EM+ +GF P+KE LKK+RRR
Sbjct: 516 ARVFEHLVSLGIKPNATTYLLLVDAHLINRDVKTALSVIEEMMSAGFTPSKETLKKVRRR 575
Query: 1433 CIRELYSECNDQVEALAKKFEIRMGVENRRNMLFDLEFSADYA 1561
C+RE+ + +D+V ++AK +IRMG ENRR+MLF+LE+S DYA
Sbjct: 576 CVREMDYDSDDRVGSVAKNCKIRMGTENRRDMLFNLEYSTDYA 618
>ref|XP_004144175.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
mitochondrial-like [Cucumis sativus]
gi|449489211|ref|XP_004158247.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g26460,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 657 bits (1696), Expect = 0.0
Identities = 324/522 (62%), Positives = 412/522 (78%), Gaps = 3/522 (0%)
Frame = +2
Query: 2 MAEKMDLESMMNVFADWMTTQRWDDMKLLFEFWIKCFDKDGKANKPDVNLYNHYLRANLM 181
+++ +D++ +++VFADWM +QRW+DMK LFEFWI+ DKDGK NKPDVNLYN+YLRANLM
Sbjct: 98 LSQTLDVQGLLSVFADWMASQRWEDMKQLFEFWIRSLDKDGKPNKPDVNLYNNYLRANLM 157
Query: 182 KRAVPAQLLDLVAEMEDHGILPNTASFNLVLKAMNEYKEREAAVKLLDRMIETGIEYKAS 361
A P LLDL+ MED+ I PNTASFNLVLKAM + +E EAA KLL+RM++TG E S
Sbjct: 158 SDATPGVLLDLLTRMEDYAISPNTASFNLVLKAMYQARETEAAEKLLERMLQTGEE---S 214
Query: 362 LPDEESYHLVIGMLLNAGALEAALKYIDLNLKSGYMMSLDVFTKCVWSCAKHGKLDTLVS 541
+PD+ESY LVI MLL+ ++AALKYIDL K G+M+SL F++CV SC + G+LDTLVS
Sbjct: 215 MPDDESYDLVIRMLLSTYQIDAALKYIDLTSKPGHMLSLKAFSECVRSCVRKGRLDTLVS 274
Query: 542 IIERCKKMDQNKALCPNWNLCLLMLDVAMEADNSVLAFYVLEFMAKRMIMGEKERPPNHL 721
+I++CK +NKAL P WN C + A + DNS LA+Y LEFMA+ + GE RPP HL
Sbjct: 275 VIDKCKATVENKALSPTWNSCYDIAIAATQQDNSKLAYYALEFMAQWIARGENARPPVHL 334
Query: 722 YVYEGLVISLLGAASRTYSSRLLDASWTILKRSLRENRVPNAETYIAKIRAHASLGQLQK 901
V EGLV+S LG A RTYSS LLDA+W++LKRSLR+ +VPN E+++ KI ASLG LQ+
Sbjct: 335 SVDEGLVVSTLGTAGRTYSSSLLDAAWSVLKRSLRQKKVPNPESFLGKIYTLASLGNLQR 394
Query: 902 AFSALNEFETLHGAKAE---EDQLSPFSALHPLVVACSRNGFATLDSVYFRLEGLSKADP 1072
AFS L EFE + + ED SPF++LHPLVVACS+ GF TLD VYF+LE LS+ADP
Sbjct: 395 AFSTLREFEEAYRNSDDGSCEDMFSPFTSLHPLVVACSKKGFETLDLVYFQLENLSRADP 454
Query: 1073 PYKSVAALNCIILGCANIWDVDRAYQTFAAISSTFGLTPDINSYNALICAFGKLKKREEA 1252
PYKSVAALNC+ILGCANIWD+DRAYQTF AI S+FGLTP+I+SYNAL+ AFG+LKK EA
Sbjct: 455 PYKSVAALNCVILGCANIWDLDRAYQTFEAIGSSFGLTPNIHSYNALMYAFGRLKKTFEA 514
Query: 1253 LKIFEHLKGLGVKPNAMTYTLLAEAHLIARDPRSALSIVDEMVISGFAPTKEILKKIRRR 1432
++FEHL GLG+KPNA +Y+LLA+AHLI RDP+SAL+ +D MV +GFAP+KE+LKK+RRR
Sbjct: 515 ARVFEHLVGLGIKPNATSYSLLADAHLINRDPKSALAAIDNMVTAGFAPSKELLKKVRRR 574
Query: 1433 CIRELYSECNDQVEALAKKFEIRMGVENRRNMLFDLEFSADY 1558
CIRE + ND+V LA+ F+IRMG E+RR++LF+L + ++Y
Sbjct: 575 CIREQDYDSNDKVGNLAQNFKIRMGSESRRDILFNLNYGSNY 616
>ref|XP_002315005.1| predicted protein [Populus trichocarpa] gi|222864045|gb|EEF01176.1|
predicted protein [Populus trichocarpa]
Length = 608
Score = 639 bits (1649), Expect = 0.0
Identities = 323/526 (61%), Positives = 405/526 (76%), Gaps = 6/526 (1%)
Frame = +2
Query: 2 MAEKMDLESMMNVFADWMTTQRWDDMKLLFEFWIKCFDKDGKANKPDVNLYNHYLRANLM 181
M MDL S+ N+ ADW T+QRW+D+K FE WIK D++GK NKPDV+LYNHYLRANLM
Sbjct: 88 MPPNMDLNSLSNMLADWTTSQRWEDIKGYFEAWIKSLDRNGKPNKPDVSLYNHYLRANLM 147
Query: 182 KRAVPAQLLDLVAEMEDHGILPNTASFNLVLKAMNEYKEREAAVKLLDRMIETGIEYKAS 361
+A LLDLVA+MED + PNT SFN VLKAM E E EAA KLL R+ G+
Sbjct: 148 MKASAGYLLDLVAQMEDFNLSPNTVSFNFVLKAMYEGLETEAAEKLLQRLANFGL----- 202
Query: 362 LPDEESYHLVIGMLLNAGALEA---ALKYIDLNLKSGYMMSLDVFTKCVWSCAKHGKLDT 532
PDEESY LV+ MLLN G ++A ALKYID LK Y++S+ VF CV SC G+LD
Sbjct: 203 FPDEESYDLVVTMLLNKGNIDAFDTALKYIDKILKGDYVLSMKVFDACVRSCCNFGRLDV 262
Query: 533 LVSIIERCKKMDQNKALCPNWNLCLLMLDVAMEADNSVLAFYVLEFMAKRMIMGEKERPP 712
L+SIIE+CKKMDQNKALCPNWNLC + ++A++ DNS L F LEFMA+ + GEK RP
Sbjct: 263 LLSIIEKCKKMDQNKALCPNWNLCNHIAEIALKEDNSKLLFCALEFMARWIARGEKARPI 322
Query: 713 NHLYVYEGLVISLLGAASRTYSSRLLDASWTILKRSLRENRVPNAETYIAKIRAHASLGQ 892
L V EGL+++ LG A RTY+S LLDASW IL+RSLR+ + PN E+YI KI AHASLG
Sbjct: 323 VLLSVDEGLIVAALGTAGRTYNSTLLDASWAILRRSLRQKKAPNPESYIGKIYAHASLGS 382
Query: 893 LQKAFSALNEFETLHGA---KAEEDQLSPFSALHPLVVACSRNGFATLDSVYFRLEGLSK 1063
LQKAF+ L E E+ +G+ +AEE+ SPFS+L+PLV+ACS+ GF TLDSVYF+LE LS+
Sbjct: 383 LQKAFATLRELESCYGSSDKEAEEELFSPFSSLNPLVLACSKKGFETLDSVYFQLENLSR 442
Query: 1064 ADPPYKSVAALNCIILGCANIWDVDRAYQTFAAISSTFGLTPDINSYNALICAFGKLKKR 1243
A+ PYKSVAALNCIILGCANIWD+DRAYQTF AISS+FGLTP+I+SYNALI AFG+LKK
Sbjct: 443 AESPYKSVAALNCIILGCANIWDLDRAYQTFEAISSSFGLTPNIHSYNALIFAFGRLKKT 502
Query: 1244 EEALKIFEHLKGLGVKPNAMTYTLLAEAHLIARDPRSALSIVDEMVISGFAPTKEILKKI 1423
EA +FEHL LGVKPNAM+Y+LL +AHLI RD ++A+ ++++M +GF P+KEILKK+
Sbjct: 503 FEASNVFEHLVSLGVKPNAMSYSLLVDAHLINRDTKAAVLVIEKMDSAGFVPSKEILKKV 562
Query: 1424 RRRCIRELYSECNDQVEALAKKFEIRMGVENRRNMLFDLEFSADYA 1561
+RRCIRE+ E +D+VE A+KF+ R+G +NRR++LF+LE+S D+A
Sbjct: 563 KRRCIREMEYESDDRVEFWARKFDYRLGSQNRRDLLFNLEYSTDFA 608
>ref|NP_564247.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173405|sp|Q9FZD1.1|PPR58_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g26460, mitochondrial; Flags: Precursor
gi|9797754|gb|AAF98572.1|AC013427_15 Contains similarity
to a hypothetical protein F21B7.16 gi|7485908 from
Arabidopsis thaliana BAC F21B7 gb|AC002560 and contains
multiple PPR PF|01535 repeats and a domain of unknown
function PF|00668. ESTs gb|T45755, gb|AI993167,
gb|AV554476, gb|T46823, gb|T41981, gb|AV546597,
gb|AI099868 come from this gene [Arabidopsis thaliana]
gi|19698979|gb|AAL91225.1| unknown protein [Arabidopsis
thaliana] gi|22136300|gb|AAM91228.1| unknown protein
[Arabidopsis thaliana] gi|332192573|gb|AEE30694.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 631 bits (1628), Expect = e-178
Identities = 314/519 (60%), Positives = 403/519 (77%), Gaps = 3/519 (0%)
Frame = +2
Query: 2 MAEKMDLESMMNVFADWMTTQRWDDMKLLFEFWIKCFDKDGKANKPDVNLYNHYLRANLM 181
++E +D+ S++N+FADW +QRW DMK LFE W++ DK+GK NKPDVNLYNHYLRANLM
Sbjct: 108 LSETLDMNSLLNMFADWTASQRWSDMKQLFEVWVRSLDKNGKPNKPDVNLYNHYLRANLM 167
Query: 182 KRAVPAQLLDLVAEMEDHGILPNTASFNLVLKAMNEYKEREAAVKLLDRMIETGIEYKAS 361
A +LDLVA ME+ + PNTAS+NLVLKAM + +E EAA+KLL+RM+ G K S
Sbjct: 168 MGASAGDMLDLVAPMEEFSVEPNTASYNLVLKAMYQARETEAAMKLLERMLLLG---KDS 224
Query: 362 LPDEESYHLVIGMLLNAGALEAALKYIDLNLKSGYMMSLDVFTKCVWSCAKHGKLDTLVS 541
LPD+ESY LVIGM G + A+K +D LKSGYM+S VFT+CV SC G+ DTLVS
Sbjct: 225 LPDDESYDLVIGMHFGVGKNDEAMKVMDTALKSGYMLSTSVFTECVRSCVAKGRTDTLVS 284
Query: 542 IIERCKKMDQNKALCPNWNLCLLMLDVAMEADNSVLAFYVLEFMAKRMIMGEKERPPNHL 721
IIERCK +D+NK+LCP+W LC + +VA++ DNS LAFY EFM K + GE RP
Sbjct: 285 IIERCKAVDRNKSLCPSWILCNYIAEVAIQEDNSKLAFYAFEFMFKWITRGEMARPSVIF 344
Query: 722 YVYEGLVISLLGAASRTYSSRLLDASWTILKRSLRENRVPNAETYIAKIRAHASLGQLQK 901
V EGLV++ L +A+RT SS L++ SWTILK+SLR + N +YIAKI A+ASLG LQK
Sbjct: 345 SVDEGLVVAGLASAARTCSSSLVEGSWTILKQSLRGRKAANPASYIAKINAYASLGNLQK 404
Query: 902 AFSALNEFETLHGAKAEE---DQLSPFSALHPLVVACSRNGFATLDSVYFRLEGLSKADP 1072
AF++L+E E+ + +E + LSPF++L+PLVVACS+ GF TLD VYF+LE LS+ D
Sbjct: 405 AFTSLHELESAYADSEKEVVEEMLSPFTSLYPLVVACSKKGFETLDEVYFQLESLSQGDT 464
Query: 1073 PYKSVAALNCIILGCANIWDVDRAYQTFAAISSTFGLTPDINSYNALICAFGKLKKREEA 1252
PYKSVAALNCIILGCAN WD+DRAYQTF AIS++FGLTP+I+SYNAL+ AFGK+KK EA
Sbjct: 465 PYKSVAALNCIILGCANTWDLDRAYQTFEAISASFGLTPNIDSYNALLYAFGKVKKTFEA 524
Query: 1253 LKIFEHLKGLGVKPNAMTYTLLAEAHLIARDPRSALSIVDEMVISGFAPTKEILKKIRRR 1432
+FEHL +GVKP++ TY+LL +AHLI RDP+SAL++VD+M+ +GF P++E LKK+RRR
Sbjct: 525 TNVFEHLVSIGVKPDSRTYSLLVDAHLINRDPKSALTVVDDMIKAGFEPSRETLKKLRRR 584
Query: 1433 CIRELYSECNDQVEALAKKFEIRMGVENRRNMLFDLEFS 1549
C+RE+ E +DQVEALAKKF+IRMG ENRRNMLF++++S
Sbjct: 585 CVREMDDENDDQVEALAKKFQIRMGSENRRNMLFNIDYS 623