BLASTX nr result
ID: Bupleurum21_contig00012273
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00012273
(1629 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23... 331 4e-88
emb|CBI25247.3| unnamed protein product [Vitis vinifera] 330 7e-88
ref|XP_002512770.1| uv excision repair protein rad23, putative [... 323 1e-85
ref|XP_002303970.1| predicted protein [Populus trichocarpa] gi|2... 323 1e-85
emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota] 320 9e-85
>ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis vinifera]
Length = 400
Score = 331 bits (848), Expect = 4e-88
Identities = 162/232 (69%), Positives = 188/232 (81%)
Frame = +3
Query: 570 NLEQTIQHIMDMGGGMWDKDTVTRALRAAYNNPERAVDYLYSGIPETAEVAASDIHLPEN 749
+LEQTIQ IMD+GGG WDK+TVTRALRAAYNNPERAVDYLYSGIPE AEVA H P +
Sbjct: 175 HLEQTIQQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPAD 234
Query: 750 RDAGHTISPNTGAVGALPGSAAPNISPLNMFPQENXXXXXXXXXXXXDYLRNNQQFQTLR 929
++ G +GA A P S PN SPLNMFPQE ++LRNN QFQ LR
Sbjct: 235 QETG------SGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALR 288
Query: 930 SLVQTNPQILEPMLQELGKQNPQILRQIQENHAEFLELLNEPIDASEGSLFNQPEEDTPH 1109
++VQ NPQIL+PMLQELGKQNP +LR IQE+HAEFL+L+NEP++ SEG +F+QPE++ PH
Sbjct: 289 AMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPH 348
Query: 1110 AISVTPAEQEAIERLEAMGFDRALVIEAFLACERNEELAINYLLENSGDYED 1265
AI+VTPAEQEAIERLEAMGFDRALVIEAFLAC+RNEELA+NYLLEN+GDYED
Sbjct: 349 AINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED 400
Score = 132 bits (331), Expect = 3e-28
Identities = 61/74 (82%), Positives = 71/74 (95%)
Frame = +2
Query: 113 MKLTVKTLKGSQFDIKVQPNDTIMAVKKNIEELQGKDNYPCGQQLLIHNGKVLKDESSLA 292
MKLTVKTLKGS F+I+VQP+DT+MAVKKNIE++QGKDNYPCGQQLLIHNGKVLKDE++L
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 293 ENNISEDGFLVVML 334
EN ++EDGFLVVML
Sbjct: 61 ENKVTEDGFLVVML 74
>emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 330 bits (846), Expect = 7e-88
Identities = 162/232 (69%), Positives = 187/232 (80%)
Frame = +3
Query: 570 NLEQTIQHIMDMGGGMWDKDTVTRALRAAYNNPERAVDYLYSGIPETAEVAASDIHLPEN 749
+LEQTIQ IMD+GGG WDK+TVTRALRAAYNNPERAVDYLYSGIPE AEVA H P +
Sbjct: 175 HLEQTIQQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPAD 234
Query: 750 RDAGHTISPNTGAVGALPGSAAPNISPLNMFPQENXXXXXXXXXXXXDYLRNNQQFQTLR 929
++ G GA A P S PN SPLNMFPQE ++LRNN QFQ LR
Sbjct: 235 QETG-------GAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALR 287
Query: 930 SLVQTNPQILEPMLQELGKQNPQILRQIQENHAEFLELLNEPIDASEGSLFNQPEEDTPH 1109
++VQ NPQIL+PMLQELGKQNP +LR IQE+HAEFL+L+NEP++ SEG +F+QPE++ PH
Sbjct: 288 AMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPH 347
Query: 1110 AISVTPAEQEAIERLEAMGFDRALVIEAFLACERNEELAINYLLENSGDYED 1265
AI+VTPAEQEAIERLEAMGFDRALVIEAFLAC+RNEELA+NYLLEN+GDYED
Sbjct: 348 AINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED 399
Score = 132 bits (331), Expect = 3e-28
Identities = 61/74 (82%), Positives = 71/74 (95%)
Frame = +2
Query: 113 MKLTVKTLKGSQFDIKVQPNDTIMAVKKNIEELQGKDNYPCGQQLLIHNGKVLKDESSLA 292
MKLTVKTLKGS F+I+VQP+DT+MAVKKNIE++QGKDNYPCGQQLLIHNGKVLKDE++L
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 293 ENNISEDGFLVVML 334
EN ++EDGFLVVML
Sbjct: 61 ENKVTEDGFLVVML 74
>ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein
rad23, putative [Ricinus communis]
Length = 359
Score = 323 bits (827), Expect = 1e-85
Identities = 167/235 (71%), Positives = 184/235 (78%), Gaps = 3/235 (1%)
Frame = +3
Query: 570 NLEQTIQHIMDMGGGMWDKDTVTRALRAAYNNPERAVDYLYSGIPETAEVAASDIHLPEN 749
NLEQTIQ IMDMGGG WDK+TVTRALRAAYNNPERAVDYLYSGIPETAEVA HLP
Sbjct: 131 NLEQTIQQIMDMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVAHLPAG 190
Query: 750 RDAGHTISPNTGAVGALPGSAAPNISPLNMFPQENXXXXXXXXXXXX---DYLRNNQQFQ 920
+ + TGA A P S PN SPLNMFPQE D+LRNN QFQ
Sbjct: 191 Q------ATETGAAPAAPLSGVPNSSPLNMFPQEALSAAGGGSAGGLGSLDFLRNNAQFQ 244
Query: 921 TLRSLVQTNPQILEPMLQELGKQNPQILRQIQENHAEFLELLNEPIDASEGSLFNQPEED 1100
TLRS+VQ NPQIL+PMLQELGKQNPQ+LR IQE+HAEFL+LLNEP++ SEG +F+Q E+D
Sbjct: 245 TLRSMVQANPQILQPMLQELGKQNPQLLRMIQEHHAEFLQLLNEPLEGSEGDIFDQGEQD 304
Query: 1101 TPHAISVTPAEQEAIERLEAMGFDRALVIEAFLACERNEELAINYLLENSGDYED 1265
PHAI+VTPAEQ AIERL AMGFDRALVIEAFLAC+RNE LA NYLLEN GD+ED
Sbjct: 305 MPHAINVTPAEQAAIERLVAMGFDRALVIEAFLACDRNEVLAANYLLENGGDFED 359
Score = 134 bits (337), Expect = 7e-29
Identities = 62/74 (83%), Positives = 72/74 (97%)
Frame = +2
Query: 113 MKLTVKTLKGSQFDIKVQPNDTIMAVKKNIEELQGKDNYPCGQQLLIHNGKVLKDESSLA 292
MKLTVKTLKGS F+I+VQPNDT+MAVKKNIE++QGKDNYPCGQQLLIHNGKVLKDE++LA
Sbjct: 1 MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 293 ENNISEDGFLVVML 334
+N ++EDGFLVVML
Sbjct: 61 DNKVTEDGFLVVML 74
>ref|XP_002303970.1| predicted protein [Populus trichocarpa] gi|222841402|gb|EEE78949.1|
predicted protein [Populus trichocarpa]
Length = 358
Score = 323 bits (827), Expect = 1e-85
Identities = 165/236 (69%), Positives = 188/236 (79%), Gaps = 4/236 (1%)
Frame = +3
Query: 570 NLEQTIQHIMDMGGGMWDKDTVTRALRAAYNNPERAVDYLYSGIPETAEVAASDIHLPEN 749
NLEQT+Q IMDMGGG WDK+TVTRALRAAYNNPERAVDYLYSGIPETAEVA P +
Sbjct: 129 NLEQTLQQIMDMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPAD 188
Query: 750 RDAGHTISPNTGAVGALPGSA--APNISPLNMFPQ--ENXXXXXXXXXXXXDYLRNNQQF 917
+ + TGA A P A APN SPLNMFP+ D+LRNNQQF
Sbjct: 189 Q------ATETGAAPAAPAPAFGAPNSSPLNMFPETISGGGGGAGGGLGSLDFLRNNQQF 242
Query: 918 QTLRSLVQTNPQILEPMLQELGKQNPQILRQIQENHAEFLELLNEPIDASEGSLFNQPEE 1097
Q LRS+VQ NPQIL+PMLQELGKQNPQ+LR IQE+HAEFL+L+NEP+D SEG +F+QP++
Sbjct: 243 QALRSMVQANPQILQPMLQELGKQNPQLLRIIQEHHAEFLQLINEPLDGSEGDIFDQPDQ 302
Query: 1098 DTPHAISVTPAEQEAIERLEAMGFDRALVIEAFLACERNEELAINYLLENSGDYED 1265
D PHAI+VTPAEQEAIERLEAMGFDRALVIEAFLAC+RNE+LA NYLLEN+GD+ED
Sbjct: 303 DMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEQLAANYLLENAGDFED 358
Score = 129 bits (324), Expect = 2e-27
Identities = 61/74 (82%), Positives = 68/74 (91%)
Frame = +2
Query: 113 MKLTVKTLKGSQFDIKVQPNDTIMAVKKNIEELQGKDNYPCGQQLLIHNGKVLKDESSLA 292
MKLTVKTLKGS F+IKV P DTIM VKKNIE+ QGKDNYPCGQQLLIHNGKVLKDE++LA
Sbjct: 1 MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 293 ENNISEDGFLVVML 334
+N ++EDGFLVVML
Sbjct: 61 DNKVTEDGFLVVML 74
>emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 320 bits (819), Expect = 9e-85
Identities = 160/233 (68%), Positives = 186/233 (79%), Gaps = 1/233 (0%)
Frame = +3
Query: 570 NLEQTIQHIMDMGGGMWDKDTVTRALRAAYNNPERAVDYLYSGIPETAEVAASDIHLPEN 749
NLEQTIQHIMDMGGGMWD + V+RALRAAYNNPERAVDYLYSGIPE AE A H +
Sbjct: 149 NLEQTIQHIMDMGGGMWDTNMVSRALRAAYNNPERAVDYLYSGIPEMAEAAVPVSHFQGD 208
Query: 750 R-DAGHTISPNTGAVGALPGSAAPNISPLNMFPQENXXXXXXXXXXXXDYLRNNQQFQTL 926
+ +AG+ + G GA PG APN PLNMFPQE ++LRNN QFQTL
Sbjct: 209 QINAGNNAISDNGVAGAAPG--APNSLPLNMFPQETLSGVTGAGLGSLEFLRNNPQFQTL 266
Query: 927 RSLVQTNPQILEPMLQELGKQNPQILRQIQENHAEFLELLNEPIDASEGSLFNQPEEDTP 1106
RS+VQ NPQIL+PML ELGKQNPQ+LRQIQE+H EFL+L+NEP++ASEG +F+QPE+D P
Sbjct: 267 RSMVQRNPQILQPMLLELGKQNPQLLRQIQEHHEEFLQLINEPVEASEGDMFDQPEQDVP 326
Query: 1107 HAISVTPAEQEAIERLEAMGFDRALVIEAFLACERNEELAINYLLENSGDYED 1265
I+VT A+QEAIERLEAMGFDR LVIEAFLAC+RNEELA+NYLLEN+GD+ED
Sbjct: 327 QEITVTAADQEAIERLEAMGFDRGLVIEAFLACDRNEELAVNYLLENAGDFED 379
Score = 135 bits (340), Expect = 3e-29
Identities = 64/74 (86%), Positives = 71/74 (95%)
Frame = +2
Query: 113 MKLTVKTLKGSQFDIKVQPNDTIMAVKKNIEELQGKDNYPCGQQLLIHNGKVLKDESSLA 292
MKLTVKTLKGS F+I+ QPNDT+MA+KKNIE+LQGKDNYPCGQQLLIHNGKVLKDES+LA
Sbjct: 1 MKLTVKTLKGSHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 293 ENNISEDGFLVVML 334
E+ ISEDGFLVVML
Sbjct: 61 ESKISEDGFLVVML 74