BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00012193
         (620 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation spec...   172   2e-62
emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]   172   2e-62
ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arab...   167   1e-61
ref|NP_176297.1| cleavage and polyadenylation specificity factor...   164   6e-61
ref|XP_002323824.1| predicted protein [Populus trichocarpa] gi|2...   171   3e-60

>ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-I-like [Vitis vinifera]
          Length = 694

 Score =  172 bits (437), Expect(2) = 2e-62
 Identities = 85/104 (81%), Positives = 94/104 (90%)
 Frame = +1

Query: 1   MASEDLHVYSQLSTANVMQRISIPYTGAFGVIKHRLKQIYESVESSTDEELGVPTLRVHE 180
           MA +DLHV+SQLSTANV QRI+IPYTGAFGVIKHRLKQIYESVES  DEE  VP  RVHE
Sbjct: 504 MAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKHRLKQIYESVESLPDEESEVPAFRVHE 563

Query: 181 RVTVKQESEKHVSLHWSADPISDMVSDSVVALVLNASKEMPKVV 312
           RVTVK ESEKH+SLHW++DPISDMVSDS+VALVLN S+E+PKVV
Sbjct: 564 RVTVKHESEKHISLHWTSDPISDMVSDSIVALVLNISREIPKVV 607



 Score = 92.8 bits (229), Expect(2) = 2e-62
 Identities = 46/56 (82%), Positives = 51/56 (91%)
 Frame = +2

Query: 407 KLGENGKLIITVDGNVANLDKLSGDVESENAGLKERVRVAFERIQTAVKPIPLSAS 574
           KLGENG L+I+VDGNVA+LDK SG+VESEN GLKERVRVAF+RIQ AVKPIPLS S
Sbjct: 639 KLGENGNLVISVDGNVAHLDKQSGNVESENEGLKERVRVAFQRIQNAVKPIPLSVS 694


>emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
          Length = 687

 Score =  172 bits (437), Expect(2) = 2e-62
 Identities = 85/104 (81%), Positives = 94/104 (90%)
 Frame = +1

Query: 1   MASEDLHVYSQLSTANVMQRISIPYTGAFGVIKHRLKQIYESVESSTDEELGVPTLRVHE 180
           MA +DLHV+SQLSTANV QRI+IPYTGAFGVIKHRLKQIYESVES  DEE  VP  RVHE
Sbjct: 497 MAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKHRLKQIYESVESLPDEESEVPAFRVHE 556

Query: 181 RVTVKQESEKHVSLHWSADPISDMVSDSVVALVLNASKEMPKVV 312
           RVTVK ESEKH+SLHW++DPISDMVSDS+VALVLN S+E+PKVV
Sbjct: 557 RVTVKHESEKHISLHWTSDPISDMVSDSIVALVLNISREIPKVV 600



 Score = 92.8 bits (229), Expect(2) = 2e-62
 Identities = 46/56 (82%), Positives = 51/56 (91%)
 Frame = +2

Query: 407 KLGENGKLIITVDGNVANLDKLSGDVESENAGLKERVRVAFERIQTAVKPIPLSAS 574
           KLGENG L+I+VDGNVA+LDK SG+VESEN GLKERVRVAF+RIQ AVKPIPLS S
Sbjct: 632 KLGENGNLVISVDGNVAHLDKQSGNVESENEGLKERVRVAFQRIQNAVKPIPLSVS 687


>ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
           lyrata] gi|297332410|gb|EFH62828.1| hypothetical protein
           ARALYDRAFT_475225 [Arabidopsis lyrata subsp. lyrata]
          Length = 693

 Score =  167 bits (422), Expect(2) = 1e-61
 Identities = 79/104 (75%), Positives = 96/104 (92%)
 Frame = +1

Query: 1   MASEDLHVYSQLSTANVMQRISIPYTGAFGVIKHRLKQIYESVESSTDEELGVPTLRVHE 180
           MA ++LHV+SQLSTA V QRI+IP+ GAFGVIKHRL++I+ESVESSTDEE G+P L+VHE
Sbjct: 502 MAPDELHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKIFESVESSTDEESGLPALKVHE 561

Query: 181 RVTVKQESEKHVSLHWSADPISDMVSDSVVALVLNASKEMPKVV 312
           RVTVKQESEKH+SL WS+DPISDMVSDS+VAL+LN S+E+PK+V
Sbjct: 562 RVTVKQESEKHISLQWSSDPISDMVSDSIVALILNISREVPKIV 605



 Score = 95.5 bits (236), Expect(2) = 1e-61
 Identities = 48/56 (85%), Positives = 53/56 (94%)
 Frame = +2

Query: 407 KLGENGKLIITVDGNVANLDKLSGDVESENAGLKERVRVAFERIQTAVKPIPLSAS 574
           KLGENGKL+I VDGNVA LDK SG+VESE++GLKERVRVAFERIQ+AVKPIPLSAS
Sbjct: 638 KLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRVAFERIQSAVKPIPLSAS 693


>ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 3-I
           [Arabidopsis thaliana] gi|30696512|ref|NP_849835.1|
           cleavage and polyadenylation specificity factor subunit
           3-I [Arabidopsis thaliana]
           gi|79320389|ref|NP_001031215.1| cleavage and
           polyadenylation specificity factor subunit 3-I
           [Arabidopsis thaliana]
           gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName:
           Full=Cleavage and polyadenylation specificity factor
           subunit 3-I; AltName: Full=Cleavage and polyadenylation
           specificity factor 73 kDa subunit I; Short=AtCPSF73-I;
           Short=CPSF 73 kDa subunit I
           gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage
           and polyadenylation specificity factor; 72745-70039
           [Arabidopsis thaliana] gi|23297661|gb|AAN13003.1|
           putative cleavage and polyadenylation specificity factor
           [Arabidopsis thaliana] gi|24415578|gb|AAN41458.1|
           putative cleavage and polyadenylation specificity factor
           73 kDa subunit [Arabidopsis thaliana]
           gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis
           thaliana] gi|222423059|dbj|BAH19511.1| AT1G61010
           [Arabidopsis thaliana] gi|332195645|gb|AEE33766.1|
           cleavage and polyadenylation specificity factor subunit
           3-I [Arabidopsis thaliana] gi|332195646|gb|AEE33767.1|
           cleavage and polyadenylation specificity factor subunit
           3-I [Arabidopsis thaliana] gi|332195647|gb|AEE33768.1|
           cleavage and polyadenylation specificity factor subunit
           3-I [Arabidopsis thaliana]
          Length = 693

 Score =  164 bits (416), Expect(2) = 6e-61
 Identities = 78/104 (75%), Positives = 95/104 (91%)
 Frame = +1

Query: 1   MASEDLHVYSQLSTANVMQRISIPYTGAFGVIKHRLKQIYESVESSTDEELGVPTLRVHE 180
           MA ++LHV+SQLSTA V QRI+IP+ GAFGVIKHRL++I+ESVE STDEE G+P L+VHE
Sbjct: 502 MAPDELHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHE 561

Query: 181 RVTVKQESEKHVSLHWSADPISDMVSDSVVALVLNASKEMPKVV 312
           RVTVKQESEKH+SL WS+DPISDMVSDS+VAL+LN S+E+PK+V
Sbjct: 562 RVTVKQESEKHISLQWSSDPISDMVSDSIVALILNISREVPKIV 605



 Score = 95.5 bits (236), Expect(2) = 6e-61
 Identities = 48/56 (85%), Positives = 53/56 (94%)
 Frame = +2

Query: 407 KLGENGKLIITVDGNVANLDKLSGDVESENAGLKERVRVAFERIQTAVKPIPLSAS 574
           KLGENGKL+I VDGNVA LDK SG+VESE++GLKERVRVAFERIQ+AVKPIPLSAS
Sbjct: 638 KLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRVAFERIQSAVKPIPLSAS 693


>ref|XP_002323824.1| predicted protein [Populus trichocarpa] gi|222866826|gb|EEF03957.1|
           predicted protein [Populus trichocarpa]
          Length = 699

 Score =  171 bits (432), Expect(2) = 3e-60
 Identities = 81/104 (77%), Positives = 96/104 (92%)
 Frame = +1

Query: 1   MASEDLHVYSQLSTANVMQRISIPYTGAFGVIKHRLKQIYESVESSTDEELGVPTLRVHE 180
           MA EDLHV+SQLST N+ QRI+IP++GAFGVIKHRL+QIYESVES TDEE G PTL+VHE
Sbjct: 505 MAPEDLHVFSQLSTGNITQRITIPFSGAFGVIKHRLEQIYESVESGTDEESGSPTLQVHE 564

Query: 181 RVTVKQESEKHVSLHWSADPISDMVSDSVVALVLNASKEMPKVV 312
            VTVKQES++H+SLHW+ADPISDMVSDS+VALVLN S+E+PKV+
Sbjct: 565 LVTVKQESDRHISLHWTADPISDMVSDSIVALVLNISREVPKVI 608



 Score = 87.0 bits (214), Expect(2) = 3e-60
 Identities = 42/53 (79%), Positives = 47/53 (88%)
 Frame = +2

Query: 407 KLGENGKLIITVDGNVANLDKLSGDVESENAGLKERVRVAFERIQTAVKPIPL 565
           KLGENGKL++ VDGNVA LDK SGDVESEN GLKERVR AF RI++AV+PIPL
Sbjct: 640 KLGENGKLVLRVDGNVAELDKQSGDVESENEGLKERVRTAFRRIRSAVRPIPL 692