BLASTX nr result

ID: Bupleurum21_contig00012106 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00012106
         (748 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326924.1| predicted protein [Populus trichocarpa] gi|1...   225   9e-57
ref|XP_002894050.1| hypothetical protein ARALYDRAFT_473889 [Arab...   224   2e-56
gb|ABK96322.1| unknown [Populus trichocarpa x Populus deltoides]      223   3e-56
ref|NP_564506.1| succinate dehydrogenase 5 [Arabidopsis thaliana...   222   7e-56
ref|XP_002284591.1| PREDICTED: uncharacterized protein At1g47420...   219   5e-55

>ref|XP_002326924.1| predicted protein [Populus trichocarpa] gi|118481849|gb|ABK92861.1|
           unknown [Populus trichocarpa]
           gi|222835239|gb|EEE73674.1| predicted protein [Populus
           trichocarpa]
          Length = 239

 Score =  225 bits (573), Expect = 9e-57
 Identities = 108/155 (69%), Positives = 132/155 (85%)
 Frame = -2

Query: 744 QIKNAIKDLLAADWSELPKAVTNNAKKELSKNTEDKAGQEILKNVLVAAEAVEEFTGKLV 565
           +I N  KDL+A +W ELP AV ++AKK LSKNT+DK GQEILKNV  AAEAVEEF GK++
Sbjct: 85  EILNVFKDLMATNWDELPNAVVSDAKKALSKNTDDKVGQEILKNVFRAAEAVEEFGGKIM 144

Query: 564 SLRMEIDDSVGLTGEDVKPLPDLFAKALLTAFQRYNAYLEAFGPDEAFLRKKVENELGTR 385
           SL+ME+DD +GL+GE+VKPLP+L A A+ T +QRY AYL++FGP E +LRKKVE ELG+R
Sbjct: 145 SLKMELDDIIGLSGENVKPLPELHANAIRTFYQRYAAYLDSFGPGEGYLRKKVETELGSR 204

Query: 384 MIHLKMRCGGLGSEWGKITVLGTSGLSGSYVEHRA 280
           MI+LKMRC GLG+EWGK+TVLGTSGL+GSYVE RA
Sbjct: 205 MIYLKMRCCGLGAEWGKVTVLGTSGLAGSYVEQRA 239


>ref|XP_002894050.1| hypothetical protein ARALYDRAFT_473889 [Arabidopsis lyrata subsp.
           lyrata] gi|297339892|gb|EFH70309.1| hypothetical protein
           ARALYDRAFT_473889 [Arabidopsis lyrata subsp. lyrata]
          Length = 260

 Score =  224 bits (570), Expect = 2e-56
 Identities = 109/154 (70%), Positives = 128/154 (83%)
 Frame = -2

Query: 741 IKNAIKDLLAADWSELPKAVTNNAKKELSKNTEDKAGQEILKNVLVAAEAVEEFTGKLVS 562
           + NA KDL+AADW+ELP AV  NAK  +SKNT+DKAGQE LKNV  AAEAVEEF G L S
Sbjct: 107 VLNAFKDLMAADWAELPSAVVRNAKSAISKNTDDKAGQEALKNVFRAAEAVEEFGGILTS 166

Query: 561 LRMEIDDSVGLTGEDVKPLPDLFAKALLTAFQRYNAYLEAFGPDEAFLRKKVENELGTRM 382
           ++MEIDDS+G++GE VKPLP+    AL TA+QRY  YL++F P+E +L+KKVE ELGT+M
Sbjct: 167 IKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYADYLDSFEPEEVYLKKKVEMELGTKM 226

Query: 381 IHLKMRCGGLGSEWGKITVLGTSGLSGSYVEHRA 280
           IHLKMRC GLGSEWGK+TVLGTSGLSGSYVE RA
Sbjct: 227 IHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 260


>gb|ABK96322.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 239

 Score =  223 bits (568), Expect = 3e-56
 Identities = 107/155 (69%), Positives = 132/155 (85%)
 Frame = -2

Query: 744 QIKNAIKDLLAADWSELPKAVTNNAKKELSKNTEDKAGQEILKNVLVAAEAVEEFTGKLV 565
           +I N  KDL+A +W ELP AV ++AKK LSKNT+DKAGQ+ILKNV  AAEAVEEF GK++
Sbjct: 85  EILNVFKDLMATNWDELPNAVVSDAKKALSKNTDDKAGQDILKNVFRAAEAVEEFGGKIM 144

Query: 564 SLRMEIDDSVGLTGEDVKPLPDLFAKALLTAFQRYNAYLEAFGPDEAFLRKKVENELGTR 385
           SL+ME+DD +GL+GE+VKPLP+L   A+ T +QRY AYL++FGP E +LRKKVE ELG+R
Sbjct: 145 SLKMELDDIIGLSGENVKPLPELHDNAIRTFYQRYAAYLDSFGPGEGYLRKKVETELGSR 204

Query: 384 MIHLKMRCGGLGSEWGKITVLGTSGLSGSYVEHRA 280
           MI+LKMRC GLG+EWGK+TVLGTSGL+GSYVE RA
Sbjct: 205 MIYLKMRCCGLGAEWGKVTVLGTSGLAGSYVEQRA 239


>ref|NP_564506.1| succinate dehydrogenase 5 [Arabidopsis thaliana]
           gi|25091506|sp|Q9SX77.1|UMP6_ARATH RecName:
           Full=Uncharacterized protein At1g47420, mitochondrial;
           Flags: Precursor gi|5668814|gb|AAD46040.1|AC007519_25
           ESTs gb|H36253 and gb|AA04251 come from this gene
           [Arabidopsis thaliana]
           gi|12744995|gb|AAK06877.1|AF344326_1 unknown protein
           [Arabidopsis thaliana] gi|14334512|gb|AAK59453.1|
           unknown protein [Arabidopsis thaliana]
           gi|15450966|gb|AAK96754.1| Unknown protein [Arabidopsis
           thaliana] gi|17104551|gb|AAL34164.1| unknown protein
           [Arabidopsis thaliana] gi|21536627|gb|AAM60959.1|
           unknown [Arabidopsis thaliana]
           gi|23198274|gb|AAN15664.1| Unknown protein [Arabidopsis
           thaliana] gi|332194047|gb|AEE32168.1| succinate
           dehydrogenase 5 [Arabidopsis thaliana]
          Length = 257

 Score =  222 bits (565), Expect = 7e-56
 Identities = 108/154 (70%), Positives = 128/154 (83%)
 Frame = -2

Query: 741 IKNAIKDLLAADWSELPKAVTNNAKKELSKNTEDKAGQEILKNVLVAAEAVEEFTGKLVS 562
           + NA KDL+AADW+ELP AV  +AK  +SKNT+DKAGQE LKNV  AAEAVEEF G L S
Sbjct: 104 VLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVEEFGGILTS 163

Query: 561 LRMEIDDSVGLTGEDVKPLPDLFAKALLTAFQRYNAYLEAFGPDEAFLRKKVENELGTRM 382
           ++MEIDDS+G++GE VKPLP+    AL TA+QRY  YL++F P+E +L+KKVE ELGT+M
Sbjct: 164 IKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKM 223

Query: 381 IHLKMRCGGLGSEWGKITVLGTSGLSGSYVEHRA 280
           IHLKMRC GLGSEWGK+TVLGTSGLSGSYVE RA
Sbjct: 224 IHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257


>ref|XP_002284591.1| PREDICTED: uncharacterized protein At1g47420, mitochondrial [Vitis
           vinifera] gi|147811478|emb|CAN63226.1| hypothetical
           protein VITISV_002665 [Vitis vinifera]
           gi|302142337|emb|CBI19540.3| unnamed protein product
           [Vitis vinifera]
          Length = 242

 Score =  219 bits (558), Expect = 5e-55
 Identities = 107/155 (69%), Positives = 127/155 (81%)
 Frame = -2

Query: 744 QIKNAIKDLLAADWSELPKAVTNNAKKELSKNTEDKAGQEILKNVLVAAEAVEEFTGKLV 565
           +I+   KDL+AA W ELP +V ++A K LSKNT+DKAGQE L NV  AAEA  EF G LV
Sbjct: 87  EIQTVFKDLMAASWDELPDSVISSANKVLSKNTDDKAGQEALANVFRAAEAAVEFGGILV 146

Query: 564 SLRMEIDDSVGLTGEDVKPLPDLFAKALLTAFQRYNAYLEAFGPDEAFLRKKVENELGTR 385
           +LRMEIDD VG++GE+VKPLPD F  AL+T F+RY  YL++FGPDEAFLRKKVE ELGT+
Sbjct: 147 TLRMEIDDLVGISGENVKPLPDEFVNALVTVFKRYTTYLDSFGPDEAFLRKKVEMELGTK 206

Query: 384 MIHLKMRCGGLGSEWGKITVLGTSGLSGSYVEHRA 280
           MIHLK+RC  LG+EWGK+T+LGTSGLSGSYVE RA
Sbjct: 207 MIHLKLRCSDLGAEWGKVTLLGTSGLSGSYVEQRA 241


Top