BLASTX nr result
ID: Bupleurum21_contig00011939
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00011939
(1998 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ... 649 0.0
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,... 625 e-176
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,... 620 e-175
ref|XP_002333134.1| predicted protein [Populus trichocarpa] gi|2... 619 e-175
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [... 619 e-174
>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|302143685|emb|CBI22546.3| unnamed protein product
[Vitis vinifera]
Length = 518
Score = 649 bits (1674), Expect = 0.0
Identities = 342/519 (65%), Positives = 402/519 (77%), Gaps = 3/519 (0%)
Frame = +3
Query: 147 MGVMTVSSSVA--RTPLGSSTRLSRYSFPTKRASVTMFKTDKPKNKALVAPKEVVSSAIE 320
MGV+TVSSS + RTP G + + S + P +R V FK DK KN ALV P E + IE
Sbjct: 1 MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60
Query: 321 KSEGKRKILRQAKKPLERVQAFSVAEAPSCPLDLDYFEAAAKLENIYKLSPAPEVYDDQE 500
S+ +K LR+A KP +RV+A S E C ++LDY EAAAKLENIYKLSPA +V + ++
Sbjct: 61 TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED 120
Query: 501 KVHETKTVRKGRKKKIDGDEKKDNKSIGNVVRSQKSDSKRLNLEKRIAL-RLNREARVHS 677
+ R+ RK+ D+K + + NVVR KRL+LEKRIAL ++ +E V S
Sbjct: 121 LERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVAS 180
Query: 678 AAKRRKLSGENEIEKIDRLVREYSVFTDLVSLDWKKMKIPPVLSSSEHTWLFKLMQPMKA 857
K+R +NE E ID LVREYS TDLVSLDWKKMKIPPVL SEH WLFKLMQPMK
Sbjct: 181 IQKKR--DSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKG 238
Query: 858 ILSVKDNLRNDLGREPTDGELAQATALNVVQLKKQIEVGQAARSKLIKHNLRLIFFVMNK 1037
+L VKDNL+ DLGREPTDGELA+A +++ VQ+++ +EVGQAAR+KLIKHNLRL+ FV+NK
Sbjct: 239 LLEVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINK 298
Query: 1038 YFQEFSNGPKFQDMCQAGVKGLITAIDRFEPKRKLRLSTYGLFWIRHSIIRSMTLSSFTK 1217
YFQEF+NGPKFQD+CQAGVKGLITAIDRFEPKR RLSTYGLFWIRH+I+RSMTLSSFT+
Sbjct: 299 YFQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTR 358
Query: 1218 VSFGLESVRADIQKAKLQLTFELHREPTEEEIIEKVGISIERYNEVMRASKPVLSLHARH 1397
VSFGLESVR +IQ+AKL+L F+L R PTEEEIIEKVGIS ERY+EVMRASK VLSLHARH
Sbjct: 359 VSFGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARH 418
Query: 1398 SVTQEEFISGITDTEGTGGDKKRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRT 1577
+ TQEE+I+GITD EG GGD+ RQ A KPKESLV+RQRYGLDGKGDRT
Sbjct: 419 ATTQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRT 478
Query: 1578 LGEIAGNLNISREMVRKHEVKAFMKLKHPARVDYLRRYI 1694
LGEIAGNL+ISREMVRKHEVKA MKLKHPARVDYLR+YI
Sbjct: 479 LGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYI 517
>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 515
Score = 625 bits (1612), Expect = e-176
Identities = 327/522 (62%), Positives = 399/522 (76%), Gaps = 5/522 (0%)
Frame = +3
Query: 147 MGVMTVSSSVARTPLGSSTRLSRYSFPTKRASVTMFKTDKPKNKALVAPKEVVSSAIEKS 326
MGV+TVSS+ ARTP + S +S KR S+ FK DK N LV+P E V+ +E +
Sbjct: 1 MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
Query: 327 EGKRKILRQAKKPLERVQAFSVAEAPSCPLDLDYFEAAAKLENIYKLSPAPEVYDDQEKV 506
++K KPL+RV+A + EA C LDLDY EAAAKLENI+KLSP E D +K
Sbjct: 61 NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTE---DSDKE 117
Query: 507 HETKTVRKGRKKKIDGDEKKDNKSIGNVVRSQKSDSKRLNLEKRIALRLNREARVHSAAK 686
+ ++G+K+ +K N+ +VR+Q KRL+L+KRIAL+ R+A+ + K
Sbjct: 118 CKDGRSKRGQKRS----KKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKRKAKRNKEGK 173
Query: 687 -----RRKLSGENEIEKIDRLVREYSVFTDLVSLDWKKMKIPPVLSSSEHTWLFKLMQPM 851
R++ +NE ++IDRLVR+YS TDLVSLDWKKMKIPPVL SSEHT LFKL+QPM
Sbjct: 174 AVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPM 233
Query: 852 KAILSVKDNLRNDLGREPTDGELAQATALNVVQLKKQIEVGQAARSKLIKHNLRLIFFVM 1031
KA++ V++ L+ LGREPT+GELA AT +NV+Q+++Q+EVG+AAR+KLIKHNLRL+ FV+
Sbjct: 234 KALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVI 293
Query: 1032 NKYFQEFSNGPKFQDMCQAGVKGLITAIDRFEPKRKLRLSTYGLFWIRHSIIRSMTLSSF 1211
NKYF++F++GPKFQD+CQAGVKGLITAIDRFEPKRK RLSTY LFWIRH+IIRSMTLSSF
Sbjct: 294 NKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSF 353
Query: 1212 TKVSFGLESVRADIQKAKLQLTFELHREPTEEEIIEKVGISIERYNEVMRASKPVLSLHA 1391
T+VSFGL+SVR +IQ+AKL+L ELHR PTE EI KVGIS ERY EVMRA+KPV SLH+
Sbjct: 354 TRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHS 413
Query: 1392 RHSVTQEEFISGITDTEGTGGDKKRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGD 1571
RHS T EE I+GITD EGTGGD +RQPA KPKESLVIRQRYGLDGKG+
Sbjct: 414 RHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGN 473
Query: 1572 RTLGEIAGNLNISREMVRKHEVKAFMKLKHPARVDYLRRYIL 1697
RTLGEIAGNLNISREMVRKHEVKA MKLKHPARVDYLRRY++
Sbjct: 474 RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI 515
>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 514
Score = 620 bits (1599), Expect = e-175
Identities = 324/521 (62%), Positives = 398/521 (76%), Gaps = 4/521 (0%)
Frame = +3
Query: 147 MGVMTVSSSVARTPLGSSTRLSRYSFPTKRASVTMFKTDKPKNKALVAPKEVVSSAIEKS 326
MGV+TVSS+ ARTP + S +S KR S+ FK DK N LV+P E V+ +E +
Sbjct: 1 MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60
Query: 327 EGKRKILRQAKKPLERVQAFSVAEAPSCPLDLDYFEAAAKLENIYKLSPAPEVYDDQEKV 506
++K KPL+RV+A + EA C LDLDY EAAAKLENI+KLSP E D +K
Sbjct: 61 NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTE---DSDKE 117
Query: 507 HETKTVRKGRKKKIDGDEKKDNKSIGNVVRSQKSDSKRLNLEKRIALRLNREARVHSAAK 686
+ ++G+K+ +K N+ +VR+Q KRL+L+KRIAL+ +E + + +
Sbjct: 118 CKDGRSKRGQKRS----KKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLR 173
Query: 687 RRK----LSGENEIEKIDRLVREYSVFTDLVSLDWKKMKIPPVLSSSEHTWLFKLMQPMK 854
++K + E + ++IDRLVR+YS TDLVSLDWKKMKIPPVL SSEHT LFKL+QPMK
Sbjct: 174 KQKDTKNEADEIDDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMK 233
Query: 855 AILSVKDNLRNDLGREPTDGELAQATALNVVQLKKQIEVGQAARSKLIKHNLRLIFFVMN 1034
A++ V++ L+ LGREPT+GELA AT +NV+Q+++Q+EVG+AAR+KLIKHNLRL+ FV+N
Sbjct: 234 ALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVIN 293
Query: 1035 KYFQEFSNGPKFQDMCQAGVKGLITAIDRFEPKRKLRLSTYGLFWIRHSIIRSMTLSSFT 1214
KYF++F++GPKFQD+CQAGVKGLITAIDRFEPKRK RLSTY LFWIRH+IIRSMTLSSFT
Sbjct: 294 KYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFT 353
Query: 1215 KVSFGLESVRADIQKAKLQLTFELHREPTEEEIIEKVGISIERYNEVMRASKPVLSLHAR 1394
+VSFGL+SVR +IQ+AKL+L ELHR PTE EI KVGIS ERY EVMRA+KPV SLH+R
Sbjct: 354 RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSR 413
Query: 1395 HSVTQEEFISGITDTEGTGGDKKRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDR 1574
HS T EE I+GITD EGTGGD +RQPA KPKESLVIRQRYGLDGKG+R
Sbjct: 414 HSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNR 473
Query: 1575 TLGEIAGNLNISREMVRKHEVKAFMKLKHPARVDYLRRYIL 1697
TLGEIAGNLNISREMVRKHEVKA MKLKHPARVDYLRRY++
Sbjct: 474 TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI 514
>ref|XP_002333134.1| predicted protein [Populus trichocarpa] gi|222834948|gb|EEE73397.1|
predicted protein [Populus trichocarpa]
Length = 512
Score = 619 bits (1597), Expect = e-175
Identities = 324/517 (62%), Positives = 403/517 (77%)
Frame = +3
Query: 147 MGVMTVSSSVARTPLGSSTRLSRYSFPTKRASVTMFKTDKPKNKALVAPKEVVSSAIEKS 326
MGV++VSSS +RTPLG ST+ S Y KR + FK DK N +LVAP E + +E +
Sbjct: 1 MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSNNTSLVAPHEQIPLPVETT 60
Query: 327 EGKRKILRQAKKPLERVQAFSVAEAPSCPLDLDYFEAAAKLENIYKLSPAPEVYDDQEKV 506
+GK++ L ++KK R++A +P C L +DY EAAAKLENIYKLSP + D ++
Sbjct: 61 KGKKR-LGKSKKSSNRLKAVRTEVSP-CTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118
Query: 507 HETKTVRKGRKKKIDGDEKKDNKSIGNVVRSQKSDSKRLNLEKRIALRLNREARVHSAAK 686
+ R+ ++K +G ++ ++++ +VR++ +KRL+LEKRI+LR+ E ++ S+A
Sbjct: 119 GVIRRGRQRKRKISEGGKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSAG 178
Query: 687 RRKLSGENEIEKIDRLVREYSVFTDLVSLDWKKMKIPPVLSSSEHTWLFKLMQPMKAILS 866
+RK +NE EKID LVREYS TDLVSLDWKKMKIPPVL+SSEH WLFKLMQPMKA+L
Sbjct: 179 KRK-DRKNENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQ 237
Query: 867 VKDNLRNDLGREPTDGELAQATALNVVQLKKQIEVGQAARSKLIKHNLRLIFFVMNKYFQ 1046
VK++L+ +LG EPTD ELA+A ++V+Q++KQI VG+AAR+KLIKHNLRL+ FV+ KYFQ
Sbjct: 238 VKEHLQENLGGEPTDVELAKAINMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQ 297
Query: 1047 EFSNGPKFQDMCQAGVKGLITAIDRFEPKRKLRLSTYGLFWIRHSIIRSMTLSSFTKVSF 1226
+F+NG KFQD CQAGVKGLITAIDRFEPKR+ RLSTYGLFWIRH+IIRSMTLSSFT+VSF
Sbjct: 298 DFANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 357
Query: 1227 GLESVRADIQKAKLQLTFELHREPTEEEIIEKVGISIERYNEVMRASKPVLSLHARHSVT 1406
GLES+R++IQKAKL+L F+L R+P E+EIIEKV IS ERY+EV RASKPVLSLH+RH T
Sbjct: 358 GLESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTT 417
Query: 1407 QEEFISGITDTEGTGGDKKRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLGE 1586
QEEFI GI D + GGD +RQ A KPKESLV+RQRYGLDGKGDRTLGE
Sbjct: 418 QEEFIGGIADVD--GGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGE 475
Query: 1587 IAGNLNISREMVRKHEVKAFMKLKHPARVDYLRRYIL 1697
IAGNLNISREMVRKHEVKA MKLKHP RVDYLRRY++
Sbjct: 476 IAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYVV 512
>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 501
Score = 619 bits (1595), Expect = e-174
Identities = 328/520 (63%), Positives = 399/520 (76%), Gaps = 3/520 (0%)
Frame = +3
Query: 147 MGVMTVSSSVARTPLGSSTRLSRYSFPTKRASVTMFKTDKPKNKALVAPKEVVSSAIEKS 326
MGV+T SSS ARTPLG S + S Y KR+ V FK DK + LV P+E IE S
Sbjct: 1 MGVVTASSSAARTPLGLSLKFSTYRSTVKRSLVVAFKEDKANDIILVPPRERTPLPIETS 60
Query: 327 EGKRKILRQAKKPLERVQAFSVAEAPSCPLDLDYFEAAAKLENIYKLSPAPEVYDDQEKV 506
+GK++ + + E S L++DY EAAAKLENIYKLSPA + D V
Sbjct: 61 KGKKR------------RGKTNREVSSGTLEVDYNEAAAKLENIYKLSPATDTSD----V 104
Query: 507 HETKTVRKGRKKKI---DGDEKKDNKSIGNVVRSQKSDSKRLNLEKRIALRLNREARVHS 677
+RKGR++K +GDEK +N++ +VR++ +KRL+L+KRIAL+ N E V
Sbjct: 105 DINGLIRKGRQRKRKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVG 164
Query: 678 AAKRRKLSGENEIEKIDRLVREYSVFTDLVSLDWKKMKIPPVLSSSEHTWLFKLMQPMKA 857
+++K S ++ EKI+ LVR YS T+LVSLDW+KMKIPPVL S+EH WLFKLMQPMK
Sbjct: 165 PIRKKKDSKDDN-EKIEELVRTYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKT 223
Query: 858 ILSVKDNLRNDLGREPTDGELAQATALNVVQLKKQIEVGQAARSKLIKHNLRLIFFVMNK 1037
+L VK +L+ +LGR+PTDGELA+AT +NV +++KQ+EVG+AAR+KLIKHNLRL+ FVMNK
Sbjct: 224 LLPVKADLQKNLGRDPTDGELAEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNK 283
Query: 1038 YFQEFSNGPKFQDMCQAGVKGLITAIDRFEPKRKLRLSTYGLFWIRHSIIRSMTLSSFTK 1217
YFQ+F+NGP+FQD+CQAGVKGLITAIDRFEP+R+ +LSTY LFWIRH+IIRSMTLSSFTK
Sbjct: 284 YFQDFANGPRFQDLCQAGVKGLITAIDRFEPQRRFQLSTYSLFWIRHAIIRSMTLSSFTK 343
Query: 1218 VSFGLESVRADIQKAKLQLTFELHREPTEEEIIEKVGISIERYNEVMRASKPVLSLHARH 1397
VSFGLESVR +IQKAKL+L EL R PTEEEIIE+VGIS ERY+EV+RA+KP LSLHARH
Sbjct: 344 VSFGLESVRTEIQKAKLELLIELQRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARH 403
Query: 1398 SVTQEEFISGITDTEGTGGDKKRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRT 1577
+VTQEEFI+GITD + GGD +RQPA KPKESLVIRQRYGLDGKGDRT
Sbjct: 404 AVTQEEFINGITDID--GGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRT 461
Query: 1578 LGEIAGNLNISREMVRKHEVKAFMKLKHPARVDYLRRYIL 1697
LGEIAGNLNISREMVRK+EVKA MKLKHPARVDYLRRY++
Sbjct: 462 LGEIAGNLNISREMVRKYEVKALMKLKHPARVDYLRRYVV 501