BLASTX nr result

ID: Bupleurum21_contig00011909 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00011909
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329210.1| predicted protein [Populus trichocarpa] gi|2...   142   2e-32
ref|NP_192749.2| RNA recognition motif-containing protein [Arabi...   141   6e-32
gb|ABC86742.1| RNA recognition motif-containing protein [Vitis p...   139   2e-31
ref|XP_002271789.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop...   139   2e-31
ref|XP_003556209.1| PREDICTED: uncharacterized protein LOC100803...   139   3e-31

>ref|XP_002329210.1| predicted protein [Populus trichocarpa] gi|222870991|gb|EEF08122.1|
           predicted protein [Populus trichocarpa]
          Length = 195

 Score =  142 bits (359), Expect = 2e-32
 Identities = 68/81 (83%), Positives = 76/81 (93%)
 Frame = +1

Query: 73  MAGNRDATVFIGNLDERVSDRVLYDILIQAGRVVDLHVPRDRETDRPKGIAFAEYESEEI 252
           M+G    +++IGNLDERVSDRVLYDILIQAGRVVDLH+PRDRETD+PKG AFAEYE+EEI
Sbjct: 1   MSGPSSCSIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDRETDKPKGYAFAEYETEEI 60

Query: 253 ADYAVKLFSGLVTLYNRTLRF 315
           ADYAVKLFSGLVTLYNRTL+F
Sbjct: 61  ADYAVKLFSGLVTLYNRTLKF 81


>ref|NP_192749.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|26453246|dbj|BAC43696.1| unknown protein [Arabidopsis
           thaliana] gi|28372886|gb|AAO39925.1| At4g10100
           [Arabidopsis thaliana] gi|332657441|gb|AEE82841.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 173

 Score =  141 bits (355), Expect = 6e-32
 Identities = 65/81 (80%), Positives = 77/81 (95%)
 Frame = +1

Query: 73  MAGNRDATVFIGNLDERVSDRVLYDILIQAGRVVDLHVPRDRETDRPKGIAFAEYESEEI 252
           M+G  + TV+IGN+DERVSDRVLYDI+IQAGRV+DLH+PRD+ETD+PKG AFAEYE+EEI
Sbjct: 1   MSGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEI 60

Query: 253 ADYAVKLFSGLVTLYNRTLRF 315
           ADYAVKLFSGLV+LYNRTL+F
Sbjct: 61  ADYAVKLFSGLVSLYNRTLKF 81


>gb|ABC86742.1| RNA recognition motif-containing protein [Vitis pseudoreticulata]
          Length = 194

 Score =  139 bits (350), Expect = 2e-31
 Identities = 67/81 (82%), Positives = 75/81 (92%)
 Frame = +1

Query: 73  MAGNRDATVFIGNLDERVSDRVLYDILIQAGRVVDLHVPRDRETDRPKGIAFAEYESEEI 252
           M+     +V+IGNLDERVSDRVLYDILIQAGRVVDL++PRD+ETDRPKG AFAEYE+EEI
Sbjct: 1   MSAKSGCSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDRPKGFAFAEYETEEI 60

Query: 253 ADYAVKLFSGLVTLYNRTLRF 315
           ADYAVKLFSGLVTLYNRTL+F
Sbjct: 61  ADYAVKLFSGLVTLYNRTLKF 81


>ref|XP_002271789.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
           gi|297734803|emb|CBI17037.3| unnamed protein product
           [Vitis vinifera]
          Length = 194

 Score =  139 bits (350), Expect = 2e-31
 Identities = 67/81 (82%), Positives = 75/81 (92%)
 Frame = +1

Query: 73  MAGNRDATVFIGNLDERVSDRVLYDILIQAGRVVDLHVPRDRETDRPKGIAFAEYESEEI 252
           M+     +V+IGNLDERVSDRVLYDILIQAGRVVDL++PRD+ETDRPKG AFAEYE+EEI
Sbjct: 1   MSAKSGCSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDRPKGFAFAEYETEEI 60

Query: 253 ADYAVKLFSGLVTLYNRTLRF 315
           ADYAVKLFSGLVTLYNRTL+F
Sbjct: 61  ADYAVKLFSGLVTLYNRTLKF 81


>ref|XP_003556209.1| PREDICTED: uncharacterized protein LOC100803118 [Glycine max]
          Length = 196

 Score =  139 bits (349), Expect = 3e-31
 Identities = 63/81 (77%), Positives = 78/81 (96%)
 Frame = +1

Query: 73  MAGNRDATVFIGNLDERVSDRVLYDILIQAGRVVDLHVPRDRETDRPKGIAFAEYESEEI 252
           M+GN + +V+IGNLDERV+DRVLYDILIQAGRVVDLH+P+D+E+++PKG AFAEYE+EEI
Sbjct: 1   MSGNSNCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEI 60

Query: 253 ADYAVKLFSGLVTLYNRTLRF 315
           ADYAV+LFSGL+TLYNRTL+F
Sbjct: 61  ADYAVRLFSGLITLYNRTLKF 81


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