BLASTX nr result

ID: Bupleurum21_contig00011819 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00011819
         (1363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635247.1| PREDICTED: uncharacterized protein LOC100854...   159   2e-36
emb|CBI23464.3| unnamed protein product [Vitis vinifera]              159   2e-36
emb|CAN68806.1| hypothetical protein VITISV_001078 [Vitis vinifera]   157   6e-36
ref|XP_002304286.1| predicted protein [Populus trichocarpa] gi|2...   152   2e-34
ref|XP_002530663.1| retinoblastoma-binding protein, putative [Ri...   149   2e-33

>ref|XP_003635247.1| PREDICTED: uncharacterized protein LOC100854867 [Vitis vinifera]
          Length = 823

 Score =  159 bits (401), Expect = 2e-36
 Identities = 131/407 (32%), Positives = 169/407 (41%), Gaps = 18/407 (4%)
 Frame = +3

Query: 27   RVP---SEMQWSSSQDFPADNYMMPMGPSAYTPYWNXXXXXXXXXXXXXXXXXXXXXXXX 197
            RVP   +++QW S+QD  A+NYMMPM P+ Y PYWN                        
Sbjct: 483  RVPVNAADIQWKSTQDLAAENYMMPMDPT-YAPYWN--GMQPGMDGFMNPYAGAMPYMGY 539

Query: 198  XXXXMDIPCGGLFPQDPYGPPLNMMP-FPPQRNLAGYGMNFNGRPPVMSRDEFEARKVDL 374
                +D+P GG+ PQ P+G P  M+P  PPQR+LA +GM  N  PPVMSR+EFEARK DL
Sbjct: 540  GYNTLDMPFGGVLPQGPFGAPGYMLPVVPPQRDLADFGMGLNAAPPVMSREEFEARKADL 599

Query: 375  VRRRELERHGESLDLRKERESREATXXXXXXXXXXXXXXTLPPRSHANQPRRHSRDPEPQ 554
             RRRE ER GES +  K+RE                     P  S A+    H R P P+
Sbjct: 600  RRRRESERRGESKEFPKDREYGREGSMGGDVSTMKPKPKLAPQSSSAD---HHHRRPRPE 656

Query: 555  RTPSARKAEYDRYNEEEHPRHHHEKAKYDHHNEDELPHRHHRQKQXXXXXXXXXXXXXXX 734
            R+   R        + E PR    K+++ HH   +                         
Sbjct: 657  RSSPERPT-----RDVEAPRPSKRKSEHHHHRPSD------------------------- 686

Query: 735  XXXXXXXXXXXXXXXXXXLTSSKPPLRPASTDPPLKSSTMSD-KEKRSVFSRISFPXXXX 911
                               +S++PP   A+      S +++D K K SVFSRISFP    
Sbjct: 687  -------------------SSARPPPSAAAE----SSRSLADRKAKPSVFSRISFPEEEP 723

Query: 912  XXXXXXXXXXTVSSSSPAASEEYHDDHHXXXXXXXXXXXXXXXXXXXNVEDRYQYGGEYE 1091
                         S +P+AS   +  H                        R     EYE
Sbjct: 724  TKKRKL-------SETPSASAIPNGQHEDWKVSPSSA-----------AASRKSSVTEYE 765

Query: 1092 SSEDDDRHFKRKPSTYV-------------AVDEEKHSSRGSKEREK 1193
            SS D+DRHFKRKPS Y                 E +HSSRGS+ERE+
Sbjct: 766  SS-DEDRHFKRKPSRYEPSPPAPAAKEAEWEEKEARHSSRGSRERER 811


>emb|CBI23464.3| unnamed protein product [Vitis vinifera]
          Length = 828

 Score =  159 bits (401), Expect = 2e-36
 Identities = 131/407 (32%), Positives = 169/407 (41%), Gaps = 18/407 (4%)
 Frame = +3

Query: 27   RVP---SEMQWSSSQDFPADNYMMPMGPSAYTPYWNXXXXXXXXXXXXXXXXXXXXXXXX 197
            RVP   +++QW S+QD  A+NYMMPM P+ Y PYWN                        
Sbjct: 488  RVPVNAADIQWKSTQDLAAENYMMPMDPT-YAPYWN--GMQPGMDGFMNPYAGAMPYMGY 544

Query: 198  XXXXMDIPCGGLFPQDPYGPPLNMMP-FPPQRNLAGYGMNFNGRPPVMSRDEFEARKVDL 374
                +D+P GG+ PQ P+G P  M+P  PPQR+LA +GM  N  PPVMSR+EFEARK DL
Sbjct: 545  GYNTLDMPFGGVLPQGPFGAPGYMLPVVPPQRDLADFGMGLNAAPPVMSREEFEARKADL 604

Query: 375  VRRRELERHGESLDLRKERESREATXXXXXXXXXXXXXXTLPPRSHANQPRRHSRDPEPQ 554
             RRRE ER GES +  K+RE                     P  S A+    H R P P+
Sbjct: 605  RRRRESERRGESKEFPKDREYGREGSMGGDVSTMKPKPKLAPQSSSAD---HHHRRPRPE 661

Query: 555  RTPSARKAEYDRYNEEEHPRHHHEKAKYDHHNEDELPHRHHRQKQXXXXXXXXXXXXXXX 734
            R+   R        + E PR    K+++ HH   +                         
Sbjct: 662  RSSPERPT-----RDVEAPRPSKRKSEHHHHRPSD------------------------- 691

Query: 735  XXXXXXXXXXXXXXXXXXLTSSKPPLRPASTDPPLKSSTMSD-KEKRSVFSRISFPXXXX 911
                               +S++PP   A+      S +++D K K SVFSRISFP    
Sbjct: 692  -------------------SSARPPPSAAAE----SSRSLADRKAKPSVFSRISFPEEEP 728

Query: 912  XXXXXXXXXXTVSSSSPAASEEYHDDHHXXXXXXXXXXXXXXXXXXXNVEDRYQYGGEYE 1091
                         S +P+AS   +  H                        R     EYE
Sbjct: 729  TKKRKL-------SETPSASAIPNGQHEDWKVSPSSA-----------AASRKSSVTEYE 770

Query: 1092 SSEDDDRHFKRKPSTYV-------------AVDEEKHSSRGSKEREK 1193
            SS D+DRHFKRKPS Y                 E +HSSRGS+ERE+
Sbjct: 771  SS-DEDRHFKRKPSRYEPSPPAPAAKEAEWEEKEARHSSRGSRERER 816


>emb|CAN68806.1| hypothetical protein VITISV_001078 [Vitis vinifera]
          Length = 828

 Score =  157 bits (397), Expect = 6e-36
 Identities = 130/407 (31%), Positives = 168/407 (41%), Gaps = 18/407 (4%)
 Frame = +3

Query: 27   RVP---SEMQWSSSQDFPADNYMMPMGPSAYTPYWNXXXXXXXXXXXXXXXXXXXXXXXX 197
            RVP   +++QW S+QD  A+NYMMPM P+ Y PYWN                        
Sbjct: 488  RVPVNAADIQWKSTQDLAAENYMMPMDPT-YAPYWN--GMQPGMDGFMNPYAGAMPYMGY 544

Query: 198  XXXXMDIPCGGLFPQDPYGPPLNMMP-FPPQRNLAGYGMNFNGRPPVMSRDEFEARKVDL 374
                +D+P GG+ PQ P+G P  M+P  PPQR+LA +GM  N  PP MSR+EFEARK DL
Sbjct: 545  GYNTLDMPFGGVLPQGPFGAPGYMLPVVPPQRDLADFGMGLNAAPPXMSREEFEARKADL 604

Query: 375  VRRRELERHGESLDLRKERESREATXXXXXXXXXXXXXXTLPPRSHANQPRRHSRDPEPQ 554
             RRRE ER GES +  K+RE                     P  S A+    H R P P+
Sbjct: 605  RRRRESERRGESKEFPKDREYXREGSMGGDVSTMKPKPKLAPQSSSAD---HHHRRPRPE 661

Query: 555  RTPSARKAEYDRYNEEEHPRHHHEKAKYDHHNEDELPHRHHRQKQXXXXXXXXXXXXXXX 734
            R+   R        + E PR    K+++ HH   +                         
Sbjct: 662  RSSPERPT-----RDVEAPRPSKRKSEHHHHRPSD------------------------- 691

Query: 735  XXXXXXXXXXXXXXXXXXLTSSKPPLRPASTDPPLKSSTMSD-KEKRSVFSRISFPXXXX 911
                               +S++PP   A+      S +++D K K SVFSRISFP    
Sbjct: 692  -------------------SSARPPPSAAAE----SSRSLADRKAKPSVFSRISFPEEEP 728

Query: 912  XXXXXXXXXXTVSSSSPAASEEYHDDHHXXXXXXXXXXXXXXXXXXXNVEDRYQYGGEYE 1091
                         S +P+AS   +  H                        R     EYE
Sbjct: 729  TKKRKL-------SETPSASAIPNGQHEDWKVSPSSA-----------AASRKSSVTEYE 770

Query: 1092 SSEDDDRHFKRKPSTYV-------------AVDEEKHSSRGSKEREK 1193
            SS D+DRHFKRKPS Y                 E +HSSRGS+ERE+
Sbjct: 771  SS-DEDRHFKRKPSRYEPSPPAPAAKEAEWEEKEARHSSRGSRERER 816


>ref|XP_002304286.1| predicted protein [Populus trichocarpa] gi|222841718|gb|EEE79265.1|
            predicted protein [Populus trichocarpa]
          Length = 537

 Score =  152 bits (384), Expect = 2e-34
 Identities = 132/420 (31%), Positives = 177/420 (42%), Gaps = 31/420 (7%)
 Frame = +3

Query: 24   IRVPSEMQWSSSQDFPADNYMMPMGPSAYTPYWNXXXXXXXXXXXXXXXXXXXXXXXXXX 203
            +R+P    W +SQD  A+++MMPMGPSA+ PYW+                          
Sbjct: 164  VRMPPNDLWKASQDLAAESFMMPMGPSAFNPYWS--GMQTGMEGYMAPYPGPMPFMGYGL 221

Query: 204  XXMDIPCGGLFPQDPYGPPLNMMP-FPPQRNLAGYGMNFNGRPPVMSRDEFEARKVDLVR 380
              +D+P GG+ P DP+G    MMP  PPQR+LA +GMN N RPP+MSR+EFEARK D+ R
Sbjct: 222  SPLDMPYGGVMPPDPFGAQSYMMPAVPPQRDLAEFGMNMNLRPPLMSREEFEARKADVRR 281

Query: 381  RRELERHGESLDLRKERESREATXXXXXXXXXXXXXXTLPPRSHANQPRRHSRDPEPQRT 560
            RRE ER  E    R     RE +                 P+S A+    H+R    + +
Sbjct: 282  RRENERRAEREFSRDWDPGREVSGGGDVSSMKSKSI----PQSSASGDPHHNRRRSERLS 337

Query: 561  PSARKAEYD----RYNEEEHPRHHH---EKAKYDHHNED--ELPHRHHRQKQXXXXXXXX 713
            P     E D    R ++ +  RH H   +   +D+H  D  +  HRHH + +        
Sbjct: 338  PERSAREIDPLPPRPSKRKSDRHEHGDRDADDFDYHERDRSDRDHRHHHRHRS------- 390

Query: 714  XXXXXXXXXXXXXXXXXXXXXXXXXLTSSKPPLRPASTDPPLKSSTMSD-KEKRSVFSRI 890
                                       SS   +   +T PP  S+T++D K+K SVFSRI
Sbjct: 391  --------------------------ESSSKAVSETTTKPP--STTVTDRKQKVSVFSRI 422

Query: 891  SFPXXXXXXXXXXXXXXTVSSSSPAA------SEEYHDDHHXXXXXXXXXXXXXXXXXXX 1052
            SFP               VSSSS AA             HH                   
Sbjct: 423  SFP----AEGEPTSKKRKVSSSSEAAPAATGGGGPLSSTHH--KSSSPVNNGYYDDYKSS 476

Query: 1053 NVEDRYQYGG-------EYESSEDDDRHFKRKPSTY-------VAVDEEKHSSRGSKERE 1190
            +V+ R            +YESS DDDRHFKRKPS Y          +E+   SR  K+R+
Sbjct: 477  SVKTRKSSSSVAATAAMDYESS-DDDRHFKRKPSRYEPSPPPPAEWEEDVKHSRRDKDRK 535


>ref|XP_002530663.1| retinoblastoma-binding protein, putative [Ricinus communis]
            gi|223529796|gb|EEF31732.1| retinoblastoma-binding
            protein, putative [Ricinus communis]
          Length = 868

 Score =  149 bits (375), Expect = 2e-33
 Identities = 126/417 (30%), Positives = 162/417 (38%), Gaps = 28/417 (6%)
 Frame = +3

Query: 24   IRVPSEMQWSSSQDFPADNYMMPMGPSAYTPYWNXXXXXXXXXXXXXXXXXXXXXXXXXX 203
            +R+P    W +SQD   ++YMMP+GPSAY PYWN                          
Sbjct: 483  VRMPPNDMWKASQDLATESYMMPLGPSAYNPYWNGMQPGMESYMNPMNPFAAPMPFMGYG 542

Query: 204  XX-MDIPCGGLFPQDPYGPPLNMMPF-PPQRNLAGYGMNFNGRPPVMSRDEFEARKVDLV 377
               +D+P GG+ P DP+     MMP  PPQR+LA +GM  N  PP MSR+EFEARK DL 
Sbjct: 543  MGPLDMPFGGVMPPDPFSAQGYMMPVVPPQRDLADFGMGMNAGPPAMSREEFEARKADLR 602

Query: 378  RRRELERHGESLDLRKERESREATXXXXXXXXXXXXXXTLPP-----------RSHANQP 524
            RRRE ER  E  +  ++RE                     P            RS  + P
Sbjct: 603  RRRENERRAER-EFPRDREFGREVSSGVDISSMKSKPIPQPSRSGDPHPHHRHRSERSSP 661

Query: 525  RRHSRDPEPQR----TPSARKAEYDRYNEEEHPRHHHEKAKYDHHNEDELPHRHHRQKQX 692
             R  RD EP       PS RKA++   + +    HH ++   +   E E  HRHH Q   
Sbjct: 662  ERPVRDLEPPAPPPPRPSKRKADHHDRDRDRDYDHHDDR---ERERERERHHRHHHQHH- 717

Query: 693  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSSKPPLRPASTDPPLKSSTMSDKEKR 872
                                              +++   +P ST      +    K K 
Sbjct: 718  -----------------------HRSDSSAKAAAAAETAPKPTSTAAMATLTAAERKHKA 754

Query: 873  SVFSRISFPXXXXXXXXXXXXXXTVSSSSPAASEEYHDDH---HXXXXXXXXXXXXXXXX 1043
            SVFSRISFP              + SSS  AA    H      +                
Sbjct: 755  SVFSRISFP---EGGETKKRKVSSPSSSGEAAGGHQHKSSSTVYNNGTVKAASVSTSGGG 811

Query: 1044 XXXNVEDRYQYGGEYESSEDDDRHFKRKPSTYVA--------VDEEKHSSRGSKERE 1190
                         +YESS DD+RHFKRKPS Y           DE KH SR S++R+
Sbjct: 812  GGRKSSSGAAAAVDYESS-DDERHFKRKPSRYEPSPPPPADWEDEIKH-SRSSRDRK 866


Top