BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00011781
         (580 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521239.1| pentatricopeptide repeat-containing protein,...   126   3e-27
ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
ref|XP_003592666.1| Pentatricopeptide repeat-containing protein ...   110   2e-22
ref|XP_003555205.1| PREDICTED: pentatricopeptide repeat-containi...   103   2e-20
dbj|BAF01049.1| hypothetical protein [Arabidopsis thaliana]           101   8e-20

>ref|XP_002521239.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539507|gb|EEF41095.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 460

 Score =  126 bits (316), Expect = 3e-27
 Identities = 64/125 (51%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
 Frame = -1

Query: 373 ALSKQGQRFFTSLATSDT-GDPLVADRLIRKFIXXXXXXXXXXXXSHLLTPNASHSNLSS 197
           ALSKQGQRF +SLA + T GD +  +RLI+KF+            SHLL P++SHS+LSS
Sbjct: 44  ALSKQGQRFLSSLAIATTKGDTVATNRLIKKFVAASPKSIALDALSHLLNPHSSHSHLSS 103

Query: 196 IAFVFYSLLSKAPWFTWNPKLVADVIALLYKQERFTEADALISETVSYLGLQERELCTFY 17
           +AF  Y  +++A WF WNPKLVADV+A L KQ R+ E+  L+S+++S L ++ER+L  FY
Sbjct: 104 LAFTLYLKIAEARWFQWNPKLVADVVAFLDKQGRYDESATLVSDSISKLQVKERDLARFY 163

Query: 16  CCLIE 2
           C L+E
Sbjct: 164 CNLVE 168


>ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17033
           [Vitis vinifera] gi|297744557|emb|CBI37819.3| unnamed
           protein product [Vitis vinifera]
          Length = 435

 Score =  125 bits (315), Expect = 4e-27
 Identities = 71/149 (47%), Positives = 91/149 (61%)
 Frame = -1

Query: 448 LSLPHSWTSLRFEQSLHRLRAPPSCALSKQGQRFFTSLATSDTGDPLVADRLIRKFIXXX 269
           +S P  W         HR      CALSKQGQ F +S+A     DP  ++RLI KFI   
Sbjct: 7   VSRPQPWN--------HRSPLLIQCALSKQGQLFLSSVAR----DPSASNRLICKFIASS 54

Query: 268 XXXXXXXXXSHLLTPNASHSNLSSIAFVFYSLLSKAPWFTWNPKLVADVIALLYKQERFT 89
                    SHLL+P  +H  LSS+A   YS +S+A WF+WNPKL+ADVIALLYKQ +  
Sbjct: 55  SKSIALNALSHLLSPTTTHPYLSSLALPLYSRISEASWFSWNPKLIADVIALLYKQGQLK 114

Query: 88  EADALISETVSYLGLQERELCTFYCCLIE 2
           EA+ L+SET+  LG +ER+L +FYC LI+
Sbjct: 115 EAETLVSETLIKLGSRERDLVSFYCNLID 143


>ref|XP_003592666.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355481714|gb|AES62917.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 454

 Score =  110 bits (274), Expect = 2e-22
 Identities = 63/173 (36%), Positives = 98/173 (56%)
 Frame = -1

Query: 520 EKKRARQLEIIHRSLNSSPSMEALLSLPHSWTSLRFEQSLHRLRAPPSCALSKQGQRFFT 341
           E+K  R +     +L      +  L  P   T LR +++ + +R    C L+KQGQRF T
Sbjct: 2   EEKEGRNIRAERMTLRFQ---QCPLPPPQLQTQLRLKKN-NTIR----CTLTKQGQRFLT 53

Query: 340 SLATSDTGDPLVADRLIRKFIXXXXXXXXXXXXSHLLTPNASHSNLSSIAFVFYSLLSKA 161
            L+T++T      + LIRKF+            +HLL+P  +H  LSS+A   Y+ +S++
Sbjct: 54  KLSTTNTN----TENLIRKFVQSSPKSVLLSTLTHLLSPTTAHHPLSSLALPLYTRISES 109

Query: 160 PWFTWNPKLVADVIALLYKQERFTEADALISETVSYLGLQERELCTFYCCLIE 2
            W+TWNP + AD+I LL+K +R+TE+  LISE  S L  +ER++  FY  L++
Sbjct: 110 QWYTWNPTIFADLITLLHKHQRYTESQTLISEATSKLNNKERDIVLFYAKLLD 162


>ref|XP_003555205.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17033-like [Glycine max]
          Length = 457

 Score =  103 bits (258), Expect = 2e-20
 Identities = 58/146 (39%), Positives = 85/146 (58%)
 Frame = -1

Query: 439 PHSWTSLRFEQSLHRLRAPPSCALSKQGQRFFTSLATSDTGDPLVADRLIRKFIXXXXXX 260
           PH   SL ++    R +    C L+KQGQRF T L TS       AD LIR+F+      
Sbjct: 13  PHETLSLSWKLKQPRPQLQARCTLTKQGQRFLTKLTTSSA----TADNLIRRFLLASPKS 68

Query: 259 XXXXXXSHLLTPNASHSNLSSIAFVFYSLLSKAPWFTWNPKLVADVIALLYKQERFTEAD 80
                 SHLL+P+ S+ +LSS+A   Y+ +S+APWF+WNP  VA++ ALL+      +++
Sbjct: 69  VVLSTLSHLLSPSTSYPHLSSLASQLYTGISQAPWFSWNPTTVAELAALLHSLGHHAQSE 128

Query: 79  ALISETVSYLGLQERELCTFYCCLIE 2
           +LIS+  S L  ++R+L  FY  LI+
Sbjct: 129 SLISDASSRLQSRQRDLVLFYGKLID 154


>dbj|BAF01049.1| hypothetical protein [Arabidopsis thaliana]
          Length = 501

 Score =  101 bits (252), Expect = 8e-20
 Identities = 55/124 (44%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
 Frame = -1

Query: 370 LSKQGQRFFTSLATSD-TGDPLVADRLIRKFIXXXXXXXXXXXXSHLLTPNASHSNLSSI 194
           L K G RF +SL++    GDP   +R I+KF+            SHLL+   SH +LS  
Sbjct: 85  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 144

Query: 193 AFVFYSLLSKAPWFTWNPKLVADVIALLYKQERFTEADALISETVSYLGLQERELCTFYC 14
           A   YS +++A WF WNPKL+A++IALL KQERF E++ L+S  VS L   ER+   F C
Sbjct: 145 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 204

Query: 13  CLIE 2
            L+E
Sbjct: 205 NLVE 208