BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00011754
         (524 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containi...   133   1e-29
ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containi...   128   6e-28
ref|XP_002530052.1| pentatricopeptide repeat-containing protein,...   121   7e-26
ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containi...   118   5e-25
ref|XP_002889980.1| pentatricopeptide repeat-containing protein ...   116   2e-24

>ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
           gi|296081374|emb|CBI16807.3| unnamed protein product
           [Vitis vinifera]
          Length = 519

 Score =  133 bits (335), Expect = 1e-29
 Identities = 69/91 (75%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
 Frame = -2

Query: 523 TPDVVSYNALINGLCRASKVTEAMVLYAEMQTKGAHPDELTFKLIIRGLIQEKKLSIACT 344
           TPDVVSYNALINGLCRAS+V+EAM LY +M T G  PDE+TFKLII GLI EKKLS+AC 
Sbjct: 426 TPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACR 485

Query: 343 VWDQMMENGFTLDRDVSDTLVTAM-SEDASC 254
           VWDQMME GFTLD  VS+TLV A+ S DASC
Sbjct: 486 VWDQMMEKGFTLDGAVSETLVNAIHSNDASC 516



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 37/98 (37%), Positives = 53/98 (54%)
 Frame = -2

Query: 517 DVVSYNALINGLCRASKVTEAMVLYAEMQTKGAHPDELTFKLIIRGLIQEKKLSIACTVW 338
           DVVSYN +I  LC AS    A  L+ EM  KG  PD +TF ++I+  ++E   +IA  + 
Sbjct: 323 DVVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLL 382

Query: 337 DQMMENGFTLDRDVSDTLVTAMSEDASCGKKHG*FCNL 224
           DQM   G   DR +  T+V  + +    G  H  FC++
Sbjct: 383 DQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDM 420



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 26/86 (30%), Positives = 44/86 (51%)
 Frame = -2

Query: 520 PDVVSYNALINGLCRASKVTEAMVLYAEMQTKGAHPDELTFKLIIRGLIQEKKLSIACTV 341
           PD+ +YN  +N LC  +++  A+ +   M  KG  PD +T+ ++I GL +  +   A  +
Sbjct: 112 PDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEI 171

Query: 340 WDQMMENGFTLDRDVSDTLVTAMSED 263
           W  M+  GF+ D      LV  +  D
Sbjct: 172 WRNMVRKGFSPDEKACRALVLGLCHD 197


>ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
           gi|449494962|ref|XP_004159696.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  128 bits (321), Expect = 6e-28
 Identities = 61/89 (68%), Positives = 79/89 (88%), Gaps = 1/89 (1%)
 Frame = -2

Query: 523 TPDVVSYNALINGLCRASKVTEAMVLYAEMQTKGAHPDELTFKLIIRGLIQEKKLSIACT 344
           +PDVVSYNALINGLC+ASKV+EAM+LY EMQ +G +PDE+TFKLII GL+++K+LS+AC 
Sbjct: 425 SPDVVSYNALINGLCKASKVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLRKKELSLACQ 484

Query: 343 VWDQMMENGFTLDRDVSDTLVTAM-SEDA 260
           VWDQMME G+TLD+ +S+TL+ A+ S DA
Sbjct: 485 VWDQMMEKGYTLDKFLSETLIKAIRSRDA 513


>ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530468|gb|EEF32352.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 554

 Score =  121 bits (303), Expect = 7e-26
 Identities = 57/93 (61%), Positives = 76/93 (81%), Gaps = 1/93 (1%)
 Frame = -2

Query: 523 TPDVVSYNALINGLCRASKVTEAMVLYAEMQTKGAHPDELTFKLIIRGLIQEKKLSIACT 344
           +PDV+S+NALING C+ S+V+EAM LY EMQ +G++PDE+T+KLII GLI+EKK+SIAC 
Sbjct: 427 SPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACM 486

Query: 343 VWDQMMENGFTLDRDVSDTLVTAMS-EDASCGK 248
           VW QMM+ GFTLDR ++ TL+   S E+AS  +
Sbjct: 487 VWGQMMDKGFTLDRAIAQTLIRGNSIENASTSR 519



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 32/98 (32%), Positives = 49/98 (50%)
 Frame = -2

Query: 517 DVVSYNALINGLCRASKVTEAMVLYAEMQTKGAHPDELTFKLIIRGLIQEKKLSIACTVW 338
           DVVSYN +I   C+    T A  L+ EM  KG  PD +TF + I+  + +   +IA  + 
Sbjct: 324 DVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLL 383

Query: 337 DQMMENGFTLDRDVSDTLVTAMSEDASCGKKHG*FCNL 224
           DQM E G + D     T++  + +       H  FC++
Sbjct: 384 DQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDM 421


>ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  118 bits (296), Expect = 5e-25
 Identities = 53/83 (63%), Positives = 71/83 (85%)
 Frame = -2

Query: 520 PDVVSYNALINGLCRASKVTEAMVLYAEMQTKGAHPDELTFKLIIRGLIQEKKLSIACTV 341
           PDV+SYNAL+NG C+ S+V +AM L+ EMQ+KG +PDE+T+KLI+ GLI+ KK+S+AC V
Sbjct: 432 PDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRV 491

Query: 340 WDQMMENGFTLDRDVSDTLVTAM 272
           WDQMME GFTL+R +S+TLV A+
Sbjct: 492 WDQMMERGFTLNRHLSETLVNAI 514



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 25/83 (30%), Positives = 46/83 (55%)
 Frame = -2

Query: 520 PDVVSYNALINGLCRASKVTEAMVLYAEMQTKGAHPDELTFKLIIRGLIQEKKLSIACTV 341
           PD+ ++N  +N LCR +++  A+ L+  M +KG  PD +++ +II  L   K+   A  V
Sbjct: 117 PDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKV 176

Query: 340 WDQMMENGFTLDRDVSDTLVTAM 272
           W ++++ G + D      LV  +
Sbjct: 177 WRRLIDKGLSPDYKACVALVVGL 199


>ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335822|gb|EFH66239.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 517

 Score =  116 bits (291), Expect = 2e-24
 Identities = 56/83 (67%), Positives = 68/83 (81%)
 Frame = -2

Query: 523 TPDVVSYNALINGLCRASKVTEAMVLYAEMQTKGAHPDELTFKLIIRGLIQEKKLSIACT 344
           TPD +SYN+LI+GLCR+ +VTEA+ L+ +M+ K   PDELTFK II GLI+EKKLS A  
Sbjct: 427 TPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIREKKLSAAYK 486

Query: 343 VWDQMMENGFTLDRDVSDTLVTA 275
           VWDQMM+ GFTLDRDVSDTL+ A
Sbjct: 487 VWDQMMDKGFTLDRDVSDTLIKA 509



 Score = 61.6 bits (148), Expect = 7e-08
 Identities = 34/95 (35%), Positives = 53/95 (55%)
 Frame = -2

Query: 517 DVVSYNALINGLCRASKVTEAMVLYAEMQTKGAHPDELTFKLIIRGLIQEKKLSIACTVW 338
           DVVSY+ LI   CRAS   +A  L+ EM+ KG   + +TF  +I+  ++E   S+A  + 
Sbjct: 324 DVVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLL 383

Query: 337 DQMMENGFTLDRDVSDTLVTAMSEDASCGKKHG*F 233
           DQM E G + DR    T++  + +  +  K +G F
Sbjct: 384 DQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGIF 418