BLASTX nr result
ID: Bupleurum21_contig00011447
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00011447
(2435 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty... 894 0.0
gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymera... 867 0.0
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 864 0.0
gb|ABF67921.1| Ji1 putative pol protein [Zea mays] 860 0.0
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 858 0.0
>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
aspartic, catalytic [Medicago truncatula]
Length = 1715
Score = 894 bits (2311), Expect = 0.0
Identities = 440/790 (55%), Positives = 572/790 (72%), Gaps = 2/790 (0%)
Frame = -2
Query: 2434 RSDMGGEFKKD-FIPYCKERGIEHEFSAPRTPQQNGVVERKNRTLEDTARTLLQESKLPR 2258
RSD GGEF+ + F +C++ GI HEFS+PRTPQQNGVVERKNRTL++ ART++ E+ L +
Sbjct: 927 RSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAK 986
Query: 2257 KFWAEAVNTACYILNRVLIRPILKKTPYELLKSKTPNISYFKVFGSQCYVLKTLGKDGKF 2078
FWAEAVNT+CYI NR+ IRP+L+KT YEL K + PNISYF FG CY+L T KF
Sbjct: 987 HFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKF 1046
Query: 2077 DAKAYEAKFVGYSNTSRAYRVYNMSKRIVEESIHVTFKEANDDLPSDEEDAGTSSKVTNR 1898
DAKA F+GYS S+AYRVYN + VEES+HV F + + E+ + +
Sbjct: 1047 DAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSE 1106
Query: 1897 PAHMQPNPTEAGNQKDSQSSPAHTLMSTPEKDGSAQTPISPG-EVEDLVKSYEKMSINDI 1721
A P+++ + +S P + TPE + +++ SP + E + ++ + I
Sbjct: 1107 DASESDQPSDSEKYTEVESCPEAEI--TPEAESNSEAEPSPKVQNESASEDFQDNTQQVI 1164
Query: 1720 EKSTRTVKNHPPDLVIGDINDKIRTRRGKLNFCAYAAFLSQVEPKNADEALEDSDWIVAM 1541
+ + +HP +L+IG + RTR + LS +EPK +EAL D WI+AM
Sbjct: 1165 QPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAM 1224
Query: 1540 QEELNQFERCDVWELVKPPKDASVIGTKWVFKNKLDEHGNITRNKARLVAQGYNQQEGID 1361
QEELNQF+R DVW+LV P ++IGTKWVF+NKL+E G +TRNKARLVAQGY+QQEGID
Sbjct: 1225 QEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGID 1284
Query: 1360 YDQTYAPVARLEAIRMLLSFACFKGFKLYQMDVKSAFLNGYLKEVVYVKQPPGFESAEHL 1181
Y +T+APVARLEAIR+LLS+A G LYQMDVKSAFLNG ++E VYVKQPPGFE +H
Sbjct: 1285 YTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHP 1344
Query: 1180 DYVYRLKKALYGLKQAPRAWYERLSKFLLANGFIRGKIDPTLFTKTDKNNDMLVVQLYVD 1001
D+VY+LKK+LYGLKQAPRAWY+RLS FL+ N F RG++D TLF +T K D+L+VQ+YVD
Sbjct: 1345 DHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKK-DILIVQIYVD 1403
Query: 1000 DILFGATNESLCEWFSKCMHSEFDMSMMGELNYFLGLQIKQTKDGIYVHQSKYVKELLKR 821
DI+FG+TN SLC+ FSK M EF+MSMMGEL +FLG+QI Q+K+G+YVHQ+KY KELLK+
Sbjct: 1404 DIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKK 1463
Query: 820 FGFDSLKSKSTPMSQSTKLISDENGKDIDITKYRGMIGSLLYLTASRPDIMYSVCLCARF 641
F + K +TPM + L ++ G +D YRGMIGSLLYLTASRPDI++SVCLCARF
Sbjct: 1464 FKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARF 1523
Query: 640 QAKPKESHLTAVKRIFKYLSGTVNLGLFYPVTASFDLVGYSDADFAGSQVDRKSTSGTCA 461
Q+ P+ESHLTAVKRIF+YL GT NLGL Y + + L+G+ DAD+AG +++RKSTSG C
Sbjct: 1524 QSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQ 1583
Query: 460 FLGGSLVSWQSKKQNSVALSTTEGEYLAAGSCCAQILWMLQTLEDFGIKEGTIPIYCDNT 281
FLG +L+SW SK+Q ++A+ST E EY++A SCC Q+LWM LED+ I +IPIYCDNT
Sbjct: 1584 FLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNT 1643
Query: 280 STINISKNPILHSRTKHIEVRHHFLRDNVAQGKINLVFVPTEYQLADIFTKPLPEGRFQI 101
+ I +SKNPILHSR KHIE++HHF+RD V +G +++ F+ TE+Q ADIFTKPL RF
Sbjct: 1644 AVICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDF 1703
Query: 100 IRRELGMCMV 71
I++ L M V
Sbjct: 1704 IKKNLNMHFV 1713
>gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Medicago truncatula]
Length = 1654
Score = 867 bits (2239), Expect = 0.0
Identities = 432/790 (54%), Positives = 560/790 (70%), Gaps = 2/790 (0%)
Frame = -2
Query: 2434 RSDMGGEFKKD-FIPYCKERGIEHEFSAPRTPQQNGVVERKNRTLEDTARTLLQESKLPR 2258
RSD GGEF+ + F +C++ GI HEFS+PRTPQQNGVVERKNRTL++ ART++ E+ L +
Sbjct: 866 RSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAK 925
Query: 2257 KFWAEAVNTACYILNRVLIRPILKKTPYELLKSKTPNISYFKVFGSQCYVLKTLGKDGKF 2078
FWAEAVNT+CYI NR+ IRP+L+K Y L K + NISYF FG CY+L T KF
Sbjct: 926 HFWAEAVNTSCYIQNRIYIRPMLEKIAYGLFKGRRLNISYFHQFGCTCYILNTKDYLKKF 985
Query: 2077 DAKAYEAKFVGYSNTSRAYRVYNMSKRIVEESIHVTFKEANDDLPSDEEDAGTSSKVTNR 1898
D KA F+GYS S+AYRVYN VEES+HV F + + E+ + +
Sbjct: 986 DVKAQRGIFLGYSERSKAYRVYNSETHCVEESMHVKFDDREPGSKTPEQSESNAGTTDSE 1045
Query: 1897 PAHMQPNPTEAGNQKDSQSSPAHTLMSTPEKDGSAQTPISP-GEVEDLVKSYEKMSINDI 1721
A P+ + + +S P + TPE + +++ SP + E + ++ + I
Sbjct: 1046 DASESDQPSNSEKYTEVESYPEAEI--TPEVESNSEAEPSPIVQNESASEDFQDNTQQVI 1103
Query: 1720 EKSTRTVKNHPPDLVIGDINDKIRTRRGKLNFCAYAAFLSQVEPKNADEALEDSDWIVAM 1541
+ + +HP +L+IG + RTR LS +EPK +EAL D WI++M
Sbjct: 1104 QPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEETLIGLLSIIEPKTVEEALSDDGWILSM 1163
Query: 1540 QEELNQFERCDVWELVKPPKDASVIGTKWVFKNKLDEHGNITRNKARLVAQGYNQQEGID 1361
QEELNQF+R DVW+LV P ++IGTKWVF+NK +E G +TRNKARLVAQGY+QQEGID
Sbjct: 1164 QEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKQNEQGEVTRNKARLVAQGYSQQEGID 1223
Query: 1360 YDQTYAPVARLEAIRMLLSFACFKGFKLYQMDVKSAFLNGYLKEVVYVKQPPGFESAEHL 1181
Y +T+APVARLEAIR+LLS+A G LYQMDVKSA LNG ++E VYVKQPPGFE +H
Sbjct: 1224 YTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSALLNGVIEEEVYVKQPPGFEDLKHP 1283
Query: 1180 DYVYRLKKALYGLKQAPRAWYERLSKFLLANGFIRGKIDPTLFTKTDKNNDMLVVQLYVD 1001
D+VY+LKK+LYGLKQAPRAWY+RLS FL+ N F RG++D TLF +T K D+L+VQ+YVD
Sbjct: 1284 DHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKK-DILIVQIYVD 1342
Query: 1000 DILFGATNESLCEWFSKCMHSEFDMSMMGELNYFLGLQIKQTKDGIYVHQSKYVKELLKR 821
DI+FG+TN SLC+ FSK M EF+MSMMGEL +FL +QI Q+K+G+YVHQ+KY KELLK+
Sbjct: 1343 DIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLVIQINQSKEGVYVHQTKYTKELLKK 1402
Query: 820 FGFDSLKSKSTPMSQSTKLISDENGKDIDITKYRGMIGSLLYLTASRPDIMYSVCLCARF 641
F + K TPM + L ++ G +D YRGMIGSLLYLTASRPDI++SVCLCARF
Sbjct: 1403 FKLEDCKVMYTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARF 1462
Query: 640 QAKPKESHLTAVKRIFKYLSGTVNLGLFYPVTASFDLVGYSDADFAGSQVDRKSTSGTCA 461
Q+ P+ESHLTAVK IF+YL GT NLGL Y + + L+G+ DAD+AG +++RKSTSG C
Sbjct: 1463 QSDPRESHLTAVKIIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQ 1522
Query: 460 FLGGSLVSWQSKKQNSVALSTTEGEYLAAGSCCAQILWMLQTLEDFGIKEGTIPIYCDNT 281
FLG +L+SW SK+Q ++A+ST E EY++A SCC Q+LWM LED+ I +IPIYCDNT
Sbjct: 1523 FLGENLISWASKRQVTIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNT 1582
Query: 280 STINISKNPILHSRTKHIEVRHHFLRDNVAQGKINLVFVPTEYQLADIFTKPLPEGRFQI 101
+ I +SKNPILHSR KHIE++HHF+RD V +G ++L F+ TE+Q ADIFTKPL RF
Sbjct: 1583 AAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDLQFIDTEHQWADIFTKPLSVERFDF 1642
Query: 100 IRRELGMCMV 71
I++ L M V
Sbjct: 1643 IKKNLNMHFV 1652
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 864 bits (2233), Expect = 0.0
Identities = 443/810 (54%), Positives = 562/810 (69%), Gaps = 25/810 (3%)
Frame = -2
Query: 2434 RSDMGGEFKKDFIP-YCKERGIEHEFSAPRTPQQNGVVERKNRTLEDTARTLLQESKLPR 2258
RSD G EFK I + +E GI+HEFS+P TPQQNGVVERKNRTL D ART+L E K P
Sbjct: 1078 RSDNGTEFKNSQIESFLEEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPD 1137
Query: 2257 KFWAEAVNTACYILNRVLIRPILKKTPYELLKSKTPNISYFKVFGSQCYVLKTLGKDGKF 2078
+FWAEAVNTACY +NR+ + ILKKT YELL K PNISYF+VFGS+C++L G+ KF
Sbjct: 1138 RFWAEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILIKRGRKSKF 1197
Query: 2077 DAKAYEAKFVGYSNTSRAYRVYNMSKRIVEESIHVTFKEAND------DLPSDEEDAGTS 1916
K E +GY + +RAYRV+N S +VE S V F E N DL E+
Sbjct: 1198 APKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDETNGSQVEQVDLDEIGEEQAPC 1257
Query: 1915 SKVTNRPAHMQPNPTEAGNQKDSQSSPAHTLMSTPEKDGSAQTPISPGEVEDLVKSYEKM 1736
+ N P E+ +Q P ++ ++P + + +++ +K
Sbjct: 1258 IALRNMSIG-DVCPKESEEPPSTQDQPPSSMQASPPTQNEDEAQNDEEQNQEVKPPQDKS 1316
Query: 1735 S-----INDIEKSTRTV-------------KNHPPDLVIGDINDKIRTRRGKLNFCAYAA 1610
+ ND EK ++HP D ++GDI+ + TR +FC + +
Sbjct: 1317 NDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYS 1376
Query: 1609 FLSQVEPKNADEALEDSDWIVAMQEELNQFERCDVWELVKPPKDASVIGTKWVFKNKLDE 1430
F+S +EP +EAL+DSDW+VAMQEELN F R +VW LV P +V+GTKWVF+NK DE
Sbjct: 1377 FVSSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRPNQ-NVVGTKWVFRNKQDE 1435
Query: 1429 HGNITRNKARLVAQGYNQQEGIDYDQTYAPVARLEAIRMLLSFACFKGFKLYQMDVKSAF 1250
HG +TRNKARLVA+GY+Q EG+D+D+TYAPVARLE+IR+LL++A + GFKLYQMDVKSAF
Sbjct: 1436 HGVVTRNKARLVAKGYSQVEGLDFDETYAPVARLESIRILLAYATYHGFKLYQMDVKSAF 1495
Query: 1249 LNGYLKEVVYVKQPPGFESAEHLDYVYRLKKALYGLKQAPRAWYERLSKFLLANGFIRGK 1070
LNG +KE VYV+QPPGFE +E+ ++VYRL KALYGLKQAPRAWYE L FL+ANGF GK
Sbjct: 1496 LNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGK 1555
Query: 1069 IDPTLFTKTDKNNDMLVVQLYVDDILFGATNESLCEWFSKCMHSEFDMSMMGELNYFLGL 890
DPTLFTKT ND+ V Q+YVDDI+FG+TNES CE FS+ M +F+MSMMGEL YFLG
Sbjct: 1556 ADPTLFTKT-LENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGF 1614
Query: 889 QIKQTKDGIYVHQSKYVKELLKRFGFDSLKSKSTPMSQSTKLISDENGKDIDITKYRGMI 710
Q+KQ ++G ++ Q+KY +++L +FG K TPM + L D GK +D YR MI
Sbjct: 1615 QVKQLREGTFISQTKYTQDILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMI 1674
Query: 709 GSLLYLTASRPDIMYSVCLCARFQAKPKESHLTAVKRIFKYLSGTVNLGLFYPVTASFDL 530
GSLLYL ASRPDIM SVC+CARFQ+ PKESHLTAVKRI +YL+ T GL+YP ++FDL
Sbjct: 1675 GSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDL 1734
Query: 529 VGYSDADFAGSQVDRKSTSGTCAFLGGSLVSWQSKKQNSVALSTTEGEYLAAGSCCAQIL 350
+GYSDAD+AG +++RKSTSGTC FLG SLVSW SKKQNSVALST E EY+AAG CCAQ+L
Sbjct: 1735 IGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLL 1794
Query: 349 WMLQTLEDFGIKEGTIPIYCDNTSTINISKNPILHSRTKHIEVRHHFLRDNVAQGKINLV 170
WM QTL D+G K +P+ CDN S I ++ NP+ HSRTKHI +R+HFLRD+ +G I +
Sbjct: 1795 WMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEIS 1854
Query: 169 FVPTEYQLADIFTKPLPEGRFQIIRRELGM 80
++ T+ QLADIFTKPL E F +R EL +
Sbjct: 1855 YINTKDQLADIFTKPLDEQSFTRLRHELNI 1884
>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
Length = 1063
Score = 860 bits (2221), Expect = 0.0
Identities = 444/812 (54%), Positives = 562/812 (69%), Gaps = 27/812 (3%)
Frame = -2
Query: 2434 RSDMGGEFKKDFIP-YCKERGIEHEFSAPRTPQQNGVVERKNRTLEDTARTLLQESKLPR 2258
RSD G EFK I + +E GI+HEFS+P TPQQNGVVERKNRTL D ART+L E K P
Sbjct: 249 RSDNGTEFKNSQIESFLEEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPD 308
Query: 2257 KFWAEAVNTACYILNRVLIRPILKKTPYELLKSKTPNISYFKVFGSQCYVLKTLGKDGKF 2078
+FWAEAVNTACY +NR+ + ILKKT YELL K PNISYF+VFGS+C++L G+ KF
Sbjct: 309 RFWAEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILIKRGRKSKF 368
Query: 2077 DAKAYEAKFVGYSNTSRAYRVYNMSKRIVEESIHVTFKEAND------DLPSDEEDAGTS 1916
K E +GY + +RAYRV+N S +VE S V F E N DL E+
Sbjct: 369 APKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDETNGSQVEQVDLDEIGEEQAPC 428
Query: 1915 SKVTN------------RPAHMQPNPTEA-------GNQKDSQSSPAHTLMSTPEKDGSA 1793
+ N P Q P+ + N+ ++Q+ P +D S
Sbjct: 429 IALRNMSIGDMCPKEFEEPPSTQDQPSSSMQASPPTQNEDEAQNDEEQNQEDEPPQDDSN 488
Query: 1792 QTPISPGEVEDLVKSYEKMSINDIEKSTRTV-KNHPPDLVIGDINDKIRTRRGKLNFCAY 1616
G+ D K E+ + + + ++HP D ++GDI+ + TR +FC +
Sbjct: 489 D---QGGDTNDQEKEDEEEPRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEH 545
Query: 1615 AAFLSQVEPKNADEALEDSDWIVAMQEELNQFERCDVWELVKPPKDASVIGTKWVFKNKL 1436
+F+S +EP +EAL+DSDW+VAMQEELN F R +VW LV P +V+GTKWVF+NK
Sbjct: 546 YSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRPNQ-NVVGTKWVFRNKQ 604
Query: 1435 DEHGNITRNKARLVAQGYNQQEGIDYDQTYAPVARLEAIRMLLSFACFKGFKLYQMDVKS 1256
DEHG +TRNKARLVA+GY+Q EG+D+ +TYAPVARLE+IR+LL++A + GFKLYQMDVKS
Sbjct: 605 DEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKS 664
Query: 1255 AFLNGYLKEVVYVKQPPGFESAEHLDYVYRLKKALYGLKQAPRAWYERLSKFLLANGFIR 1076
AFLNG +KE VYV+QPPGFE +E+ ++VYRL KALYGLKQAPRAWYE L FL+ANGF
Sbjct: 665 AFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKV 724
Query: 1075 GKIDPTLFTKTDKNNDMLVVQLYVDDILFGATNESLCEWFSKCMHSEFDMSMMGELNYFL 896
GK DPTLFTKT ND+ V Q+YVDDI+FG+TNES CE FS+ M +F+MSMMGEL YFL
Sbjct: 725 GKADPTLFTKT-LENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFL 783
Query: 895 GLQIKQTKDGIYVHQSKYVKELLKRFGFDSLKSKSTPMSQSTKLISDENGKDIDITKYRG 716
G Q+KQ ++G ++ Q+KY +++L +FG K TPM + L D GK +D YR
Sbjct: 784 GFQVKQLQEGTFISQTKYTQDILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRS 843
Query: 715 MIGSLLYLTASRPDIMYSVCLCARFQAKPKESHLTAVKRIFKYLSGTVNLGLFYPVTASF 536
MIGSLLYL ASRPDIM SVC+CARFQ+ PKESHLTAVKRI +YL+ T GL+YP ++F
Sbjct: 844 MIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTF 903
Query: 535 DLVGYSDADFAGSQVDRKSTSGTCAFLGGSLVSWQSKKQNSVALSTTEGEYLAAGSCCAQ 356
DL+GYSDAD+AG +++RKSTSGTC FLG SLVSW SKKQNSVALST E EY+AAG CCAQ
Sbjct: 904 DLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQ 963
Query: 355 ILWMLQTLEDFGIKEGTIPIYCDNTSTINISKNPILHSRTKHIEVRHHFLRDNVAQGKIN 176
+LWM QTL D+G K +P+ CDN S I ++ NP+ HSRTKHI +R+HFLRD+ +G I
Sbjct: 964 LLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIE 1023
Query: 175 LVFVPTEYQLADIFTKPLPEGRFQIIRRELGM 80
+ ++ T+ QLADIFTKPL E F +R EL +
Sbjct: 1024 ISYINTKDQLADIFTKPLDEQSFTRLRHELNI 1055
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 858 bits (2217), Expect = 0.0
Identities = 440/808 (54%), Positives = 559/808 (69%), Gaps = 23/808 (2%)
Frame = -2
Query: 2434 RSDMGGEFKKDFIP-YCKERGIEHEFSAPRTPQQNGVVERKNRTLEDTARTLLQESKLPR 2258
RSD G EFK I + +E GI+HEFS+P TPQQNGVVERKNRTL D ART+L E K P
Sbjct: 947 RSDNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPD 1006
Query: 2257 KFWAEAVNTACYILNRVLIRPILKKTPYELLKSKTPNISYFKVFGSQCYVLKTLGKDGKF 2078
+FWAEAVNTACY +NR+ + ILKKT YELL K PNISYF+VFGS+C++L G+ KF
Sbjct: 1007 RFWAEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILVKRGRKSKF 1066
Query: 2077 DAKAYEAKFVGYSNTSRAYRVYNMSKRIVEESIHVTFKEAN----DDLPSDEEDAGTSSK 1910
K E +GY +RAYRV+N S +VE S V F E N + + DE +
Sbjct: 1067 APKTVEGFLLGYDPNTRAYRVFNKSTGLVEVSCDVVFDETNGSQVEQVDLDETGNDEAPC 1126
Query: 1909 VTNRPAHM-QPNPTEAGNQKDSQSSPAHTLMSTPEKDGSAQTPISP-------------- 1775
V R + P E+ +Q P+ + ++P + +
Sbjct: 1127 VALRNMSIGDVCPKESEELPSAQDQPSSSTQASPPTQNEDEAQVDEVEDQANEPPQDDGI 1186
Query: 1774 ---GEVEDLVKSYEKMSINDIEKSTRTVKNHPPDLVIGDINDKIRTRRGKLNFCAYAAFL 1604
G+ D K E+ ++HP D ++GDI+ + TR +FC + +F+
Sbjct: 1187 DQGGDANDQDKEDEEQRPPHPRVHQAIQQDHPVDTILGDIHKGVTTRSRVAHFCEHYSFV 1246
Query: 1603 SQVEPKNADEALEDSDWIVAMQEELNQFERCDVWELVKPPKDASVIGTKWVFKNKLDEHG 1424
S +EP +EAL+DSDW+VAMQEELN F R +VW LV P + +V+GTKWVF+NK DEHG
Sbjct: 1247 SSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWHLV-PRPNQNVVGTKWVFRNKQDEHG 1305
Query: 1423 NITRNKARLVAQGYNQQEGIDYDQTYAPVARLEAIRMLLSFACFKGFKLYQMDVKSAFLN 1244
+TRNKARLVA+GY+Q EG+D+ +TYAPVARLE+IR+LL++A + GFKLYQMDVKSAFLN
Sbjct: 1306 VVTRNKARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLN 1365
Query: 1243 GYLKEVVYVKQPPGFESAEHLDYVYRLKKALYGLKQAPRAWYERLSKFLLANGFIRGKID 1064
G +KE VYV+QPPGFE +E+ ++VY+L KALYGLKQAPRAWYE L FL+ANGF GK D
Sbjct: 1366 GPIKEEVYVEQPPGFEDSEYPNHVYKLSKALYGLKQAPRAWYECLRDFLIANGFKVGKAD 1425
Query: 1063 PTLFTKTDKNNDMLVVQLYVDDILFGATNESLCEWFSKCMHSEFDMSMMGELNYFLGLQI 884
PTLFTKT ND+ V Q+YVDDI+FG+TNES CE FS+ M +F+MSMMGEL YFLG Q+
Sbjct: 1426 PTLFTKT-LENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQV 1484
Query: 883 KQTKDGIYVHQSKYVKELLKRFGFDSLKSKSTPMSQSTKLISDENGKDIDITKYRGMIGS 704
KQ ++G ++ Q+KY +++L +FG K TPM + L D GK +D YR MIGS
Sbjct: 1485 KQLQEGTFISQTKYTQDILSKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGS 1544
Query: 703 LLYLTASRPDIMYSVCLCARFQAKPKESHLTAVKRIFKYLSGTVNLGLFYPVTASFDLVG 524
LLYL ASRPDIM SVC+CARFQ+ PKESHLTAVKRI +YL+ T GL+YP ++FDL+G
Sbjct: 1545 LLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLLG 1604
Query: 523 YSDADFAGSQVDRKSTSGTCAFLGGSLVSWQSKKQNSVALSTTEGEYLAAGSCCAQILWM 344
YSDAD+AG +++RKSTSGTC FLG SLVSW SKKQNSVALST E EY+AAG CCAQ+LWM
Sbjct: 1605 YSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWM 1664
Query: 343 LQTLEDFGIKEGTIPIYCDNTSTINISKNPILHSRTKHIEVRHHFLRDNVAQGKINLVFV 164
QTL D+G K +P+ CDN S I ++ NP+ HSRTKHI +R+HFLRD+ +G I + ++
Sbjct: 1665 RQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYI 1724
Query: 163 PTEYQLADIFTKPLPEGRFQIIRRELGM 80
T+ QLADIFTKPL E F +R EL +
Sbjct: 1725 NTKDQLADIFTKPLDEQTFTKLRHELNI 1752