BLASTX nr result
ID: Bupleurum21_contig00011436
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00011436
(692 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22025.3| unnamed protein product [Vitis vinifera] 285 5e-75
ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containi... 285 5e-75
ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containi... 259 5e-67
ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containi... 248 6e-64
sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-c... 229 3e-58
>emb|CBI22025.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 285 bits (730), Expect = 5e-75
Identities = 147/224 (65%), Positives = 167/224 (74%), Gaps = 1/224 (0%)
Frame = +3
Query: 15 FHTFKIHIWSDPNLFTILFQGCIHKHHISLTKQLHSIIITSGCSSDKFICNHLLNVYSKF 194
F F HIWS+P+LF+ L Q CI ++ +SL KQLHS+IITSGCSSDKFI NHLLN+YSK
Sbjct: 41 FDRFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKC 100
Query: 195 GELGTASTLFDVMPRKNIMTHNILIGGYVQIGDLESARKVFDAMPERNVATWNAMVAGLT 374
G+L TA TLF VMPRKNIM+ NILI GY + GD +ARK+FD MPERNVATWNAMVAGL
Sbjct: 101 GQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLI 160
Query: 375 QSEFNEEGLSLFCQMYEIGFFPDDFTLGSVLRGCAGLKNLNMGRQVHGYXXXXXXXXXXX 554
Q EFNEEGL LF +M E+GF PD+F LGSVLRGCAGL+ L GRQVHGY
Sbjct: 161 QFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLV 220
Query: 555 XXXXXAHMYMKSGNFG-GEKLIDGMPVHSVVACNTLIAGRAQQG 683
AHMYMK G+ G GE+LI MP +VVA NTLIAGRAQ G
Sbjct: 221 VVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNG 264
Score = 66.6 bits (161), Expect = 4e-09
Identities = 32/91 (35%), Positives = 49/91 (53%)
Frame = +3
Query: 243 NIMTHNILIGGYVQIGDLESARKVFDAMPERNVATWNAMVAGLTQSEFNEEGLSLFCQMY 422
N++ + L Y++ G L ++ AMP +NV WN ++AG Q+ + EE L + M
Sbjct: 218 NLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMK 277
Query: 423 EIGFFPDDFTLGSVLRGCAGLKNLNMGRQVH 515
GF PD T SV+ C+ L L G+Q+H
Sbjct: 278 MAGFRPDKITFVSVISSCSELATLGQGQQIH 308
>ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
[Vitis vinifera]
Length = 657
Score = 285 bits (730), Expect = 5e-75
Identities = 147/224 (65%), Positives = 167/224 (74%), Gaps = 1/224 (0%)
Frame = +3
Query: 15 FHTFKIHIWSDPNLFTILFQGCIHKHHISLTKQLHSIIITSGCSSDKFICNHLLNVYSKF 194
F F HIWS+P+LF+ L Q CI ++ +SL KQLHS+IITSGCSSDKFI NHLLN+YSK
Sbjct: 41 FDRFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKC 100
Query: 195 GELGTASTLFDVMPRKNIMTHNILIGGYVQIGDLESARKVFDAMPERNVATWNAMVAGLT 374
G+L TA TLF VMPRKNIM+ NILI GY + GD +ARK+FD MPERNVATWNAMVAGL
Sbjct: 101 GQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLI 160
Query: 375 QSEFNEEGLSLFCQMYEIGFFPDDFTLGSVLRGCAGLKNLNMGRQVHGYXXXXXXXXXXX 554
Q EFNEEGL LF +M E+GF PD+F LGSVLRGCAGL+ L GRQVHGY
Sbjct: 161 QFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLV 220
Query: 555 XXXXXAHMYMKSGNFG-GEKLIDGMPVHSVVACNTLIAGRAQQG 683
AHMYMK G+ G GE+LI MP +VVA NTLIAGRAQ G
Sbjct: 221 VVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNG 264
Score = 66.6 bits (161), Expect = 4e-09
Identities = 32/91 (35%), Positives = 49/91 (53%)
Frame = +3
Query: 243 NIMTHNILIGGYVQIGDLESARKVFDAMPERNVATWNAMVAGLTQSEFNEEGLSLFCQMY 422
N++ + L Y++ G L ++ AMP +NV WN ++AG Q+ + EE L + M
Sbjct: 218 NLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMK 277
Query: 423 EIGFFPDDFTLGSVLRGCAGLKNLNMGRQVH 515
GF PD T SV+ C+ L L G+Q+H
Sbjct: 278 MAGFRPDKITFVSVISSCSELATLGQGQQIH 308
>ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
gi|449526872|ref|XP_004170437.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
Length = 667
Score = 259 bits (661), Expect = 5e-67
Identities = 130/224 (58%), Positives = 162/224 (72%), Gaps = 1/224 (0%)
Frame = +3
Query: 15 FHTFKIHIWSDPNLFTILFQGCIHKHHISLTKQLHSIIITSGCSSDKFICNHLLNVYSKF 194
+ TF IWSDP+LF+ L Q CI + KQ+HS+IITSG S DKFI NHLLN YSK
Sbjct: 51 YDTFTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKL 110
Query: 195 GELGTASTLFDVMPRKNIMTHNILIGGYVQIGDLESARKVFDAMPERNVATWNAMVAGLT 374
G+ ++ LF MPR+N+M+ NILI GY+Q+GDLESA+K+FD M ERN+ATWNAM+AGLT
Sbjct: 111 GQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLT 170
Query: 375 QSEFNEEGLSLFCQMYEIGFFPDDFTLGSVLRGCAGLKNLNMGRQVHGYXXXXXXXXXXX 554
Q EFN++ LSLF +MY +GF PD+FTLGSVLRGCAGL++L G++VH
Sbjct: 171 QFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSV 230
Query: 555 XXXXXAHMYMKSGNFG-GEKLIDGMPVHSVVACNTLIAGRAQQG 683
AHMY+KSG+ GEKLI MP+ +VVA NTLIAG+AQ G
Sbjct: 231 VGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNG 274
Score = 65.5 bits (158), Expect = 1e-08
Identities = 35/106 (33%), Positives = 48/106 (45%)
Frame = +3
Query: 276 YVQIGDLESARKVFDAMPERNVATWNAMVAGLTQSEFNEEGLSLFCQMYEIGFFPDDFTL 455
Y++ G L K+ +MP R V WN ++AG Q+ EE L+ + M GF PD T
Sbjct: 239 YIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITF 298
Query: 456 GSVLRGCAGLKNLNMGRQVHGYXXXXXXXXXXXXXXXXAHMYMKSG 593
SVL C+ L L G+Q+H MY +SG
Sbjct: 299 VSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSG 344
>ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Glycine max]
Length = 674
Score = 248 bits (634), Expect = 6e-64
Identities = 127/224 (56%), Positives = 160/224 (71%), Gaps = 1/224 (0%)
Frame = +3
Query: 15 FHTFKIHIWSDPNLFTILFQGCIHKHHISLTKQLHSIIITSGCSSDKFICNHLLNVYSKF 194
F +F IW++P LF+ L Q CI +SL KQLHS+I TSGCSSDKFI NHLLN+YSKF
Sbjct: 58 FESFLSEIWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKF 117
Query: 195 GELGTASTLFDVMPRKNIMTHNILIGGYVQIGDLESARKVFDAMPERNVATWNAMVAGLT 374
GEL A LFD MPR+NIM+ NI+I Y+ +G+LESA+ +FD MP+RNVATWNAMV GLT
Sbjct: 118 GELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLT 177
Query: 375 QSEFNEEGLSLFCQMYEIGFFPDDFTLGSVLRGCAGLKNLNMGRQVHGYXXXXXXXXXXX 554
+ E NEE L LF +M E+ F PD+++LGSVLRGCA L L G+QVH Y
Sbjct: 178 KFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLV 237
Query: 555 XXXXXAHMYMKSGNF-GGEKLIDGMPVHSVVACNTLIAGRAQQG 683
AHMYMK+G+ GE++I+ MP S+VA NTL++G+AQ+G
Sbjct: 238 VGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKG 281
Score = 58.5 bits (140), Expect = 1e-06
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +3
Query: 276 YVQIGDLESARKVFDAMPERNVATWNAMVAGLTQSEFNEEGLSLFCQMYEIGFFPDDFTL 455
Y++ G + +V + MP+ ++ WN +++G Q + E L +C M GF PD T
Sbjct: 246 YMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITF 305
Query: 456 GSVLRGCAGLKNLNMGRQVH 515
SV+ C+ L L G+Q+H
Sbjct: 306 VSVISSCSELAILCQGKQIH 325
>sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
Length = 650
Score = 229 bits (585), Expect = 3e-58
Identities = 112/224 (50%), Positives = 155/224 (69%), Gaps = 1/224 (0%)
Frame = +3
Query: 15 FHTFKIHIWSDPNLFTILFQGCIHKHHISLTKQLHSIIITSGCSSDKFICNHLLNVYSKF 194
F F+++I+++ +LFT Q C + + KQLH +++ SG SSDKFICNHL+++YSK
Sbjct: 33 FQRFRLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKL 92
Query: 195 GELGTASTLFDVMPRKNIMTHNILIGGYVQIGDLESARKVFDAMPERNVATWNAMVAGLT 374
G+ +A ++ M +KN M+ NILI GYV+ GDL +ARKVFD MP+R + TWNAM+AGL
Sbjct: 93 GDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLI 152
Query: 375 QSEFNEEGLSLFCQMYEIGFFPDDFTLGSVLRGCAGLKNLNMGRQVHGYXXXXXXXXXXX 554
Q EFNEEGLSLF +M+ +GF PD++TLGSV G AGL+++++G+Q+HGY
Sbjct: 153 QFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLV 212
Query: 555 XXXXXAHMYMKSGNF-GGEKLIDGMPVHSVVACNTLIAGRAQQG 683
AHMYM++G GE +I MPV ++VA NTLI G AQ G
Sbjct: 213 VNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNG 256