BLASTX nr result

ID: Bupleurum21_contig00011218 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00011218
         (875 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309097.1| predicted protein [Populus trichocarpa] gi|2...   249   4e-64
ref|XP_002521026.1| AP-1 complex subunit gamma-2, putative [Rici...   244   2e-62
ref|XP_002265190.1| PREDICTED: AP-1 complex subunit gamma-2 [Vit...   234   1e-59
ref|XP_002323533.1| predicted protein [Populus trichocarpa] gi|2...   233   3e-59
gb|AEL98819.1| AP-1 complex subunit gamma-1, partial [Silene lat...   232   1e-58

>ref|XP_002309097.1| predicted protein [Populus trichocarpa] gi|222855073|gb|EEE92620.1|
            predicted protein [Populus trichocarpa]
          Length = 877

 Score =  249 bits (637), Expect = 4e-64
 Identities = 127/211 (60%), Positives = 155/211 (73%)
 Frame = +2

Query: 5    SQTGTNQAQKSGTDALMDLLSIGTAPTQXXXXXXXXXXXXXXXXTLIGALENLSIHSTNP 184
            +Q+GTNQ QK+GTD L+DLLSIG  P Q                + I  L+ LS  S+  
Sbjct: 667  TQSGTNQVQKAGTDVLLDLLSIGVPPVQSSSSTTDILSPIQNEKSPIATLDALSSSSSPS 726

Query: 185  VQASSASGSFPVMDLLDGLPPSDKKEEDNGLTYPSVVAYESSSLRVSFKFSKQPGNVQTT 364
             QA+S++ + P+MDLLDG  PS  K E+NG  YP  VA+ESSSLR++F FSKQPGN QTT
Sbjct: 727  AQATSSARAAPMMDLLDGFGPSPSKPENNGSVYPPFVAFESSSLRITFNFSKQPGNPQTT 786

Query: 365  FVEANFENKSSDVYTDFIFQAAVPKFLQLQLDPASNNVLPVSGNGSITQNLRVINSQHGK 544
             V+A F N + +V+TDFIFQAAVPKFLQL LDPAS+N+LP SGNGSITQN+RV N+QHGK
Sbjct: 787  LVQATFTNLTPNVFTDFIFQAAVPKFLQLHLDPASSNILPASGNGSITQNMRVTNNQHGK 846

Query: 545  KSLVMRIRIAYKLNDKDKLEEGQISNFPSGL 637
            KSLVMR RI+YK+N+KD LEEG I+NFP  L
Sbjct: 847  KSLVMRTRISYKINNKDTLEEGHINNFPREL 877


>ref|XP_002521026.1| AP-1 complex subunit gamma-2, putative [Ricinus communis]
            gi|223539863|gb|EEF41443.1| AP-1 complex subunit gamma-2,
            putative [Ricinus communis]
          Length = 875

 Score =  244 bits (623), Expect = 2e-62
 Identities = 127/212 (59%), Positives = 152/212 (71%)
 Frame = +2

Query: 2    SSQTGTNQAQKSGTDALMDLLSIGTAPTQXXXXXXXXXXXXXXXXTLIGALENLSIHSTN 181
            S+Q G+NQA K+GT+ L+DLLSIGT P Q                T I  L+ LS    +
Sbjct: 665  STQPGSNQAPKAGTNILLDLLSIGTPPVQSSSSTSDLLLSGQDNQTPITTLDALSSPFPS 724

Query: 182  PVQASSASGSFPVMDLLDGLPPSDKKEEDNGLTYPSVVAYESSSLRVSFKFSKQPGNVQT 361
              Q  S+ G+ P+MDLLDG  PS  K E+NG  YPS+VA+ESS+LR++F FSK PGN QT
Sbjct: 725  -AQVKSSVGASPMMDLLDGFGPSPSKHEENGTVYPSIVAFESSNLRMTFNFSKSPGNPQT 783

Query: 362  TFVEANFENKSSDVYTDFIFQAAVPKFLQLQLDPASNNVLPVSGNGSITQNLRVINSQHG 541
            T ++A F N S + +TDF+FQAAVPKFLQL LDPAS+N LP SGNGS+TQNLRV NSQHG
Sbjct: 784  TIIQATFANLSPNAFTDFVFQAAVPKFLQLHLDPASSNTLPASGNGSLTQNLRVTNSQHG 843

Query: 542  KKSLVMRIRIAYKLNDKDKLEEGQISNFPSGL 637
            KK LVMRIRIAYK+N KD LEEGQI+NFP  L
Sbjct: 844  KKPLVMRIRIAYKMNGKDMLEEGQINNFPRDL 875


>ref|XP_002265190.1| PREDICTED: AP-1 complex subunit gamma-2 [Vitis vinifera]
            gi|296086533|emb|CBI32122.3| unnamed protein product
            [Vitis vinifera]
          Length = 878

 Score =  234 bits (598), Expect = 1e-59
 Identities = 127/213 (59%), Positives = 149/213 (69%), Gaps = 1/213 (0%)
 Frame = +2

Query: 2    SSQTGTNQAQKSGTDALMDLLSIGTAP-TQXXXXXXXXXXXXXXXXTLIGALENLSIHST 178
            SS +G  Q  K+GTD L+DLLSIGT P  Q                     LE LS  S+
Sbjct: 666  SSLSGMTQVPKAGTDVLLDLLSIGTPPPAQSSLSTPDILSSSQDNKMPAPTLERLSSPSS 725

Query: 179  NPVQASSASGSFPVMDLLDGLPPSDKKEEDNGLTYPSVVAYESSSLRVSFKFSKQPGNVQ 358
              +QASS +G+ P+MDLLDG  P+    EDNG  YPS+VA+ESS+LR++F FSK P N Q
Sbjct: 726  ISIQASSPAGAAPMMDLLDGFAPNLPLPEDNGPVYPSIVAFESSALRLTFNFSKTPANPQ 785

Query: 359  TTFVEANFENKSSDVYTDFIFQAAVPKFLQLQLDPASNNVLPVSGNGSITQNLRVINSQH 538
            TT V+A+F N S +++TDFIFQAAVPKFLQL LD AS N LP SGNGSITQNLRV NS H
Sbjct: 786  TTLVQASFTNLSPNIFTDFIFQAAVPKFLQLHLDSASGNTLPASGNGSITQNLRVTNSLH 845

Query: 539  GKKSLVMRIRIAYKLNDKDKLEEGQISNFPSGL 637
            GKK LVMRIRIAYK+N+KD LEEGQI+NFP  L
Sbjct: 846  GKKPLVMRIRIAYKMNNKDVLEEGQINNFPRDL 878


>ref|XP_002323533.1| predicted protein [Populus trichocarpa] gi|222868163|gb|EEF05294.1|
            predicted protein [Populus trichocarpa]
          Length = 875

 Score =  233 bits (595), Expect = 3e-59
 Identities = 122/209 (58%), Positives = 151/209 (72%)
 Frame = +2

Query: 11   TGTNQAQKSGTDALMDLLSIGTAPTQXXXXXXXXXXXXXXXXTLIGALENLSIHSTNPVQ 190
            T +   QK+GTD L+DLLSIGT P Q                + I  L+ LS  S+   Q
Sbjct: 666  TQSGHIQKAGTDVLLDLLSIGT-PVQSSSPTTDILSSSQNDKSPIATLDALSSPSSLSAQ 724

Query: 191  ASSASGSFPVMDLLDGLPPSDKKEEDNGLTYPSVVAYESSSLRVSFKFSKQPGNVQTTFV 370
            A+S++ + P+MDLLDG  PS  K EDNG  YP +VA++SSSLR++F FSKQPGN QTT +
Sbjct: 725  ATSSARAAPMMDLLDGFGPSPPKPEDNGSVYPPLVAFQSSSLRITFNFSKQPGNPQTTLI 784

Query: 371  EANFENKSSDVYTDFIFQAAVPKFLQLQLDPASNNVLPVSGNGSITQNLRVINSQHGKKS 550
            +A F N + +V+TDFIFQAAVPKFLQL LDPAS+N+LP SGNG+ITQNLRV NSQHGKKS
Sbjct: 785  QATFTNLTPNVFTDFIFQAAVPKFLQLHLDPASSNILPASGNGAITQNLRVTNSQHGKKS 844

Query: 551  LVMRIRIAYKLNDKDKLEEGQISNFPSGL 637
            LVMR R++YK ++K  LEEGQI+NFP  L
Sbjct: 845  LVMRTRMSYKFDNKVTLEEGQINNFPQDL 873


>gb|AEL98819.1| AP-1 complex subunit gamma-1, partial [Silene latifolia]
          Length = 878

 Score =  232 bits (591), Expect = 1e-58
 Identities = 123/209 (58%), Positives = 146/209 (69%)
 Frame = +2

Query: 11   TGTNQAQKSGTDALMDLLSIGTAPTQXXXXXXXXXXXXXXXXTLIGALENLSIHSTNPVQ 190
            +G++Q QKSGTDAL+DLLSIG++P                       LE LS  S+ P Q
Sbjct: 670  SGSSQNQKSGTDALLDLLSIGSSPAANTSAIPDILSLSLETKHSGATLEGLSSVSSIPKQ 729

Query: 191  ASSASGSFPVMDLLDGLPPSDKKEEDNGLTYPSVVAYESSSLRVSFKFSKQPGNVQTTFV 370
             SS SG  P+MDLLDGL  S    E NGL +PS+VA+ESSSL+++F F+K   N QTT +
Sbjct: 730  VSSLSGPAPMMDLLDGLSSSQPTLESNGLQFPSIVAFESSSLKMTFDFAKDSANPQTTSI 789

Query: 371  EANFENKSSDVYTDFIFQAAVPKFLQLQLDPASNNVLPVSGNGSITQNLRVINSQHGKKS 550
            +A F N S ++YTDF+FQAAVPKFLQL LDPASN  LP +GNGSITQ+LRV NSQHGKK 
Sbjct: 790  KATFVNLSVNIYTDFVFQAAVPKFLQLHLDPASNTTLPAAGNGSITQSLRVTNSQHGKKP 849

Query: 551  LVMRIRIAYKLNDKDKLEEGQISNFPSGL 637
            LVMR RI YK+N KD LEEGQISNFP  L
Sbjct: 850  LVMRFRIGYKVNGKDVLEEGQISNFPRNL 878


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