BLASTX nr result
ID: Bupleurum21_contig00011209
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00011209
(1808 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methy... 775 0.0
ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|2... 764 0.0
ref|XP_002522772.1| ribosomal RNA small subunit methyltransferas... 758 0.0
ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B... 721 0.0
ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferas... 719 0.0
>ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis
vinifera] gi|296089930|emb|CBI39749.3| unnamed protein
product [Vitis vinifera]
Length = 525
Score = 775 bits (2000), Expect = 0.0
Identities = 385/505 (76%), Positives = 441/505 (87%)
Frame = -1
Query: 1694 SFKPLRSSKKPPQPNYGVATRGPLKSRPKIQELNLEVSPHRAVSAVRLMRIEFGGAFADL 1515
S KPL+ +K P + G ++ + +NLE+SPHRAVSAVRLMRIE GGAFADL
Sbjct: 20 SSKPLKVAKTRPNTAIPTRSTGTRRNANRTYGVNLEISPHRAVSAVRLMRIELGGAFADL 79
Query: 1514 LNEQGKGSGNDEMGYVARTLGFRTRSLDDKDLRLVTDIVGGTIRWRRYLDFLILSLCHDV 1335
LNE+GKGSG++EMGYV RTLGFRTR LDD+DLRLVTDIVGG+IRWRRYLD LI+SLCHD
Sbjct: 80 LNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIVGGSIRWRRYLDHLIVSLCHDS 139
Query: 1334 KTFNSMEPLLLQILRIGFYEILKLEMPPYAVVDENVGLAKFALRPGAGNMVNGILRKLVL 1155
KTF SMEPLLLQILRIGFYEI+ L+MPPYAVVDENV LAK ALRPGAGNMVN ILRKLVL
Sbjct: 140 KTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLAKVALRPGAGNMVNAILRKLVL 199
Query: 1154 LKESNSLPSPILDGNDRMQARSLATLHSHPVWMVRRWTKHLGQDKAIALMTWNNKHPSYS 975
LKE NSLP P L+G+DR QAR+LATL+SHPVWMVRRWTK+LGQ++AI LM WNN PS+S
Sbjct: 200 LKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMMWNNSEPSFS 259
Query: 974 LRANSGKGFTRADLEFRLKMLKVPYELSPNLNDFVRIKTGLQTIIRAGLLKEGLCSVQDE 795
LRANSGKGFTRADL RLKMLKVP+ELSP+L++FVRI+TG+Q +I+A LLKEGLCSVQDE
Sbjct: 260 LRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIRTGMQIVIQAQLLKEGLCSVQDE 319
Query: 794 SAGLVVSVLDPRPGETIVDCCAAPGGKTLFIASLMNGQGMLSAIDINEGRLRILAETAKL 615
SAGLVVSV+DP+PGE+I+DCCAAPGGKT+F+AS ++GQGM+ AIDIN+GRLRI+ ETAKL
Sbjct: 320 SAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQGMVHAIDINKGRLRIVKETAKL 379
Query: 614 QKFDSVITTIHADLCVFAEVSHVKFDKVLLDAPCSGLGVLCKRPDLRWNRKLEDMEELKL 435
D VITT+HADLC FA+ + VK DKVLLDAPCSGLGVL KR DLRWNR LEDME+LK
Sbjct: 380 LLVDDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLGVLSKRADLRWNRSLEDMEQLKN 439
Query: 434 LQDRLLDAASILVKPGGLLVYSTCSIDPEENEERVASFLQRHPEFCSDSAEKYVPPEFVT 255
LQD LLDAA+ILVKPGG+LVYSTCSIDPEENEERVA+FLQRHPEF D +YVP +FVT
Sbjct: 440 LQDELLDAAAILVKPGGVLVYSTCSIDPEENEERVAAFLQRHPEFSIDPVGRYVPSDFVT 499
Query: 254 EKGFYFSSPVKHSMDGAFAARLLRS 180
E GFYFS+PVKH++DGAFAARL+RS
Sbjct: 500 EGGFYFSNPVKHALDGAFAARLVRS 524
>ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|222847639|gb|EEE85186.1|
predicted protein [Populus trichocarpa]
Length = 527
Score = 764 bits (1973), Expect = 0.0
Identities = 388/525 (73%), Positives = 446/525 (84%), Gaps = 2/525 (0%)
Frame = -1
Query: 1748 AHVLSLHTFNSSEFTVTCSFKPLRSSKKPPQP--NYGVATRGPLKSRPKIQELNLEVSPH 1575
A VLSLH F S+E KPL+ KP AT+ P K Q+LNL+VSPH
Sbjct: 2 AQVLSLHVFFSAEIHKVGPSKPLKRIHKPKTSLSTRRKATQSPQSPLRKTQKLNLQVSPH 61
Query: 1574 RAVSAVRLMRIEFGGAFADLLNEQGKGSGNDEMGYVARTLGFRTRSLDDKDLRLVTDIVG 1395
RAVSAVRLMRIE GGAFADLLN++GKGSG++EMGYV RTLGFRT+ LDD+DLRLVTDIVG
Sbjct: 62 RAVSAVRLMRIEMGGAFADLLNDKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 121
Query: 1394 GTIRWRRYLDFLILSLCHDVKTFNSMEPLLLQILRIGFYEILKLEMPPYAVVDENVGLAK 1215
GTIRWRRYLD+LI SLCHD K F SMEPLLLQILRIGFYEI+KL+MP YAVVDENV LAK
Sbjct: 122 GTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIVKLDMPSYAVVDENVRLAK 181
Query: 1214 FALRPGAGNMVNGILRKLVLLKESNSLPSPILDGNDRMQARSLATLHSHPVWMVRRWTKH 1035
+LRPGAGNMVNGILRKLVLLKESNSLP P L+G+DR QAR+LATL+SHPVWMVRRWTK
Sbjct: 182 VSLRPGAGNMVNGILRKLVLLKESNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKL 241
Query: 1034 LGQDKAIALMTWNNKHPSYSLRANSGKGFTRADLEFRLKMLKVPYELSPNLNDFVRIKTG 855
LGQ+KAI LM WNN +PS+SLRANSGKG TRADL + MLKVP+ELS +L+ FVR+KTG
Sbjct: 242 LGQEKAIKLMMWNNDNPSFSLRANSGKGVTRADLVMQFNMLKVPHELSLHLDHFVRVKTG 301
Query: 854 LQTIIRAGLLKEGLCSVQDESAGLVVSVLDPRPGETIVDCCAAPGGKTLFIASLMNGQGM 675
LQ +I+AGLLK+GLC+VQDESAGL+VSV++P+PG++I+DCCAAPGGKTL++AS M+GQGM
Sbjct: 302 LQIVIQAGLLKQGLCAVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKTLYMASQMHGQGM 361
Query: 674 LSAIDINEGRLRILAETAKLQKFDSVITTIHADLCVFAEVSHVKFDKVLLDAPCSGLGVL 495
L AIDIN+GRLRI+ ETAKL + D VITTI +DL FAE +K DKVLLDAPCSGLGVL
Sbjct: 362 LYAIDINKGRLRIVKETAKLHQVDGVITTIPSDLRTFAESYQLKSDKVLLDAPCSGLGVL 421
Query: 494 CKRPDLRWNRKLEDMEELKLLQDRLLDAASILVKPGGLLVYSTCSIDPEENEERVASFLQ 315
KR DLRWNR+LED+EELK LQ+ LLDAASILVKPGG+LVYSTCSIDPEENEERV +FL
Sbjct: 422 SKRADLRWNRRLEDLEELKKLQEELLDAASILVKPGGVLVYSTCSIDPEENEERVDAFLL 481
Query: 314 RHPEFCSDSAEKYVPPEFVTEKGFYFSSPVKHSMDGAFAARLLRS 180
RHPEF D ++YVPP+FVT++GFY S PVKHSMDGAFAARL+R+
Sbjct: 482 RHPEFRIDPVDRYVPPDFVTKRGFYSSDPVKHSMDGAFAARLIRT 526
>ref|XP_002522772.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
communis] gi|223538010|gb|EEF39623.1| ribosomal RNA small
subunit methyltransferase B, putative [Ricinus communis]
Length = 527
Score = 758 bits (1956), Expect = 0.0
Identities = 380/525 (72%), Positives = 444/525 (84%), Gaps = 2/525 (0%)
Frame = -1
Query: 1748 AHVLSLHTFNSSEFTVTCSFKPLRSSKKPPQPNYGVAT--RGPLKSRPKIQELNLEVSPH 1575
AHVLSLH + S++ + T PL+ SK+ +P ++ +GP+ K Q+LNLEVSPH
Sbjct: 2 AHVLSLHVYLSADTSKTARCMPLKFSKRANKPKKSLSAPRKGPVSPLKKTQKLNLEVSPH 61
Query: 1574 RAVSAVRLMRIEFGGAFADLLNEQGKGSGNDEMGYVARTLGFRTRSLDDKDLRLVTDIVG 1395
RAVSAVRLMRIE GGAFADLLNE+GKGSG +EMGYV RTLGFRT++LDD+DLRLVTD+VG
Sbjct: 62 RAVSAVRLMRIEMGGAFADLLNEKGKGSGENEMGYVERTLGFRTKNLDDRDLRLVTDVVG 121
Query: 1394 GTIRWRRYLDFLILSLCHDVKTFNSMEPLLLQILRIGFYEILKLEMPPYAVVDENVGLAK 1215
GTIRWRR+LD LI SL HD TF SMEPLLLQILRIG YEI+KL+MPPYAVVDENV LAK
Sbjct: 122 GTIRWRRFLDHLICSLFHDENTFRSMEPLLLQILRIGAYEIVKLDMPPYAVVDENVRLAK 181
Query: 1214 FALRPGAGNMVNGILRKLVLLKESNSLPSPILDGNDRMQARSLATLHSHPVWMVRRWTKH 1035
ALRPGAGNMVNGILRKLVLLKE+NSLP P L+G+ R QAR+LATLHSHPVWMVRRWTK+
Sbjct: 182 VALRPGAGNMVNGILRKLVLLKENNSLPLPKLEGDARAQARALATLHSHPVWMVRRWTKY 241
Query: 1034 LGQDKAIALMTWNNKHPSYSLRANSGKGFTRADLEFRLKMLKVPYELSPNLNDFVRIKTG 855
LGQ++AI LM WNN PS+SLRAN GKG TR DL RL +LKVPYELSP + FVR++TG
Sbjct: 242 LGQEEAIRLMIWNNSDPSFSLRANGGKGVTRDDLVTRLNLLKVPYELSPYSDHFVRMRTG 301
Query: 854 LQTIIRAGLLKEGLCSVQDESAGLVVSVLDPRPGETIVDCCAAPGGKTLFIASLMNGQGM 675
LQ +++AGLLKEG CSVQDESAGLVVS+++P+PG++I+DCCAAPGGKT+++ASLM GQGM
Sbjct: 302 LQIVLQAGLLKEGFCSVQDESAGLVVSIVNPQPGDSIIDCCAAPGGKTVYMASLMEGQGM 361
Query: 674 LSAIDINEGRLRILAETAKLQKFDSVITTIHADLCVFAEVSHVKFDKVLLDAPCSGLGVL 495
+ AIDIN+GRLRIL ETAKL + D VIT + +DL V AE +K DKVLLDAPCSGLGVL
Sbjct: 362 VYAIDINKGRLRILQETAKLHQIDGVITAVPSDLRVLAENYPMKSDKVLLDAPCSGLGVL 421
Query: 494 CKRPDLRWNRKLEDMEELKLLQDRLLDAASILVKPGGLLVYSTCSIDPEENEERVASFLQ 315
KR DLRWNR++ED+EELK LQD LLDAAS LVKPGG LVYSTCSIDPEENEERV +FL
Sbjct: 422 SKRADLRWNRRVEDLEELKNLQDELLDAASTLVKPGGFLVYSTCSIDPEENEERVDAFLL 481
Query: 314 RHPEFCSDSAEKYVPPEFVTEKGFYFSSPVKHSMDGAFAARLLRS 180
RHPEF D ++YVPP+ VTE+GFY SSPVKHS+DGAFAARL+++
Sbjct: 482 RHPEFQIDPVDRYVPPDLVTERGFYSSSPVKHSIDGAFAARLVKA 526
>ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B [Arabidopsis
thaliana] gi|18176252|gb|AAL60011.1| putative sun protein
fmu [Arabidopsis thaliana] gi|21436219|gb|AAM51397.1|
putative sun protein fmu [Arabidopsis thaliana]
gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein
[Arabidopsis thaliana] gi|332641785|gb|AEE75306.1|
ribosomal RNA small subunit methyltransferase B
[Arabidopsis thaliana]
Length = 523
Score = 721 bits (1860), Expect = 0.0
Identities = 365/525 (69%), Positives = 429/525 (81%), Gaps = 2/525 (0%)
Frame = -1
Query: 1748 AHVLSLHTFNSSEFTVTC--SFKPLRSSKKPPQPNYGVATRGPLKSRPKIQELNLEVSPH 1575
A +LS + S+E SFK + ++KP P+ RGP+ K Q LNLEVSPH
Sbjct: 2 AQLLSFRVYLSAETQKASPGSFKRTQKTRKPFSPD----RRGPVAPSRKSQNLNLEVSPH 57
Query: 1574 RAVSAVRLMRIEFGGAFADLLNEQGKGSGNDEMGYVARTLGFRTRSLDDKDLRLVTDIVG 1395
RAVSAVRLMRIE+GGAFADLLNE+GKGSG++EM YV RT+GFRTR LDD+DLRLVTD+VG
Sbjct: 58 RAVSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVVG 117
Query: 1394 GTIRWRRYLDFLILSLCHDVKTFNSMEPLLLQILRIGFYEILKLEMPPYAVVDENVGLAK 1215
GTIRWRRYLD LI SLCH+ +TF +MEPLLLQILRIG YEI+K +MPPYAVVDENV LAK
Sbjct: 118 GTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAK 177
Query: 1214 FALRPGAGNMVNGILRKLVLLKESNSLPSPILDGNDRMQARSLATLHSHPVWMVRRWTKH 1035
ALRPGAG+ VNGILRKLV LKE ++LP P ++G+DR QAR+LATLHSHPVWMVRRW K+
Sbjct: 178 VALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKY 237
Query: 1034 LGQDKAIALMTWNNKHPSYSLRANSGKGFTRADLEFRLKMLKVPYELSPNLNDFVRIKTG 855
LG D+A LM WNN P +SLRAN+G+ TRADL RL LKVP+ELS +L +FVRIKTG
Sbjct: 238 LGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIKTG 297
Query: 854 LQTIIRAGLLKEGLCSVQDESAGLVVSVLDPRPGETIVDCCAAPGGKTLFIASLMNGQGM 675
LQT+++AGLLKEG+CSVQDESAGL+VSV+ P+PGE I+D CAAPGGKTLF+AS + GQGM
Sbjct: 298 LQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGM 357
Query: 674 LSAIDINEGRLRILAETAKLQKFDSVITTIHADLCVFAEVSHVKFDKVLLDAPCSGLGVL 495
+ A+D+NEGRLRIL ETAK + D +ITTIH+DL VFAE + V++DKVLLDAPCSGLGVL
Sbjct: 358 IYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVL 417
Query: 494 CKRPDLRWNRKLEDMEELKLLQDRLLDAASILVKPGGLLVYSTCSIDPEENEERVASFLQ 315
KR DLRWNRKLEDM EL LQD LLD+AS LVK GG+LVYSTCSIDPEENE RV +FL
Sbjct: 418 SKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLL 477
Query: 314 RHPEFCSDSAEKYVPPEFVTEKGFYFSSPVKHSMDGAFAARLLRS 180
RHPEF D +VP FVT +GF+ S+PVKHS+DGAFAARL+R+
Sbjct: 478 RHPEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARLVRA 522
>ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula]
gi|355519174|gb|AET00798.1| Ribosomal RNA small subunit
methyltransferase [Medicago truncatula]
Length = 654
Score = 719 bits (1856), Expect = 0.0
Identities = 360/509 (70%), Positives = 425/509 (83%), Gaps = 3/509 (0%)
Frame = -1
Query: 1706 TVTCSFKPLRSSKKPPQPNYGVAT---RGPLKSRPKIQELNLEVSPHRAVSAVRLMRIEF 1536
T S KP + S + N + + G K Q+LN ++SPHRAVSAVRLMRIE
Sbjct: 18 TTITSSKPFKLSHRTHSTNISILSSTNNGSANRSVKPQKLNSDISPHRAVSAVRLMRIEL 77
Query: 1535 GGAFADLLNEQGKGSGNDEMGYVARTLGFRTRSLDDKDLRLVTDIVGGTIRWRRYLDFLI 1356
GGAFADLLNE+GKGSG +EMGYV RTLGFRTR L+++DLRLVT+IVGGTIRWRRYLD LI
Sbjct: 78 GGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNNQDLRLVTEIVGGTIRWRRYLDHLI 137
Query: 1355 LSLCHDVKTFNSMEPLLLQILRIGFYEILKLEMPPYAVVDENVGLAKFALRPGAGNMVNG 1176
SLCHD K +SMEPLLLQILRIGFYEI+KL+MPPYAVVDENV LAK ALRPGAGNMVNG
Sbjct: 138 SSLCHD-KDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVQLAKAALRPGAGNMVNG 196
Query: 1175 ILRKLVLLKESNSLPSPILDGNDRMQARSLATLHSHPVWMVRRWTKHLGQDKAIALMTWN 996
+LRKLV+LKE+ +LP P ++G+DR QAR+LATL+SHPVW+VRRWTK+LGQ++AI LM WN
Sbjct: 197 VLRKLVVLKENETLPLPKVEGDDRSQARALATLYSHPVWIVRRWTKYLGQEEAIKLMIWN 256
Query: 995 NKHPSYSLRANSGKGFTRADLEFRLKMLKVPYELSPNLNDFVRIKTGLQTIIRAGLLKEG 816
N PSYSLRAN KGF+R DL L LKVP++LS +L+DFVRIKTGLQ II AGL KEG
Sbjct: 257 NIEPSYSLRANRAKGFSRDDLVTELNALKVPHKLSLHLDDFVRIKTGLQIIIHAGLFKEG 316
Query: 815 LCSVQDESAGLVVSVLDPRPGETIVDCCAAPGGKTLFIASLMNGQGMLSAIDINEGRLRI 636
LCSVQDESAGL+VS++DP+PGETIVDCCAAPGGKTL++A+ ++GQGM+ A+D+N GRLRI
Sbjct: 317 LCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMAAHLSGQGMVYAVDVNSGRLRI 376
Query: 635 LAETAKLQKFDSVITTIHADLCVFAEVSHVKFDKVLLDAPCSGLGVLCKRPDLRWNRKLE 456
L ETAKL + D V+TT+HADL + +K +KVLLDAPCSGLGVL KR DLRWNRKLE
Sbjct: 377 LKETAKLHQVDGVVTTVHADLRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLE 436
Query: 455 DMEELKLLQDRLLDAASILVKPGGLLVYSTCSIDPEENEERVASFLQRHPEFCSDSAEKY 276
DME+LK LQD LLDAAS LVKPGG+LVYSTCSIDPEEN++RVA+FL+RH +F D ++Y
Sbjct: 437 DMEQLKKLQDELLDAASTLVKPGGVLVYSTCSIDPEENDDRVAAFLERHADFHIDPVDRY 496
Query: 275 VPPEFVTEKGFYFSSPVKHSMDGAFAARL 189
VPP+FVT KGFY S+PVKHS+DG+FAARL
Sbjct: 497 VPPDFVTPKGFYSSNPVKHSLDGSFAARL 525