BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00010890
         (545 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-contai...   145   5e-33
ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabi...   143   2e-32
emb|CBI26363.3| unnamed protein product [Vitis vinifera]              143   2e-32
ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II su...   143   2e-32
emb|CAB10245.1| RNA polymerase II fifth largest subunit like pro...   143   2e-32

>ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein
           [Arabidopsis lyrata subsp. lyrata]
           gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7
           N-terminal domain-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 178

 Score =  145 bits (365), Expect = 5e-33
 Identities = 60/100 (60%), Positives = 87/100 (87%)
 Frame = +2

Query: 2   FSCLTFKVFTGEVLVGEVHRILKHGIFLRCGPVENIYISHNKMQGYSFVPGENPIFMSEK 181
           FS +TFK+F GE++ G VH++LKHG+F+RCGP+EN+Y+S+ KM  Y +VPGENPIFM+EK
Sbjct: 76  FSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYVPGENPIFMNEK 135

Query: 182 SAKIEKGVKLRVMVIGVRYMEAEKEFQAVAHLDGDYLGPI 301
           +++I+    +RV+VIG+++MEAE+EFQA+A L+GDYLGP+
Sbjct: 136 TSRIQVETTVRVVVIGIKWMEAEREFQALASLEGDYLGPL 175


>ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
           gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis
           thaliana] gi|332658072|gb|AEE83472.1| DNA-directed RNA
           polymerase II subunit G [Arabidopsis thaliana]
          Length = 178

 Score =  143 bits (360), Expect = 2e-32
 Identities = 58/100 (58%), Positives = 86/100 (86%)
 Frame = +2

Query: 2   FSCLTFKVFTGEVLVGEVHRILKHGIFLRCGPVENIYISHNKMQGYSFVPGENPIFMSEK 181
           FS +TFK+F GE++ G VH++LKHG+F+RCGP+EN+Y+S+ KM  Y ++PGENPIFM+EK
Sbjct: 76  FSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEK 135

Query: 182 SAKIEKGVKLRVMVIGVRYMEAEKEFQAVAHLDGDYLGPI 301
           +++I+    +RV+VIG+++ME E+EFQA+A L+GDYLGP+
Sbjct: 136 TSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPL 175


>emb|CBI26363.3| unnamed protein product [Vitis vinifera]
          Length = 242

 Score =  143 bits (360), Expect = 2e-32
 Identities = 62/100 (62%), Positives = 84/100 (84%)
 Frame = +2

Query: 2   FSCLTFKVFTGEVLVGEVHRILKHGIFLRCGPVENIYISHNKMQGYSFVPGENPIFMSEK 181
           FSC+TFK+F GE+L G VH++LKHG+ LRCGPVENIY+S  KM  Y +VPGENP+F++EK
Sbjct: 141 FSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPDYRYVPGENPVFLNEK 200

Query: 182 SAKIEKGVKLRVMVIGVRYMEAEKEFQAVAHLDGDYLGPI 301
            +KIEK V +R +V+G +++EAE+EFQA+  L+GDYLGP+
Sbjct: 201 LSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPL 240


>ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
           vinifera] gi|147822056|emb|CAN61549.1| hypothetical
           protein VITISV_043525 [Vitis vinifera]
          Length = 177

 Score =  143 bits (360), Expect = 2e-32
 Identities = 62/100 (62%), Positives = 84/100 (84%)
 Frame = +2

Query: 2   FSCLTFKVFTGEVLVGEVHRILKHGIFLRCGPVENIYISHNKMQGYSFVPGENPIFMSEK 181
           FSC+TFK+F GE+L G VH++LKHG+ LRCGPVENIY+S  KM  Y +VPGENP+F++EK
Sbjct: 76  FSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPDYRYVPGENPVFLNEK 135

Query: 182 SAKIEKGVKLRVMVIGVRYMEAEKEFQAVAHLDGDYLGPI 301
            +KIEK V +R +V+G +++EAE+EFQA+  L+GDYLGP+
Sbjct: 136 LSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPL 175


>emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
           thaliana] gi|7268172|emb|CAB78508.1| RNA polymerase II
           fifth largest subunit like protein [Arabidopsis
           thaliana]
          Length = 161

 Score =  143 bits (360), Expect = 2e-32
 Identities = 58/100 (58%), Positives = 86/100 (86%)
 Frame = +2

Query: 2   FSCLTFKVFTGEVLVGEVHRILKHGIFLRCGPVENIYISHNKMQGYSFVPGENPIFMSEK 181
           FS +TFK+F GE++ G VH++LKHG+F+RCGP+EN+Y+S+ KM  Y ++PGENPIFM+EK
Sbjct: 59  FSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEK 118

Query: 182 SAKIEKGVKLRVMVIGVRYMEAEKEFQAVAHLDGDYLGPI 301
           +++I+    +RV+VIG+++ME E+EFQA+A L+GDYLGP+
Sbjct: 119 TSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPL 158