BLASTX nr result
ID: Bupleurum21_contig00010888
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00010888
(1447 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA72741.1| RAD23, isoform I [Daucus carota] 361 2e-97
ref|XP_002529115.1| uv excision repair protein rad23, putative [... 336 1e-89
ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23... 334 3e-89
ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23... 333 9e-89
ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycin... 328 2e-87
>emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 361 bits (927), Expect = 2e-97
Identities = 192/252 (76%), Positives = 203/252 (80%), Gaps = 2/252 (0%)
Frame = -1
Query: 793 PAPLAAVGSEANVYDSAASNLIMGSNVEEAIQQILDMGGGTWDRATVLRALRAAYNNPER 614
P P AAVGSEANVYDSAAS L+ GSN+E AIQQILDMGGGTWDR TV+R +RAA+NNPER
Sbjct: 132 PIPSAAVGSEANVYDSAASLLVAGSNLEGAIQQILDMGGGTWDRDTVIRIVRAAFNNPER 191
Query: 613 AVEYLYSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGPNANPLDLFPQGL 434
AVEYLYSGI GPNANPLDLFPQGL
Sbjct: 192 AVEYLYSGIPEQAEAPPVAPSPPSGQAANPLDQPPAAAQPAPAS-AGPNANPLDLFPQGL 250
Query: 433 PDMG-NAAGAGNLDFLRTSPQFQALRAMVQSNPQILQPMLQELGKQNPQLVRLIQEHQAD 257
PDMG NAAGAGNLDFLRT+ QFQALRAMVQSNPQILQPMLQELGKQNP L+RLIQEHQAD
Sbjct: 251 PDMGSNAAGAGNLDFLRTNQQFQALRAMVQSNPQILQPMLQELGKQNPHLMRLIQEHQAD 310
Query: 256 FLQLINEPVEGGENILGQ-PQAIAVTPEERDAIERLEAMGFDRELVLEVFFACNKDEELA 80
FLQLINEP+EGGEN+LG PQAI+VTPEERDAIERLEAMGFDRELVLEVFFACNK+EELA
Sbjct: 311 FLQLINEPMEGGENLLGHGPQAISVTPEERDAIERLEAMGFDRELVLEVFFACNKNEELA 370
Query: 79 ANYLLDHMHEFE 44
ANYLLDHMHEFE
Sbjct: 371 ANYLLDHMHEFE 382
Score = 89.4 bits (220), Expect = 2e-15
Identities = 43/50 (86%), Positives = 47/50 (94%)
Frame = -2
Query: 1302 MKIFVKTLKGSQFEIQVNPEDSVDDLKRSIETVQGSGVYPAAQQMLIYQG 1153
MKI+VKTLKGSQFEIQVNP+DSV D+KRSIET QG+ VYPAAQQMLIYQG
Sbjct: 1 MKIYVKTLKGSQFEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQG 50
>ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein
rad23, putative [Ricinus communis]
Length = 409
Score = 336 bits (861), Expect = 1e-89
Identities = 181/261 (69%), Positives = 195/261 (74%), Gaps = 11/261 (4%)
Frame = -1
Query: 793 PAPLAAVGSEANVYDSAASNLIMGSNVEEAIQQILDMGGGTWDRATVLRALRAAYNNPER 614
PAP A + +VY AASNL+ G+N+E AIQQILDMGGGTWDR TV+RALRAAYNNPER
Sbjct: 148 PAPSAIAAQQGDVYGQAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPER 207
Query: 613 AVEYLYSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGPNANPLDLFPQGL 434
AVEYLYSGI S GPNANPLDLFPQGL
Sbjct: 208 AVEYLYSGIPEQAEVPPVAPVSLSGQAANQPAQPQQPAQPAAVPSGGPNANPLDLFPQGL 267
Query: 433 PDMGNA-----AGAGNLDFLRTSPQFQALRAMVQSNPQILQPMLQELGKQNPQLVRLIQE 269
P+MG+ AGAG LDFLR S QFQALRAMVQ+NPQILQPMLQELGKQNP LVRLIQE
Sbjct: 268 PNMGSGGAGAGAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPNLVRLIQE 327
Query: 268 HQADFLQLINEPVEGGE-NILGQ-----PQAIAVTPEERDAIERLEAMGFDRELVLEVFF 107
HQ DFL+LINEPVEGGE NI+GQ PQA+ VTPEER+AIERLEAMGFDR LVLEVFF
Sbjct: 328 HQTDFLRLINEPVEGGEGNIMGQLAAAMPQAVTVTPEEREAIERLEAMGFDRGLVLEVFF 387
Query: 106 ACNKDEELAANYLLDHMHEFE 44
ACNK+EELAANYLLDHMHEFE
Sbjct: 388 ACNKNEELAANYLLDHMHEFE 408
Score = 78.6 bits (192), Expect = 4e-12
Identities = 35/50 (70%), Positives = 44/50 (88%)
Frame = -2
Query: 1302 MKIFVKTLKGSQFEIQVNPEDSVDDLKRSIETVQGSGVYPAAQQMLIYQG 1153
MKIFVKTLKG+ F+++V PED++ D+K+SIET QG+ VYPA QQMLIYQG
Sbjct: 1 MKIFVKTLKGTTFDVEVKPEDTIADVKKSIETTQGADVYPAGQQMLIYQG 50
>ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product
[Vitis vinifera]
Length = 397
Score = 334 bits (857), Expect = 3e-89
Identities = 181/257 (70%), Positives = 195/257 (75%), Gaps = 7/257 (2%)
Frame = -1
Query: 793 PAPLAAVGSEANVYDSAASNLIMGSNVEEAIQQILDMGGGTWDRATVLRALRAAYNNPER 614
PA V SE + Y AASNL+ G+N EEAIQQILDMGGGTWDR TV+RALRAAYNNPER
Sbjct: 143 PASTVTVVSETDAYGQAASNLVAGNNFEEAIQQILDMGGGTWDRDTVVRALRAAYNNPER 202
Query: 613 AVEYLYSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGPNANPLDLFPQGL 434
AVEYLYSGI +GPNANPLDLFPQG+
Sbjct: 203 AVEYLYSGIPEQAEVPPVARAPASGQAANPPAQSQQPVPAPS---SGPNANPLDLFPQGI 259
Query: 433 PDMG-NAAGAGNLDFLRTSPQFQALRAMVQSNPQILQPMLQELGKQNPQLVRLIQEHQAD 257
P++G N AGAG LDFLR S QFQALRAMVQ+NPQILQPMLQELGKQNPQL+RLIQEHQAD
Sbjct: 260 PNVGSNPAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQAD 319
Query: 256 FLQLINEPVEGGE-NILGQ-----PQAIAVTPEERDAIERLEAMGFDRELVLEVFFACNK 95
FL+LINEPVEGGE NILGQ PQA+ VTPEER+AI RLEAMGFDR LVLEVFFACNK
Sbjct: 320 FLRLINEPVEGGEGNILGQLAAAMPQAVTVTPEEREAIARLEAMGFDRALVLEVFFACNK 379
Query: 94 DEELAANYLLDHMHEFE 44
+EELAANYLLDHMHEFE
Sbjct: 380 NEELAANYLLDHMHEFE 396
Score = 79.0 bits (193), Expect = 3e-12
Identities = 38/50 (76%), Positives = 44/50 (88%)
Frame = -2
Query: 1302 MKIFVKTLKGSQFEIQVNPEDSVDDLKRSIETVQGSGVYPAAQQMLIYQG 1153
MKIFVKTLKG+ FEIQV PED+V D+K +IE VQGS VYPA+QQMLI+QG
Sbjct: 1 MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQG 50
>ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera] gi|296087286|emb|CBI33660.3| unnamed protein
product [Vitis vinifera]
Length = 381
Score = 333 bits (853), Expect = 9e-89
Identities = 172/254 (67%), Positives = 194/254 (76%), Gaps = 4/254 (1%)
Frame = -1
Query: 793 PAPLAAVGSEANVYDSAASNLIMGSNVEEAIQQILDMGGGTWDRATVLRALRAAYNNPER 614
PA ++ S++++Y AASNL+ G+N+E IQQILDMGGG+WDR TV+RALRAAYNNPER
Sbjct: 128 PAVAPSISSDSDIYGQAASNLVAGNNLEVTIQQILDMGGGSWDRDTVVRALRAAYNNPER 187
Query: 613 AVEYLYSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGPNANPLDLFPQGL 434
AVEYLYSGI +GPNANPLDLFPQGL
Sbjct: 188 AVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQAPQGPQTTVAS-SGPNANPLDLFPQGL 246
Query: 433 PDMGNAAGAGNLDFLRTSPQFQALRAMVQSNPQILQPMLQELGKQNPQLVRLIQEHQADF 254
P MG+ A AG LDFLR SPQFQALRAMVQ+NPQILQPMLQELGKQNP L+RLIQEHQADF
Sbjct: 247 PSMGSNASAGTLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADF 306
Query: 253 LQLINEPVEGGENILGQ----PQAIAVTPEERDAIERLEAMGFDRELVLEVFFACNKDEE 86
L+LINEPVEG N+LGQ PQA+ +TPEER++IERLEAMGFDR LVLEVFFACNK+EE
Sbjct: 307 LRLINEPVEGEGNVLGQLGTVPQAVTITPEERESIERLEAMGFDRALVLEVFFACNKNEE 366
Query: 85 LAANYLLDHMHEFE 44
LAANYLLDHMHEFE
Sbjct: 367 LAANYLLDHMHEFE 380
Score = 76.6 bits (187), Expect = 1e-11
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = -2
Query: 1302 MKIFVKTLKGSQFEIQVNPEDSVDDLKRSIETVQGSGVYPAAQQMLIYQG 1153
MKIFVKTLKG+ FEI+V PED+V D+K++IE V G+ VYPAAQQMLI+QG
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQG 50
>ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 328 bits (842), Expect = 2e-87
Identities = 176/259 (67%), Positives = 199/259 (76%), Gaps = 9/259 (3%)
Frame = -1
Query: 793 PAPLAAVGS--EANVYDSAASNLIMGSNVEEAIQQILDMGGGTWDRATVLRALRAAYNNP 620
PAP+++ + E+++Y AASNL+ GSN+E IQQILDMGGG+WDR TV+RALRAAYNNP
Sbjct: 133 PAPISSGSAVPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNP 192
Query: 619 ERAVEYLYSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGPNANPLDLFPQ 440
ERAVEYLYSGI S+GPNANPLDLFPQ
Sbjct: 193 ERAVEYLYSGIPEQAEAPPVTREPASAQPANPPAAAPQAAQPASVPSSGPNANPLDLFPQ 252
Query: 439 GLPDMGN-AAGAGNLDFLRTSPQFQALRAMVQSNPQILQPMLQELGKQNPQLVRLIQEHQ 263
GLP++G+ AAGAG+LDFLR S QFQALRAMVQ+NPQILQPMLQELGKQNP L+RLIQEHQ
Sbjct: 253 GLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 312
Query: 262 ADFLQLINEPVEGGE-NILGQ-----PQAIAVTPEERDAIERLEAMGFDRELVLEVFFAC 101
DFL+LINEPVEGGE NILGQ PQA+ VTPEER AIERLEAMGFDR VLEV+FAC
Sbjct: 313 VDFLRLINEPVEGGEGNILGQLASAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFAC 372
Query: 100 NKDEELAANYLLDHMHEFE 44
NK+EELAANYLLDHMHEF+
Sbjct: 373 NKNEELAANYLLDHMHEFD 391
Score = 79.0 bits (193), Expect = 3e-12
Identities = 35/50 (70%), Positives = 46/50 (92%)
Frame = -2
Query: 1302 MKIFVKTLKGSQFEIQVNPEDSVDDLKRSIETVQGSGVYPAAQQMLIYQG 1153
MK+FVKTLKG+ FEI+VNP D++ ++K++IETVQG+ VYPAAQQMLI+QG
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQG 50