BLASTX nr result

ID: Bupleurum21_contig00010801 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00010801
         (823 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310429.1| predicted protein [Populus trichocarpa] gi|2...   270   2e-70
ref|XP_002534138.1| Protein YIF1A, putative [Ricinus communis] g...   265   1e-68
ref|NP_564367.1| integral membrane HRF1-like protein [Arabidopsi...   260   3e-67
gb|AFK38884.1| unknown [Lotus japonicus]                              259   7e-67
ref|XP_004152088.1| PREDICTED: protein YIF1B-A-like [Cucumis sat...   258   1e-66

>ref|XP_002310429.1| predicted protein [Populus trichocarpa] gi|222853332|gb|EEE90879.1|
           predicted protein [Populus trichocarpa]
          Length = 269

 Score =  270 bits (691), Expect = 2e-70
 Identities = 129/163 (79%), Positives = 136/163 (83%)
 Frame = +1

Query: 334 MYDNIGNQPGGPSLSTNAQKIPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISR 513
           MY+N+G QPG P   TN Q  PFGNAF                EKILGSSSEYVQSNISR
Sbjct: 1   MYNNVGPQPGVPRPPTNPQPTPFGNAFYGAGSGLIKGGLGAYGEKILGSSSEYVQSNISR 60

Query: 514 YFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI 693
           YFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI
Sbjct: 61  YFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI 120

Query: 694 PFMAFGTYVVLAGCLLGLQGKFTPEALNWLFIKGLVGWFLQVS 822
           PFMAFGTYVVLAG  LGL GKF+PEALNWLF+KGL+GWF+QV+
Sbjct: 121 PFMAFGTYVVLAGLSLGLNGKFSPEALNWLFVKGLLGWFMQVA 163


>ref|XP_002534138.1| Protein YIF1A, putative [Ricinus communis]
           gi|223525796|gb|EEF28242.1| Protein YIF1A, putative
           [Ricinus communis]
          Length = 269

 Score =  265 bits (676), Expect = 1e-68
 Identities = 126/163 (77%), Positives = 134/163 (82%)
 Frame = +1

Query: 334 MYDNIGNQPGGPSLSTNAQKIPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISR 513
           MY+N+G QPG P   TN Q  PFGNAF                EKILGSSSEYVQSNISR
Sbjct: 1   MYNNVGTQPGVPRPPTNPQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISR 60

Query: 514 YFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI 693
           YFSDPQYYFQVND YVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI
Sbjct: 61  YFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI 120

Query: 694 PFMAFGTYVVLAGCLLGLQGKFTPEALNWLFIKGLVGWFLQVS 822
           PFMAFGTY+VLAG  LGL GKF+PE LNWLF+KGL+GWF+QV+
Sbjct: 121 PFMAFGTYIVLAGLSLGLNGKFSPENLNWLFVKGLLGWFMQVA 163


>ref|NP_564367.1| integral membrane HRF1-like protein [Arabidopsis thaliana]
           gi|145324088|ref|NP_001077633.1| integral membrane
           HRF1-like protein [Arabidopsis thaliana]
           gi|14532658|gb|AAK64057.1| unknown protein [Arabidopsis
           thaliana] gi|21280943|gb|AAM44952.1| unknown protein
           [Arabidopsis thaliana] gi|21554340|gb|AAM63447.1|
           unknown [Arabidopsis thaliana]
           gi|332193168|gb|AEE31289.1| integral membrane HRF1-like
           protein [Arabidopsis thaliana]
           gi|332193169|gb|AEE31290.1| integral membrane HRF1-like
           protein [Arabidopsis thaliana]
          Length = 269

 Score =  260 bits (664), Expect = 3e-67
 Identities = 126/162 (77%), Positives = 132/162 (81%)
 Frame = +1

Query: 334 MYDNIGNQPGGPSLSTNAQKIPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISR 513
           MY+N+G QPG P    N +  PFGN F                E+ILGSSSEYVQSNISR
Sbjct: 1   MYNNMGPQPGMPRPPGNPEPGPFGNPFTGAGSGFIRGGLGAYGERILGSSSEYVQSNISR 60

Query: 514 YFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI 693
           YFSDPQYYFQVND YVRNKLKVVLFPFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDLYI
Sbjct: 61  YFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDLYI 120

Query: 694 PFMAFGTYVVLAGCLLGLQGKFTPEALNWLFIKGLVGWFLQV 819
           PFMAFGTYVVLAG  LGL GKFTPEALNWLF+KGLVGWFLQV
Sbjct: 121 PFMAFGTYVVLAGLSLGLNGKFTPEALNWLFVKGLVGWFLQV 162


>gb|AFK38884.1| unknown [Lotus japonicus]
          Length = 269

 Score =  259 bits (661), Expect = 7e-67
 Identities = 125/163 (76%), Positives = 134/163 (82%)
 Frame = +1

Query: 334 MYDNIGNQPGGPSLSTNAQKIPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISR 513
           MY+N+G+QPG P   T++Q  PFGNAF                 KILGSSSEYVQSNISR
Sbjct: 1   MYNNVGSQPGVPQPPTSSQANPFGNAFQVAGSGLIRGGLGAYGGKILGSSSEYVQSNISR 60

Query: 514 YFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI 693
           YFSDPQYYFQVNDHYV+NKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI
Sbjct: 61  YFSDPQYYFQVNDHYVKNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI 120

Query: 694 PFMAFGTYVVLAGCLLGLQGKFTPEALNWLFIKGLVGWFLQVS 822
           P MAFGTYVVLAG  LGL GKF+PEALN LFIKGL+GWF+Q S
Sbjct: 121 PLMAFGTYVVLAGLSLGLHGKFSPEALNLLFIKGLLGWFMQAS 163


>ref|XP_004152088.1| PREDICTED: protein YIF1B-A-like [Cucumis sativus]
           gi|449502274|ref|XP_004161595.1| PREDICTED: protein
           YIF1B-A-like [Cucumis sativus]
          Length = 269

 Score =  258 bits (658), Expect = 1e-66
 Identities = 123/162 (75%), Positives = 132/162 (81%)
 Frame = +1

Query: 334 MYDNIGNQPGGPSLSTNAQKIPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISR 513
           MY+N+  QP  P    ++Q  PFGNAF                EKI GSSSEYVQSNISR
Sbjct: 1   MYNNVEAQPAAPKPPASSQPNPFGNAFYGAGSGLIRGGLGAYGEKIFGSSSEYVQSNISR 60

Query: 514 YFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYI 693
           YFSDPQYYFQVND YVRNKLKVVLFPFLHRGHWTRIT+P+GGRLSYKPPIYDINAPDLYI
Sbjct: 61  YFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITDPIGGRLSYKPPIYDINAPDLYI 120

Query: 694 PFMAFGTYVVLAGCLLGLQGKFTPEALNWLFIKGLVGWFLQV 819
           PFMAFGTYVVLAG  LGLQGKFTPEAL+WLFIKGL+GWF+QV
Sbjct: 121 PFMAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQV 162


Top