BLASTX nr result

ID: Bupleurum21_contig00010728 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00010728
         (427 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002302625.1| predicted protein [Populus trichocarpa] gi|2...    95   5e-18
ref|XP_002320860.1| predicted protein [Populus trichocarpa] gi|2...    94   9e-18
ref|XP_002277120.2| PREDICTED: DEAD-box ATP-dependent RNA helica...    91   1e-16
emb|CBI40505.3| unnamed protein product [Vitis vinifera]               91   1e-16
emb|CAN67649.1| hypothetical protein VITISV_005080 [Vitis vinifera]    91   1e-16

>ref|XP_002302625.1| predicted protein [Populus trichocarpa] gi|222844351|gb|EEE81898.1|
           predicted protein [Populus trichocarpa]
          Length = 758

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 59/118 (50%), Positives = 73/118 (61%), Gaps = 12/118 (10%)
 Frame = +1

Query: 46  MPVKIIQSLRLLNPTLPITRFSIMKANSTPKPSRAIPIFSRVFPHKLKYQSLSKRLGFSS 225
           MP+K +  LR LNP+LP+TRF +M    +    R IPIFSRVFP KLKY      LGF+S
Sbjct: 1   MPIKFLPPLRFLNPSLPVTRFPLMNVGLSLNTPRPIPIFSRVFPFKLKY------LGFAS 54

Query: 226 LITLKESQFGNVRN---FS----SGV-----RASKSLIEDEAELSDWVSDLRSDSFLG 363
             + +  +   +R+   FS     GV     R SKSLIEDEAELSDWVSDLR++S  G
Sbjct: 55  QFSTRSFRPEPIRSRPEFSRLTGGGVERGESRPSKSLIEDEAELSDWVSDLRTNSIRG 112


>ref|XP_002320860.1| predicted protein [Populus trichocarpa] gi|222861633|gb|EEE99175.1|
           predicted protein [Populus trichocarpa]
          Length = 292

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 54/112 (48%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
 Frame = +1

Query: 46  MPVKIIQSLRLLNPTLPITRFSIMKANSTPKPSRAIPIFSRVFPHKLKYQSLSKRLGFSS 225
           M +K +  LRLLNP+ P+TRF +M    +    R+IPIFSRVFP KLKY   S R    S
Sbjct: 1   MSIKFLPPLRLLNPSPPVTRFPLMNVGLSINTRRSIPIFSRVFPFKLKYPGFSSRFSTRS 60

Query: 226 L---ITLKESQF---GNVRNFSSGVRASKSLIEDEAELSDWVSDLRSDSFLG 363
                T    +F             R SKSL+EDEAELSDWVSDLR++SF G
Sbjct: 61  FRPGTTGSRPEFTRRTGAERERGEARTSKSLVEDEAELSDWVSDLRTNSFRG 112


>ref|XP_002277120.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Vitis
           vinifera]
          Length = 751

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 53/109 (48%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
 Frame = +1

Query: 46  MPVKIIQSLRLLNPTLPITRFSIMKANSTPKPSRAIPIFSRVFPHKLKYQSL----SKRL 213
           MPVKI+   R LNP LP++RF  M      + SR +PIF RVFP KLKY  L    S   
Sbjct: 1   MPVKILPPFRFLNPCLPVSRFQSMNLKPANQYSRTLPIFGRVFPFKLKYLGLAPPPSHHF 60

Query: 214 GFSSLIT-LKESQFGNVRNFSSGVRASKSLIEDEAELSDWVSDLRSDSF 357
           G   L T     +  +   F   V+ SKSL+EDEAELSDWVS L+ DSF
Sbjct: 61  GPRRLSTRSSRPRPSSTSGFRGEVKVSKSLMEDEAELSDWVSGLKDDSF 109


>emb|CBI40505.3| unnamed protein product [Vitis vinifera]
          Length = 732

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 53/109 (48%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
 Frame = +1

Query: 46  MPVKIIQSLRLLNPTLPITRFSIMKANSTPKPSRAIPIFSRVFPHKLKYQSL----SKRL 213
           MPVKI+   R LNP LP++RF  M      + SR +PIF RVFP KLKY  L    S   
Sbjct: 1   MPVKILPPFRFLNPCLPVSRFQSMNLKPANQYSRTLPIFGRVFPFKLKYLGLAPPPSHHF 60

Query: 214 GFSSLIT-LKESQFGNVRNFSSGVRASKSLIEDEAELSDWVSDLRSDSF 357
           G   L T     +  +   F   V+ SKSL+EDEAELSDWVS L+ DSF
Sbjct: 61  GPRRLSTRSSRPRPSSTSGFRGEVKVSKSLMEDEAELSDWVSGLKDDSF 109


>emb|CAN67649.1| hypothetical protein VITISV_005080 [Vitis vinifera]
          Length = 863

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 53/109 (48%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
 Frame = +1

Query: 46  MPVKIIQSLRLLNPTLPITRFSIMKANSTPKPSRAIPIFSRVFPHKLKYQSL----SKRL 213
           MPVKI+   R LNP LP++RF  M      + SR +PIF RVFP KLKY  L    S   
Sbjct: 1   MPVKILPPFRFLNPCLPVSRFQSMNLKPANQYSRTLPIFGRVFPFKLKYLGLAPPPSHHF 60

Query: 214 GFSSLIT-LKESQFGNVRNFSSGVRASKSLIEDEAELSDWVSDLRSDSF 357
           G   L T     +  +   F   V+ SKSL+EDEAELSDWVS L+ DSF
Sbjct: 61  GPRRLSTRSSRPRPSSTSGFRGEVKVSKSLMEDEAELSDWVSGLKDDSF 109


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