BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00010717
         (1482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17913.3| unnamed protein product [Vitis vinifera]              724   0.0  
ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]     724   0.0  
ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|2...   706   0.0  
dbj|BAF03051.1| DNA ligase IV [Populus nigra]                         698   0.0  
ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max]        670   0.0  

>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
          Length = 1163

 Score =  724 bits (1868), Expect = 0.0
 Identities = 361/492 (73%), Positives = 401/492 (81%), Gaps = 1/492 (0%)
 Frame = -1

Query: 1482 DDVERFFKAIIDNRDEGIVLKDLASKWEPSDRSVKWLKLKPEYIRAGSDLDVLVIXXXXX 1303
            DDVERFFK  ++NRDEGIVLKDL SKWEPSDRS KWLKLKPEY+ AGSDLDVL+I     
Sbjct: 403  DDVERFFKKTVENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYVHAGSDLDVLIIGGYYG 462

Query: 1302 XXXXXGEVAQFLVGLAERPTTTTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRRYEYP 1123
                 GEVAQFLVGLA+     TYPRRFISFCRVGTGLSD+ELDAVVTKLKPYFR+ EYP
Sbjct: 463  SGRRGGEVAQFLVGLADHSGPDTYPRRFISFCRVGTGLSDDELDAVVTKLKPYFRKNEYP 522

Query: 1122 KKAAPSFYQVTNNSKERPDVWIDSPEKSIILSINSDIRTIRSEVFAAPYSLRFPRIDRVR 943
            KKA PSFYQVTNNSKERPD+WIDSPEKSIILSI SDIRTIRSEVFAAPYSLRFPRID VR
Sbjct: 523  KKAPPSFYQVTNNSKERPDIWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDCVR 582

Query: 942  YDKPWHECLDVQSFIELVQSSNGTTQREGDHGVLLDDKPKQRKVSGKGEKKNVTVVPSHI 763
            YDKPWHECLDVQSF+ELV SSNGTTQR  D+G + D KPK+ K S KGE+K   VVPSH 
Sbjct: 583  YDKPWHECLDVQSFMELVHSSNGTTQRGADYGRMQDSKPKRMKSSKKGEQKTAHVVPSHF 642

Query: 762  IQTDVSDIKGETLIFSKMMFYFVNLPPNHSLDSLHRLVAENGGTSSMNLNNSVTHCIAAE 583
            +QTDV+++KGETLIFS MMFYFVN PP HSLDSLH+LV ENGGT SMNLNNSVTHC+AA+
Sbjct: 643  MQTDVTNVKGETLIFSNMMFYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVAAQ 702

Query: 582  SKGIKYQAAKLRGDVIHYSWLFDCCSQKKLLPLKPKYFIHCSEQSKKLLEEEIDNFSDSY 403
            SKGIKYQAAKLRGD+IH SW+FDCCSQKKLLPL+PKYF+  SE SKK L+EEID FSDSY
Sbjct: 703  SKGIKYQAAKLRGDIIHCSWVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKFSDSY 762

Query: 402  YLDLDIVDLKQLLNNVDGLEDSKSVDXXXXXYCPKDKWSYFSGCCIYFHPSTQ-SNXXXX 226
            Y DLDI D+KQLL+NVD  ++SK++D     YCPK+KWS F  CCI FH S Q SN    
Sbjct: 763  YQDLDISDIKQLLSNVDRSDNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQSSNSDWE 822

Query: 225  XXXXXAQKRMKFEVSMGGGKVSGSLSQATHLVIQSLQFVDVGVDAALNSFSAAEVHLLCK 46
                 A +RMK EVSMGGGKV  +LSQATHLV+ S+   D+     + SFS AE HLLC 
Sbjct: 823  LLSKLALRRMKLEVSMGGGKVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCN 882

Query: 45   KRMHVVGSQWLE 10
            K++HVVG QWLE
Sbjct: 883  KKLHVVGYQWLE 894


>ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]
          Length = 1162

 Score =  724 bits (1868), Expect = 0.0
 Identities = 361/492 (73%), Positives = 401/492 (81%), Gaps = 1/492 (0%)
 Frame = -1

Query: 1482 DDVERFFKAIIDNRDEGIVLKDLASKWEPSDRSVKWLKLKPEYIRAGSDLDVLVIXXXXX 1303
            DDVERFFK  ++NRDEGIVLKDL SKWEPSDRS KWLKLKPEY+ AGSDLDVL+I     
Sbjct: 402  DDVERFFKKTVENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYVHAGSDLDVLIIGGYYG 461

Query: 1302 XXXXXGEVAQFLVGLAERPTTTTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRRYEYP 1123
                 GEVAQFLVGLA+     TYPRRFISFCRVGTGLSD+ELDAVVTKLKPYFR+ EYP
Sbjct: 462  SGRRGGEVAQFLVGLADHSGPDTYPRRFISFCRVGTGLSDDELDAVVTKLKPYFRKNEYP 521

Query: 1122 KKAAPSFYQVTNNSKERPDVWIDSPEKSIILSINSDIRTIRSEVFAAPYSLRFPRIDRVR 943
            KKA PSFYQVTNNSKERPD+WIDSPEKSIILSI SDIRTIRSEVFAAPYSLRFPRID VR
Sbjct: 522  KKAPPSFYQVTNNSKERPDIWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDCVR 581

Query: 942  YDKPWHECLDVQSFIELVQSSNGTTQREGDHGVLLDDKPKQRKVSGKGEKKNVTVVPSHI 763
            YDKPWHECLDVQSF+ELV SSNGTTQR  D+G + D KPK+ K S KGE+K   VVPSH 
Sbjct: 582  YDKPWHECLDVQSFMELVHSSNGTTQRGADYGRMQDSKPKRMKSSKKGEQKTAHVVPSHF 641

Query: 762  IQTDVSDIKGETLIFSKMMFYFVNLPPNHSLDSLHRLVAENGGTSSMNLNNSVTHCIAAE 583
            +QTDV+++KGETLIFS MMFYFVN PP HSLDSLH+LV ENGGT SMNLNNSVTHC+AA+
Sbjct: 642  MQTDVTNVKGETLIFSNMMFYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVAAQ 701

Query: 582  SKGIKYQAAKLRGDVIHYSWLFDCCSQKKLLPLKPKYFIHCSEQSKKLLEEEIDNFSDSY 403
            SKGIKYQAAKLRGD+IH SW+FDCCSQKKLLPL+PKYF+  SE SKK L+EEID FSDSY
Sbjct: 702  SKGIKYQAAKLRGDIIHCSWVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKFSDSY 761

Query: 402  YLDLDIVDLKQLLNNVDGLEDSKSVDXXXXXYCPKDKWSYFSGCCIYFHPSTQ-SNXXXX 226
            Y DLDI D+KQLL+NVD  ++SK++D     YCPK+KWS F  CCI FH S Q SN    
Sbjct: 762  YQDLDISDIKQLLSNVDRSDNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQSSNSDWE 821

Query: 225  XXXXXAQKRMKFEVSMGGGKVSGSLSQATHLVIQSLQFVDVGVDAALNSFSAAEVHLLCK 46
                 A +RMK EVSMGGGKV  +LSQATHLV+ S+   D+     + SFS AE HLLC 
Sbjct: 822  LLSKLALRRMKLEVSMGGGKVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCN 881

Query: 45   KRMHVVGSQWLE 10
            K++HVVG QWLE
Sbjct: 882  KKLHVVGYQWLE 893


>ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|222866696|gb|EEF03827.1|
            predicted protein [Populus trichocarpa]
          Length = 1242

 Score =  706 bits (1822), Expect = 0.0
 Identities = 345/495 (69%), Positives = 404/495 (81%), Gaps = 1/495 (0%)
 Frame = -1

Query: 1482 DDVERFFKAIIDNRDEGIVLKDLASKWEPSDRSVKWLKLKPEYIRAGSDLDVLVIXXXXX 1303
            DD+E+FFK  I+NRDEGIVLKDL SKWEPSDRS KWLKLKPEYIRAGSDLDVL+I     
Sbjct: 411  DDIEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYG 470

Query: 1302 XXXXXGEVAQFLVGLAERPTTTTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRRYEYP 1123
                 GEVAQFL+GLAERP + TYPRRFISFCRVG GLSDEELD VV+KLKPYFR+ EYP
Sbjct: 471  SGRRGGEVAQFLLGLAERPASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKNEYP 530

Query: 1122 KKAAPSFYQVTNNSKERPDVWIDSPEKSIILSINSDIRTIRSEVFAAPYSLRFPRIDRVR 943
            K + PSFYQVTNNSKERPDVWI++P+KSIILSI SDIRTI SEVF+APYSLRFPRIDRVR
Sbjct: 531  KNSPPSFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVR 590

Query: 942  YDKPWHECLDVQSFIELVQSSNGTTQREGDHGVLLDDKPKQRKVSGKGEKKNVTVVPSHI 763
            YDKPWHECLDVQSF+ELV SSNGTTQ+   +G + D KP   K S KGEKK+V+VVPSH+
Sbjct: 591  YDKPWHECLDVQSFVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHL 650

Query: 762  IQTDVSDIKGETLIFSKMMFYFVNLPPNHSLDSLHRLVAENGGTSSMNLNNSVTHCIAAE 583
            IQTD+SDIKGETLIFS MMFYFVN+PP++SL+SLH++VAENGGT SMNLNNSVTHCIAAE
Sbjct: 651  IQTDISDIKGETLIFSNMMFYFVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIAAE 710

Query: 582  SKGIKYQAAKLRGDVIHYSWLFDCCSQKKLLPLKPKYFIHCSEQSKKLLEEEIDNFSDSY 403
            SKGIKYQAAKL GD+IHYSW+ DCC QKKLLPL+PK F+  S+ SKK L EEID FSDSY
Sbjct: 711  SKGIKYQAAKLHGDIIHYSWVLDCCLQKKLLPLQPKSFLFLSDGSKKKLHEEIDEFSDSY 770

Query: 402  YLDLDIVDLKQLLNNVDGLEDSKSVDXXXXXYCPKDKWSYFSGCCIYFHPSTQS-NXXXX 226
            Y DLD+ D+KQLL+N++  ED+K++D     YCP++KWS F GCC+YFH S +S      
Sbjct: 771  YWDLDLSDIKQLLSNINASEDAKAIDDLKQKYCPEEKWSLFHGCCVYFHISRESLTPDWE 830

Query: 225  XXXXXAQKRMKFEVSMGGGKVSGSLSQATHLVIQSLQFVDVGVDAALNSFSAAEVHLLCK 46
                 A +R+K E+ MGGGKVS +++ ATHLV+  +   DV   + + SF+ AE H L  
Sbjct: 831  SLLGLAFRRLKLEIFMGGGKVSNNIAHATHLVVLIVPASDVDFGSLVKSFTTAEKHFLLN 890

Query: 45   KRMHVVGSQWLEDSI 1
            KR++V+GSQWLEDS+
Sbjct: 891  KRLYVIGSQWLEDSL 905


>dbj|BAF03051.1| DNA ligase IV [Populus nigra]
          Length = 1319

 Score =  698 bits (1802), Expect = 0.0
 Identities = 342/495 (69%), Positives = 402/495 (81%), Gaps = 1/495 (0%)
 Frame = -1

Query: 1482 DDVERFFKAIIDNRDEGIVLKDLASKWEPSDRSVKWLKLKPEYIRAGSDLDVLVIXXXXX 1303
            DD+E+FFK  I+NRDEGIVLKDL SKWEPSDRS KWLKLKPEYIRAGSDLDVL+I     
Sbjct: 411  DDIEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYG 470

Query: 1302 XXXXXGEVAQFLVGLAERPTTTTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRRYEYP 1123
                 GEVAQFL+GLAE P + TYPRRFISFCRVG GLS+EELD VV+KLKPYFR+ EYP
Sbjct: 471  SGRRGGEVAQFLLGLAECPASNTYPRRFISFCRVGNGLSNEELDTVVSKLKPYFRKNEYP 530

Query: 1122 KKAAPSFYQVTNNSKERPDVWIDSPEKSIILSINSDIRTIRSEVFAAPYSLRFPRIDRVR 943
            K + PSFYQVTNNSKERPDVWI++P+KSIILSI SDIRTI SEVF+APYSLRFPRIDRVR
Sbjct: 531  KNSPPSFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVR 590

Query: 942  YDKPWHECLDVQSFIELVQSSNGTTQREGDHGVLLDDKPKQRKVSGKGEKKNVTVVPSHI 763
            YDKPWHECLDVQSF+ELV SSNGTTQ+   +G + D KP   K S KGEKK+V+VVPSH+
Sbjct: 591  YDKPWHECLDVQSFVELVHSSNGTTQKGKGYGDVQDSKPTHIKSSRKGEKKSVSVVPSHL 650

Query: 762  IQTDVSDIKGETLIFSKMMFYFVNLPPNHSLDSLHRLVAENGGTSSMNLNNSVTHCIAAE 583
            IQTD+SDIKGETLIFS MMFY VN+PP++SL+SLH++VAENGGT SMNLNNSVTHCIAAE
Sbjct: 651  IQTDISDIKGETLIFSNMMFYVVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIAAE 710

Query: 582  SKGIKYQAAKLRGDVIHYSWLFDCCSQKKLLPLKPKYFIHCSEQSKKLLEEEIDNFSDSY 403
            SKGIKYQAAKL GD+IHYSW+ DCC QKKLLPL+PK F+  S+ SKK L EEID FSDSY
Sbjct: 711  SKGIKYQAAKLHGDIIHYSWVLDCCLQKKLLPLQPKSFLFLSDGSKKKLHEEIDEFSDSY 770

Query: 402  YLDLDIVDLKQLLNNVDGLEDSKSVDXXXXXYCPKDKWSYFSGCCIYFHPSTQS-NXXXX 226
            Y DLD+ D+KQLL+N++  ED K++D     YCP++KWS F GCC+YFH S +S      
Sbjct: 771  YWDLDLSDIKQLLSNINASEDGKAIDDLKQKYCPEEKWSLFHGCCVYFHISRESLTPDWE 830

Query: 225  XXXXXAQKRMKFEVSMGGGKVSGSLSQATHLVIQSLQFVDVGVDAALNSFSAAEVHLLCK 46
                 A +R+K E+ MGGGKVS +++ ATHLV+ ++   DV   + + SF+ AE H L  
Sbjct: 831  SLLGLAFRRLKLEIFMGGGKVSNNIAHATHLVVLNVPASDVDFGSLVKSFTTAEKHFLLN 890

Query: 45   KRMHVVGSQWLEDSI 1
            KR++V+GSQWLEDS+
Sbjct: 891  KRLYVIGSQWLEDSL 905


>ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max]
          Length = 1171

 Score =  670 bits (1728), Expect = 0.0
 Identities = 332/495 (67%), Positives = 398/495 (80%), Gaps = 3/495 (0%)
 Frame = -1

Query: 1482 DDVERFFKAIIDNRDEGIVLKDLASKWEPSDRSVKWLKLKPEYIRAGSDLDVLVIXXXXX 1303
            D+VERFFK  I+NRDEGIVLKD +SKWEPSDRS KWLKLKPEYI+AGSDLDVL+I     
Sbjct: 402  DEVERFFKETIENRDEGIVLKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYG 461

Query: 1302 XXXXXGEVAQFLVGLAERPTTTTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRRYEYP 1123
                 GEVAQFLVGLAERP+  T+P++FISFCRVGTGLSD+ELDAVVTKLKPYFR+YEYP
Sbjct: 462  SGRRGGEVAQFLVGLAERPSPNTHPKQFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYP 521

Query: 1122 KKAAPSFYQVTNNSKERPDVWIDSPEKSIILSINSDIRTIRSEVFAAPYSLRFPRIDRVR 943
            KK  PSFYQVTN+SKERPDVW+DSPEKSIILSI SDIRTI SEVF+APYSLRFPRIDRVR
Sbjct: 522  KKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFSAPYSLRFPRIDRVR 581

Query: 942  YDKPWHECLDVQSFIELVQSSNGTTQREGDHGVLLDDKPKQRKVSGKGEKKNVTVVPSHI 763
            YDK W+ECLDVQSFIELV SSNGTTQR+ ++G   D KPK+ K S +GEKKN+++VPSH+
Sbjct: 582  YDKAWYECLDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRSKSSTRGEKKNLSIVPSHL 641

Query: 762  IQTDVSDIKGETLIFSKMMFYFVNLPPNHSLDSLHRLVAENGGTSSMNLNNSVTHCIAAE 583
            IQTDVS IKG +LIFS MMFYFVN+P +HSL+SLH+++AENGGT SMNLNNSVTHC+AA+
Sbjct: 642  IQTDVSSIKGGSLIFSNMMFYFVNVPLSHSLESLHKIIAENGGTFSMNLNNSVTHCVAAD 701

Query: 582  SKGIKYQAAKLRGDVIHYSWLFDCCSQKKLLPLKPKYFIHCSEQSKKLLEEEIDNFSDSY 403
            SKG K++AAK  GD+IHYSW+ DC  QKKL+ L+PKYF+  SE +KK L+EEID FSD+Y
Sbjct: 702  SKGFKFEAAKRHGDIIHYSWVLDCYDQKKLVCLQPKYFLFLSELTKKKLQEEIDEFSDTY 761

Query: 402  YLDLDIVDLKQLLNNVDGLEDSKSVDXXXXXYCPKDKWSYFSGCCIYFH---PSTQSNXX 232
            YLDLD+  +KQLL+N+D  ED  +VD     YCPKDKWS+F GC IYFH   PS +S+  
Sbjct: 762  YLDLDLGVIKQLLSNIDRSEDVSTVDHYRKKYCPKDKWSFFYGCSIYFHSAIPSLKSDWH 821

Query: 231  XXXXXXXAQKRMKFEVSMGGGKVSGSLSQATHLVIQSLQFVDVGVDAALNSFSAAEVHLL 52
                     +R+K EV MGGGKV+ +L+ ATHLV+  +       +   +SF++ +  +L
Sbjct: 822  FILQLAV--RRLKLEVLMGGGKVTSNLTCATHLVVLLVPGYQTDFEQIQSSFTSVKRKIL 879

Query: 51   CKKRMHVVGSQWLED 7
              KR+H+V SQWLED
Sbjct: 880  RSKRLHIVKSQWLED 894