BLASTX nr result
ID: Bupleurum21_contig00010611
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00010611
(1993 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI16435.3| unnamed protein product [Vitis vinifera] 909 0.0
ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 879 0.0
ref|XP_003543555.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 879 0.0
ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago trun... 876 0.0
ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thal... 867 0.0
>emb|CBI16435.3| unnamed protein product [Vitis vinifera]
Length = 673
Score = 909 bits (2350), Expect = 0.0
Identities = 447/511 (87%), Positives = 480/511 (93%)
Frame = -1
Query: 1627 QDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK 1448
+DNG+GMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK
Sbjct: 163 KDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK 222
Query: 1447 GQNYLSFCRLDIDINRNIPHIHLHEKRDLKERWHGAEIQVVIAGNWTTYRSKILHYMRQL 1268
GQ+Y+SFCRLDIDI+RNIPHIHLHEKRD KERW GAEIQVVI GNWTTYRSKILHYMRQ+
Sbjct: 223 GQSYISFCRLDIDIHRNIPHIHLHEKRDNKERWCGAEIQVVIEGNWTTYRSKILHYMRQM 282
Query: 1267 AVITPYAQFLFNFVSDASDKNVSIRFARRTDIMPPAPLETKYHPSAVDLLLIKRLITETS 1088
AVITPYAQFLF FVSD SDKNV+IRFARRTDIMPP P ETKYHPSAVDLLLIKRLI+ETS
Sbjct: 283 AVITPYAQFLFKFVSDTSDKNVTIRFARRTDIMPPVPAETKYHPSAVDLLLIKRLISETS 342
Query: 1087 KQNLLQFLQHEFVNIGKAFAERLIGEMGPDFSPKTPVKSLTAQQIVRIHQLFRQAKFDDP 908
K+NLLQFLQHEFVNIGK++AERLIGEMGPDFSPK VKSLT+QQIVRIHQLFRQAKFDDP
Sbjct: 343 KENLLQFLQHEFVNIGKSYAERLIGEMGPDFSPKMAVKSLTSQQIVRIHQLFRQAKFDDP 402
Query: 907 SGDCLSPAGEYNLRLGIIKELHPEMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNV 728
SGDCLSPAGEYNLRLGIIKELHP+MVATYSGSAQVFEGHPF+VEAGVS+GGKDVKQGLN+
Sbjct: 403 SGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFMVEAGVSIGGKDVKQGLNI 462
Query: 727 FRFANRIPLLFEQGADVVTRTAMKRINWNSYKINHTQDKIGVFVSIVSTKIPFKGTGKEY 548
FRFANRIPLLFEQGADVVTRTA+KRINWNSYKIN QDKIGVFVSIVSTKIPFKGTGKEY
Sbjct: 463 FRFANRIPLLFEQGADVVTRTALKRINWNSYKINQAQDKIGVFVSIVSTKIPFKGTGKEY 522
Query: 547 IGDDISEIASAVKTSIQQCCIQLKSKIAKKIQAREQQERKRNLSKYIPDASGAIYEVLKE 368
IGDDISEIASAVK+SIQQCCIQLKSKI KKIQAR QQERKRNLSKYIPDA+GAIY+VL+E
Sbjct: 523 IGDDISEIASAVKSSIQQCCIQLKSKIVKKIQARVQQERKRNLSKYIPDATGAIYDVLRE 582
Query: 367 MSTSHKSKKKRYDGEDAELLTKVSARLITKETLMEKLAEHVEQVDYEMALEYATHRGVTE 188
M+ H SKKKRY+ EDA++L KVS ITK+TL EKLA+HVEQVDYEMALEYAT GV+E
Sbjct: 583 MAQLHASKKKRYEDEDADVLRKVSTHSITKQTLSEKLAKHVEQVDYEMALEYATQSGVSE 642
Query: 187 EPRENLFIQSLRDDNKFVDFQSPVFVFRLFQ 95
EPRE +++QSL D F+DF SPVF FRL+Q
Sbjct: 643 EPREAIYLQSLEDGKNFIDFHSPVFAFRLYQ 673
>ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus]
gi|449525918|ref|XP_004169963.1| PREDICTED: DNA
topoisomerase 6 subunit B-like [Cucumis sativus]
Length = 696
Score = 879 bits (2272), Expect = 0.0
Identities = 438/532 (82%), Positives = 474/532 (89%), Gaps = 23/532 (4%)
Frame = -1
Query: 1627 QDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK 1448
+DNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK
Sbjct: 163 KDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK 222
Query: 1447 GQNYLSFCRLDIDINRNIPHIHLHEKRDLKERWHGAEIQVVIAGNWTTYRSKILHYMRQL 1268
GQNY SFCRLDIDI+RNIPHIH+ EKRD K+ WHGAEIQVVI GNWTTYRSKILHYMRQ+
Sbjct: 223 GQNYTSFCRLDIDIHRNIPHIHIQEKRDNKDLWHGAEIQVVIEGNWTTYRSKILHYMRQM 282
Query: 1267 AVITPYAQFLFNFVSDASDKNVSIRFARRTDIMPPAPLETKYHPSAVDLLLIKRLITETS 1088
AVITPYAQFLF FVSD DKN++IRF+RRTD+MPP PLETK+HPSAVDLLLIKRLI ET+
Sbjct: 283 AVITPYAQFLFRFVSDTPDKNITIRFSRRTDVMPPVPLETKHHPSAVDLLLIKRLIAETA 342
Query: 1087 KQNLLQFLQHEFVNIGKAFAERLIGEMGPDFSPKTPVKSLTAQQIVRIHQLFRQAKFDDP 908
KQNLLQFLQHEFVNIGK FAERLIGEMGP+FSPK VKSLT+QQIVRIHQLFRQAKFDDP
Sbjct: 343 KQNLLQFLQHEFVNIGKPFAERLIGEMGPEFSPKMSVKSLTSQQIVRIHQLFRQAKFDDP 402
Query: 907 SGDCLSPAGEYNLRLGIIKELHPEMVATYSG-----------------------SAQVFE 797
SGDCLSPAGEYNLRLGIIKELHP+MVATYSG SAQVFE
Sbjct: 403 SGDCLSPAGEYNLRLGIIKELHPDMVATYSGRLYLNLELCKLSSKYVNLMSNVDSAQVFE 462
Query: 796 GHPFIVEAGVSVGGKDVKQGLNVFRFANRIPLLFEQGADVVTRTAMKRINWNSYKINHTQ 617
GHPFIVEAGVS+GGKDVKQGLN+FRFANRIPLLFEQGADVVTRTA+KRINWNSYKIN Q
Sbjct: 463 GHPFIVEAGVSIGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQAQ 522
Query: 616 DKIGVFVSIVSTKIPFKGTGKEYIGDDISEIASAVKTSIQQCCIQLKSKIAKKIQAREQQ 437
DKIGVFVSIVSTKIPFKGTGKEYIGDDISEIASAVK++IQQCCIQLKSKI KKIQAREQQ
Sbjct: 523 DKIGVFVSIVSTKIPFKGTGKEYIGDDISEIASAVKSAIQQCCIQLKSKIVKKIQAREQQ 582
Query: 436 ERKRNLSKYIPDASGAIYEVLKEMSTSHKSKKKRYDGEDAELLTKVSARLITKETLMEKL 257
ERKRNLS+YIPDA+ A+Y VLKEM+ H SKKKR+D EDAE+L+KVSARLIT ETL +KL
Sbjct: 583 ERKRNLSRYIPDATNAVYNVLKEMAQVHASKKKRHDCEDAEILSKVSARLITNETLRDKL 642
Query: 256 AEHVEQVDYEMALEYATHRGVTEEPRENLFIQSLRDDNKFVDFQSPVFVFRL 101
A+HVEQVD+EMA+EYAT G + E +E ++IQSL + F DFQSP+FVFRL
Sbjct: 643 AQHVEQVDHEMAMEYATQSGASAEAKEEMYIQSLDATHSFTDFQSPLFVFRL 694
>ref|XP_003543555.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform 1 [Glycine max]
Length = 673
Score = 879 bits (2272), Expect = 0.0
Identities = 432/511 (84%), Positives = 470/511 (91%)
Frame = -1
Query: 1627 QDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK 1448
+DNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI+SSMK
Sbjct: 163 KDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEITSSMK 222
Query: 1447 GQNYLSFCRLDIDINRNIPHIHLHEKRDLKERWHGAEIQVVIAGNWTTYRSKILHYMRQL 1268
QNY+SFCRLDIDI++NIPH+HLHEKR+ KE W GAEIQVVI GNWTTYRSKILHYMRQ+
Sbjct: 223 NQNYVSFCRLDIDIHKNIPHVHLHEKRENKEHWRGAEIQVVIEGNWTTYRSKILHYMRQM 282
Query: 1267 AVITPYAQFLFNFVSDASDKNVSIRFARRTDIMPPAPLETKYHPSAVDLLLIKRLITETS 1088
AVITPYAQFLF FVSDA DKNVSIRFARRTD+MPP P+ETK+HPS+VDLLLIKRLI ETS
Sbjct: 283 AVITPYAQFLFKFVSDAPDKNVSIRFARRTDVMPPIPMETKHHPSSVDLLLIKRLIAETS 342
Query: 1087 KQNLLQFLQHEFVNIGKAFAERLIGEMGPDFSPKTPVKSLTAQQIVRIHQLFRQAKFDDP 908
KQNLLQFLQHEFVNI K++AERLIGEMGPDF K VKSLT+QQ+VRIHQL RQAKFDDP
Sbjct: 343 KQNLLQFLQHEFVNISKSYAERLIGEMGPDFGSKMTVKSLTSQQLVRIHQLLRQAKFDDP 402
Query: 907 SGDCLSPAGEYNLRLGIIKELHPEMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNV 728
SG CLSPAGEYNLRLGIIKELHP+MVATYSGSAQVFEGHPFIVEAGVSVGGK+VKQGLN+
Sbjct: 403 SGHCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKNVKQGLNI 462
Query: 727 FRFANRIPLLFEQGADVVTRTAMKRINWNSYKINHTQDKIGVFVSIVSTKIPFKGTGKEY 548
FRFANRIPLLFEQGADVVTRTA KRINW+SYKIN QDKIGVFVSIVSTKIPFKGTGKEY
Sbjct: 463 FRFANRIPLLFEQGADVVTRTAHKRINWSSYKINQMQDKIGVFVSIVSTKIPFKGTGKEY 522
Query: 547 IGDDISEIASAVKTSIQQCCIQLKSKIAKKIQAREQQERKRNLSKYIPDASGAIYEVLKE 368
IGDDI+EIASAVK +IQQCC+QLKSKI KK+ AREQQERKRNLS+YIPDASGA+Y VLKE
Sbjct: 523 IGDDITEIASAVKYAIQQCCVQLKSKIVKKMHAREQQERKRNLSRYIPDASGAVYNVLKE 582
Query: 367 MSTSHKSKKKRYDGEDAELLTKVSARLITKETLMEKLAEHVEQVDYEMALEYATHRGVTE 188
M+ H SKK RY +DAELL+KVS LITKETL EKL++HVEQVDYEMALEYAT GV+E
Sbjct: 583 MTQLHASKKIRYGDDDAELLSKVSENLITKETLCEKLSKHVEQVDYEMALEYATQSGVSE 642
Query: 187 EPRENLFIQSLRDDNKFVDFQSPVFVFRLFQ 95
EPRE ++IQSL +NK +D Q+P VFR+FQ
Sbjct: 643 EPRETIYIQSLEAENKMIDLQTPFIVFRVFQ 673
>ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago truncatula]
gi|355486528|gb|AES67731.1| DNA topoisomerase 6 subunit B
[Medicago truncatula]
Length = 671
Score = 876 bits (2263), Expect = 0.0
Identities = 429/511 (83%), Positives = 469/511 (91%)
Frame = -1
Query: 1627 QDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK 1448
+DNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK
Sbjct: 161 KDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK 220
Query: 1447 GQNYLSFCRLDIDINRNIPHIHLHEKRDLKERWHGAEIQVVIAGNWTTYRSKILHYMRQL 1268
QNY+SFCRLDIDI++NIPH+HLHEKR+ + WHGAEIQVVI GNWTTYRSKILHYMRQ+
Sbjct: 221 KQNYISFCRLDIDIHKNIPHVHLHEKRENNQNWHGAEIQVVIEGNWTTYRSKILHYMRQM 280
Query: 1267 AVITPYAQFLFNFVSDASDKNVSIRFARRTDIMPPAPLETKYHPSAVDLLLIKRLITETS 1088
AVITPYAQF F FVSDA DKNV++RFARRTD+MPP PLETK+HPS+VDLLLIKRLITETS
Sbjct: 281 AVITPYAQFQFKFVSDAPDKNVTVRFARRTDVMPPIPLETKHHPSSVDLLLIKRLITETS 340
Query: 1087 KQNLLQFLQHEFVNIGKAFAERLIGEMGPDFSPKTPVKSLTAQQIVRIHQLFRQAKFDDP 908
KQNLLQFLQHEFVNI K AERLIGEMGPDFS K VKSLT+QQ+VRIHQLFRQAKFDDP
Sbjct: 341 KQNLLQFLQHEFVNISKPHAERLIGEMGPDFSSKMAVKSLTSQQLVRIHQLFRQAKFDDP 400
Query: 907 SGDCLSPAGEYNLRLGIIKELHPEMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNV 728
SG CLSPAGEYNLRLGIIKELHP+MVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLN+
Sbjct: 401 SGHCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNI 460
Query: 727 FRFANRIPLLFEQGADVVTRTAMKRINWNSYKINHTQDKIGVFVSIVSTKIPFKGTGKEY 548
FRFANRIPLLFEQGADVVTRTA+KRINW+SYKIN QDKIGVFVSIVSTKIPFKGTGKEY
Sbjct: 461 FRFANRIPLLFEQGADVVTRTALKRINWSSYKINQVQDKIGVFVSIVSTKIPFKGTGKEY 520
Query: 547 IGDDISEIASAVKTSIQQCCIQLKSKIAKKIQAREQQERKRNLSKYIPDASGAIYEVLKE 368
IGDDI+EIASAVK++IQQCCIQLKSKI K+IQAREQQERKRNLS+YIPDASGA Y VLK+
Sbjct: 521 IGDDITEIASAVKSAIQQCCIQLKSKIMKRIQAREQQERKRNLSRYIPDASGAFYNVLKQ 580
Query: 367 MSTSHKSKKKRYDGEDAELLTKVSARLITKETLMEKLAEHVEQVDYEMALEYATHRGVTE 188
M + SKK RY +D ELL K+S L+TKET EKLA+HVEQVDYEMALE+AT GV+E
Sbjct: 581 MLPLNPSKKSRYGDDDVELLRKISEDLVTKETFSEKLAKHVEQVDYEMALEFATQSGVSE 640
Query: 187 EPRENLFIQSLRDDNKFVDFQSPVFVFRLFQ 95
EPRE ++IQ+L +NK +D +P+FVFR+FQ
Sbjct: 641 EPRETIYIQALDAENKTIDLHAPIFVFRVFQ 671
>ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thaliana]
gi|75169001|sp|Q9C5V6.1|TOP6B_ARATH RecName: Full=DNA
topoisomerase 6 subunit B; Short=AtTOP6B; AltName:
Full=Protein BRASSINOSTEROID INSENSITIVE 3; AltName:
Full=Protein ELONGATED HYPOCOTYL 6; AltName: Full=Protein
ROOT HAIRLESS 3 gi|12331188|emb|CAC24690.1| topoisomerase
6 subunit B [Arabidopsis thaliana]
gi|332642901|gb|AEE76422.1| DNA topoisomerase 6 subunit B
[Arabidopsis thaliana]
Length = 670
Score = 867 bits (2241), Expect = 0.0
Identities = 423/511 (82%), Positives = 472/511 (92%), Gaps = 2/511 (0%)
Frame = -1
Query: 1627 QDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK 1448
+DNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK
Sbjct: 159 KDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMK 218
Query: 1447 GQNYLSFCRLDIDINRNIPHIHLHEKRDLKERWHGAEIQVVIAGNWTTYRSKILHYMRQL 1268
QNY++FCRLDIDI+RNIPHIHLHEK+ KE+WHGAEIQVVI GNWTTYRSKILHYMRQ+
Sbjct: 219 SQNYVTFCRLDIDIHRNIPHIHLHEKKGNKEKWHGAEIQVVIEGNWTTYRSKILHYMRQM 278
Query: 1267 AVITPYAQFLFNFVSDASDKNVSIRFARRTDIMPPAPLETKYHPSAVDLLLIKRLITETS 1088
AVITPYAQFLF F+S+ +KNV+I+F RRTD+MPP P+ETK+HPS+VDLLLIKRLIT+TS
Sbjct: 279 AVITPYAQFLFRFISETPEKNVTIKFTRRTDVMPPIPIETKHHPSSVDLLLIKRLITDTS 338
Query: 1087 KQNLLQFLQHEFVNIGKAFAERLIGEMGPDFSPKTPVKSLTAQQIVRIHQLFRQAKFDDP 908
K+ LLQFLQ+EFVNI K A RLIGEMGPDF P VKS+T+QQ+VRIHQLFRQAKFDDP
Sbjct: 339 KKTLLQFLQNEFVNINKTLAARLIGEMGPDFGPSMAVKSVTSQQMVRIHQLFRQAKFDDP 398
Query: 907 SGDCLSPAGEYNLRLGIIKELHPEMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNV 728
SGDCLSPAGEYNLRLGIIKELHP+MVATYSGSAQVFEGHPFIVEAGVS+GG+DVKQG+N+
Sbjct: 399 SGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSLGGRDVKQGINI 458
Query: 727 FRFANRIPLLFEQGADVVTRTAMKRINWNSYKINHTQDKIGVFVSIVSTKIPFKGTGKEY 548
FRFANRIPLLFEQGADVVTRTA+KRINWNSYKIN TQDKIGVFVSIVSTKIPFKGTGKEY
Sbjct: 459 FRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEY 518
Query: 547 IGDDISEIASAVKTSIQQCCIQLKSKIAKKIQAREQQERKRNLSKYIPDASGAIYEVLKE 368
IGDDISEIA+AVK++IQQCCIQLKSKI K++QAREQQERKR+LS+YIPDA+GA+YEVLK+
Sbjct: 519 IGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVYEVLKQ 578
Query: 367 MSTSHKSKKKRYDGEDAELLTKVSARLITKETLMEKLAEHVEQVDYEMALEYATHRGVTE 188
M+ HK+K+KRY ED +L KVS ++ITKETL EKLAEHVEQVDYEMALEYAT GV+E
Sbjct: 579 MTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLKEKLAEHVEQVDYEMALEYATQSGVSE 638
Query: 187 EPRENLFIQSLRDDNK--FVDFQSPVFVFRL 101
EPREN+++Q L D NK F+D SP FVFRL
Sbjct: 639 EPRENIYLQHL-DPNKSNFIDLHSPTFVFRL 668