BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00010507
         (2704 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containi...   516   e-143
ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containi...   471   e-130
ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containi...   465   e-128
ref|XP_002885286.1| pentatricopeptide repeat-containing protein ...   380   e-102
ref|XP_002531295.1| pentatricopeptide repeat-containing protein,...   378   e-102

>ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
            [Vitis vinifera] gi|298204853|emb|CBI34160.3| unnamed
            protein product [Vitis vinifera]
          Length = 471

 Score =  516 bits (1329), Expect = e-143
 Identities = 266/442 (60%), Positives = 322/442 (72%), Gaps = 1/442 (0%)
 Frame = +3

Query: 255  QIHAQLLTNNLNSPSDFGKLIKQYCALSSPHGTNYARSILTHFSTHTNVYLLNVFIRCSH 434
            Q+HA L+TN ++SP    KLI  YCA SSPH   YA +   H  +  N++L N  I+C  
Sbjct: 30   QLHAHLITNAVSSPPLLAKLIHHYCAFSSPH---YAYTFFIHLRS-PNLFLFNTLIKCLP 85

Query: 435  PRFSVQIFSDYVSIAGLVFDSFTYIFALGACARSSLFWEGKLIHGRTIKHGFCLDVMLQT 614
            P  S+ +F+D+VS   LVFD FTYIFALGACARS   WEG+ IH R +K G   +V++QT
Sbjct: 86   PSSSILVFADWVSREALVFDDFTYIFALGACARSPSLWEGRQIHARILKQGVWSNVLVQT 145

Query: 615  TVVNFYARNQDIVSARKVFDNMSVRSTGTWNAMIAGYCLQRERVEREACNSALVLFCDML 794
            T ++FYA N D+  AR VFD M  RS+ TWNAMI GYC QR +V   A   ALVLF  ML
Sbjct: 146  TAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYA-RDALVLFRAML 204

Query: 795  SNICGVKPNGTTMVSVLSKASQIGVLESGTCIHGYIEKMLHEPENNVYVGTGLVDMYSKC 974
             + CGVKP  TTMV VLS ASQ+GVLE+G  +HGYIEK +  P N+V+VGTGLVDMYSKC
Sbjct: 205  VDACGVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKTVLAPANDVFVGTGLVDMYSKC 264

Query: 975  GCLDSALCIFERMEERNVLTWTAMTSGLAIHGKGKEALHVLDAMEGHGIIPNAVTFTSLL 1154
            GCL SALCIF  M+ERNVLTWTAM +GLA HG+GKEAL +LD M  +G+ PNAVTFTSL 
Sbjct: 265  GCLGSALCIFWGMKERNVLTWTAMITGLARHGRGKEALELLDEMVAYGVKPNAVTFTSLF 324

Query: 1155 SACCYAGLLEEGLSLFHRM-DRFGVVATRQHYGCIVNLLGRAGHLEEAYNFMSNMKVEKD 1331
            SACC+AGL+EEGL LFH M  +FGV    QHYGCIV+LLGRAGHL+EAY+F+  M VE D
Sbjct: 325  SACCHAGLVEEGLQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGMPVEPD 384

Query: 1332 VILWRTLLSACNVHGDLLTGEKVRQVILHMQPEQLTVSPDDAADMGEDYIALSNMYASAD 1511
             ILWR+LLSAC VH D++ GE+V +++L +QP+Q   S  D     ED+IALSN+YASA+
Sbjct: 385  AILWRSLLSACKVHRDVVMGEEVGKLLLQLQPQQ---SFADLVAASEDFIALSNVYASAE 441

Query: 1512 RWDDVTMVREEMKYKGYGTKPG 1577
            RW+DV  VRE MK KG  TKPG
Sbjct: 442  RWEDVETVREAMKVKGIETKPG 463


>ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970-like
            [Glycine max]
          Length = 477

 Score =  471 bits (1213), Expect = e-130
 Identities = 238/445 (53%), Positives = 312/445 (70%), Gaps = 4/445 (0%)
 Frame = +3

Query: 255  QIHAQLLTNNLNSPSDFGKLIKQYCALSSPHGTNYARSILTHFSTHTNVYLLNVFIRCSH 434
            QIHAQL+TN L SP+ + KLI+ YC     H  + A  +  +F    +++L N  IRC  
Sbjct: 26   QIHAQLITNGLKSPTFWAKLIEHYCGSPDQHIASNAHLVFQYFDK-PDLFLFNTLIRCVQ 84

Query: 435  PRFSVQIFSDYVSIAGLVFDSFTYIFALGACARS---SLFWEGKLIHGRTIKHGFCLDVM 605
            P   + IF +  S   + FD +TY F LGACARS   S  W G+ +H R +KHGF  +++
Sbjct: 85   PNDCILIFQNEFSRGLMYFDEYTYNFVLGACARSPSASTLWVGRQLHARIVKHGFESNIL 144

Query: 606  LQTTVVNFYARNQDIVSARKVFDNMSVRSTGTWNAMIAGYCLQRERVEREACNSALVLFC 785
            + TT + FYA N+DI+SAR+VFD M  RST TWNAMI GY  Q+E  ++ A N AL LF 
Sbjct: 145  VPTTKIYFYASNKDIISARRVFDEMPRRSTVTWNAMITGYSSQKEGNKKYALN-ALSLFI 203

Query: 786  DMLSNICGVKPNGTTMVSVLSKASQIGVLESGTCIHGYIEKMLHEPENNVYVGTGLVDMY 965
            DML ++  +KP GTT+VSVLS  SQIG+LE+G CIHG+ EK +  PE++V++GTGLVDMY
Sbjct: 204  DMLVDVSVIKPTGTTIVSVLSAVSQIGMLETGACIHGFAEKTVCTPEDDVFIGTGLVDMY 263

Query: 966  SKCGCLDSALCIFERMEERNVLTWTAMTSGLAIHGKGKEALHVLDAMEGHGIIPNAVTFT 1145
            SKCGCLDSAL +F RM ++N+LTWTAMT+ LAIHGKGK+AL VL  M  +G+ PN  TFT
Sbjct: 264  SKCGCLDSALSVFWRMNQKNILTWTAMTTSLAIHGKGKQALEVLYKMGAYGVKPNEATFT 323

Query: 1146 SLLSACCYAGLLEEGLSLFHRMDR-FGVVATRQHYGCIVNLLGRAGHLEEAYNFMSNMKV 1322
            S LSACC+ GL+EEGL LFH M R FG++   +HYGCIV+LLGRAG+LEEAY+F+  M +
Sbjct: 324  SFLSACCHGGLVEEGLILFHEMKRTFGMMPQIKHYGCIVDLLGRAGNLEEAYDFIMRMPI 383

Query: 1323 EKDVILWRTLLSACNVHGDLLTGEKVRQVILHMQPEQLTVSPDDAADMGEDYIALSNMYA 1502
              D ++WR+LL AC +HGD++ GEKV + +L ++      SP       EDYIALSN+YA
Sbjct: 384  NPDAVIWRSLLGACKIHGDVVMGEKVGKFLLQLEEWSSAESP-----KSEDYIALSNVYA 438

Query: 1503 SADRWDDVTMVREEMKYKGYGTKPG 1577
             A++WDDV +VR+ MK KG  +K G
Sbjct: 439  LAEKWDDVEIVRKTMKSKGILSKAG 463


>ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970-like
            [Glycine max]
          Length = 595

 Score =  465 bits (1197), Expect = e-128
 Identities = 238/445 (53%), Positives = 308/445 (69%), Gaps = 4/445 (0%)
 Frame = +3

Query: 255  QIHAQLLTNNLNSPSDFGKLIKQYCALSSPHGTNYARSILTHFSTHTNVYLLNVFIRCSH 434
            QIHAQL+TN L  P+ + KLI+ YC     H  N AR +  +F    +++L N  IRC  
Sbjct: 146  QIHAQLITNGLKYPTFWAKLIEHYCGSPDQHIANNARLVFQYFDK-PDLFLFNTLIRCVQ 204

Query: 435  PRFSVQIFSDYVSIAGLVFDSFTYIFALGACARS---SLFWEGKLIHGRTIKHGFCLDVM 605
            P  S+ IF +  S   + FD +TY F LGACARS   S  W G+ +H   +KHG   +++
Sbjct: 205  PNDSILIFRNEFSRGLMFFDEYTYNFVLGACARSPSASTLWVGRQLHALIVKHGVESNIV 264

Query: 606  LQTTVVNFYARNQDIVSARKVFDNMSVRSTGTWNAMIAGYCLQRERVEREACNSALVLFC 785
            + TT V FYA N+DI+S+RKVFD M  RST TWNAMI GY   +E  ++ A N AL LF 
Sbjct: 265  VPTTKVYFYASNKDIISSRKVFDEMPRRSTVTWNAMITGYSSLKEGNKKYALN-ALYLFI 323

Query: 786  DMLSNICGVKPNGTTMVSVLSKASQIGVLESGTCIHGYIEKMLHEPENNVYVGTGLVDMY 965
            DML ++ G+KP  TT+VSVLS  SQIG+LE+G CIHG+ EK +  PE++V++GTGLVDMY
Sbjct: 324  DMLIDVSGIKPTATTIVSVLSAVSQIGMLETGACIHGFAEKTVCTPEDDVFIGTGLVDMY 383

Query: 966  SKCGCLDSALCIFERMEERNVLTWTAMTSGLAIHGKGKEALHVLDAMEGHGIIPNAVTFT 1145
            SKCGCLDSAL +F RM ++N++TWTAMT+GLAIHGKGK++L VL  M  +G+ PN  TFT
Sbjct: 384  SKCGCLDSALSVFWRMNQKNIMTWTAMTTGLAIHGKGKQSLEVLYKMGAYGVKPNEATFT 443

Query: 1146 SLLSACCYAGLLEEGLSLFHRMDR-FGVVATRQHYGCIVNLLGRAGHLEEAYNFMSNMKV 1322
            S LSACC+ GL+EEGL LF  M R FGV+   QHYGCIV+LLGRAG LEEAY+F+  M +
Sbjct: 444  SFLSACCHGGLVEEGLQLFLEMKRTFGVMPQIQHYGCIVDLLGRAGKLEEAYDFIMQMPI 503

Query: 1323 EKDVILWRTLLSACNVHGDLLTGEKVRQVILHMQPEQLTVSPDDAADMGEDYIALSNMYA 1502
              D ++WR+LL+ACN+HGD++ GEKV + +L ++      SP       EDYIALSN+YA
Sbjct: 504  NPDAVIWRSLLAACNIHGDVVMGEKVGKFLLQLEEWSSAESP-----KSEDYIALSNVYA 558

Query: 1503 SADRWDDVTMVREEMKYKGYGTKPG 1577
             A++WDDV  VR +MK K    K G
Sbjct: 559  LAEKWDDVETVRIKMKAKSILNKAG 583


>ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297331126|gb|EFH61545.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 471

 Score =  380 bits (975), Expect = e-102
 Identities = 201/447 (44%), Positives = 290/447 (64%), Gaps = 6/447 (1%)
 Frame = +3

Query: 255  QIHAQLLTNNLNSPSDFGKLIKQYCALSSPHGTNYARSILTHFSTHTNVYLLNVFIRCSH 434
            QIHAQL+ N     S FGKLI  YC+  S   +  A  ++     H + +L N  ++CS 
Sbjct: 26   QIHAQLVINGCQDNSLFGKLIGHYCSKPSTESSKLAHLLVFPRFGHPDKFLFNTLLKCSK 85

Query: 435  PRFSVQIFSDYVSIAGLVF-DSFTYIFALGACARS---SLFWEGKLIHGRTIKHGFCLDV 602
            P  S++IF+++ S + L++ +  T++F LGACARS   S    G+++HG   K GF  + 
Sbjct: 86   PEDSIRIFTNWASKSSLLYLNERTFVFVLGACARSASSSALRVGRIVHGMVKKLGFLYES 145

Query: 603  -MLQTTVVNFYARNQDIVSARKVFDNMSVRSTGTWNAMIAGYCLQRERVEREACNSALVL 779
             ++ TT+++ YA+N D+  ARKVFD M  R++ TWNAMI GYC  +++    A   A++L
Sbjct: 146  ELIGTTLLHCYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNA-RKAMIL 204

Query: 780  FCDMLSNICGVKPNGTTMVSVLSKASQIGVLESGTCIHGYIEKMLHEPENNVYVGTGLVD 959
            F        GV+P  TTMV VL   SQ G++E G+ +HGYIEK+   PE +V++GTGLVD
Sbjct: 205  FRRFSCCGSGVRPTDTTMVCVLPAISQTGLIEIGSLVHGYIEKLGFTPEIDVFIGTGLVD 264

Query: 960  MYSKCGCLDSALCIFERMEERNVLTWTAMTSGLAIHGKGKEALHVLDAMEGHGIIPNAVT 1139
            MYSKCGCL+SA  +FE M+ +NV TWT+M +GLA+HG+G E  ++LD M   GI PN VT
Sbjct: 265  MYSKCGCLNSAFSVFELMKVKNVFTWTSMATGLALHGRGNETPNLLDRMAESGIKPNEVT 324

Query: 1140 FTSLLSACCYAGLLEEGLSLFHRM-DRFGVVATRQHYGCIVNLLGRAGHLEEAYNFMSNM 1316
            FTSLLSA  + GL++EG+ LF  M  RFGV    QHYGCIV+LLG+AG ++EAY F+  M
Sbjct: 325  FTSLLSAYRHIGLVQEGIELFKSMRTRFGVTPVIQHYGCIVDLLGKAGRIQEAYEFVLAM 384

Query: 1317 KVEKDVILWRTLLSACNVHGDLLTGEKVRQVILHMQPEQLTVSPDDAADMGEDYIALSNM 1496
             ++ D IL R+L +AC+++G+   GE++ + +L ++ E+  +S  +     EDY+ALSNM
Sbjct: 385  PIKPDTILLRSLCNACSIYGETAMGEEIGKALLEIEREEEKLSGSEC----EDYVALSNM 440

Query: 1497 YASADRWDDVTMVREEMKYKGYGTKPG 1577
             A   +W +V  +R EMK +   T+PG
Sbjct: 441  LAHKGKWIEVEKLRNEMKERRIKTRPG 467


>ref|XP_002531295.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223529128|gb|EEF31108.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 313

 Score =  378 bits (971), Expect = e-102
 Identities = 185/301 (61%), Positives = 234/301 (77%), Gaps = 1/301 (0%)
 Frame = +3

Query: 678  MSVRSTGTWNAMIAGYCLQRERVEREACNSALVLFCDMLSNICGVKPNGTTMVSVLSKAS 857
            MS RS  TWNAMI G+  QRE+ +  A  +AL+LF DM+ ++C  KPN  TMVSVLS +S
Sbjct: 1    MSKRSVVTWNAMITGFSSQREKAKDSAV-AALMLFRDMVVDVCAEKPNDITMVSVLSASS 59

Query: 858  QIGVLESGTCIHGYIEKMLHEPENNVYVGTGLVDMYSKCGCLDSALCIFERMEERNVLTW 1037
            Q+GVLE G CIHGYIEK +  P+N++++GTGLVDMYSKCGCLDSA+  F  M+ +N LTW
Sbjct: 60   QLGVLECGACIHGYIEKTICVPQNDIFIGTGLVDMYSKCGCLDSAVKFFVEMKLKNKLTW 119

Query: 1038 TAMTSGLAIHGKGKEALHVLDAMEGHGIIPNAVTFTSLLSACCYAGLLEEGLSLFHRM-D 1214
            TAM +GLAIHGKGKE L +LD M   GI PNAVTFTSL SACC++GL+EEGL LFH M  
Sbjct: 120  TAMATGLAIHGKGKETLELLDGMGASGIKPNAVTFTSLFSACCHSGLVEEGLHLFHNMKG 179

Query: 1215 RFGVVATRQHYGCIVNLLGRAGHLEEAYNFMSNMKVEKDVILWRTLLSACNVHGDLLTGE 1394
            +FG+    QHYGCIV+LLG+ GHL+EAY F++ M +E D ILWR LLSAC VHGD++ GE
Sbjct: 180  KFGIEPGIQHYGCIVDLLGKGGHLKEAYEFIAGMPMEPDAILWRCLLSACKVHGDVVMGE 239

Query: 1395 KVRQVILHMQPEQLTVSPDDAADMGEDYIALSNMYASADRWDDVTMVREEMKYKGYGTKP 1574
            KV +++LH+QPE+ +V  DD++   EDY+ALSN+YASA+RW+DV ++R+EMK K   TKP
Sbjct: 240  KVAKILLHLQPEKNSVESDDSS---EDYVALSNVYASAERWEDVEILRKEMKVKRLETKP 296

Query: 1575 G 1577
            G
Sbjct: 297  G 297